Wall clock time and date at job start Mon Mar 30 2020 01:43:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86800 * 120.00005 * 2 1 4 4 H 1.48506 * 109.46838 * 269.99383 * 3 2 1 5 5 H 1.48497 * 109.47419 * 29.99534 * 3 2 1 6 6 H 1.48499 * 109.47011 * 150.00096 * 3 2 1 7 7 C 1.37876 * 119.99563 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99683 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00428 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47466 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.47060 * 180.02562 * 10 9 7 12 12 N 1.46901 * 109.46769 * 180.02562 * 11 10 9 13 13 C 1.47009 * 111.00459 * 46.36163 * 12 11 10 14 14 C 1.53100 * 109.26251 * 182.39073 * 13 12 11 15 15 O 1.43014 * 109.25587 * 303.15422 * 14 13 12 16 16 C 1.43016 * 113.73910 * 58.66995 * 15 14 13 17 17 H 1.08995 * 109.50542 * 61.26198 * 16 15 14 18 18 C 1.53003 * 109.53897 * 181.37143 * 16 15 14 19 19 H 1.08997 * 110.33254 * 62.05343 * 18 16 15 20 20 C 1.54479 * 110.37327 * 299.80235 * 18 16 15 21 21 C 1.54509 * 104.06228 * 217.19072 * 20 18 16 22 22 C 1.54480 * 104.06400 * 0.02562 * 21 20 18 23 23 O 1.44424 * 110.37094 * 184.42276 * 18 16 15 24 24 C 1.47013 * 110.99794 * 169.99933 * 12 11 10 25 25 H 0.97002 * 119.99731 * 0.02562 * 1 2 3 26 26 H 1.09002 * 109.47120 * 59.99671 * 9 7 2 27 27 H 1.08998 * 109.46862 * 300.00473 * 9 7 2 28 28 H 1.09002 * 109.47153 * 59.99773 * 10 9 7 29 29 H 1.09001 * 109.46832 * 299.99964 * 10 9 7 30 30 H 1.09001 * 109.47194 * 299.99650 * 11 10 9 31 31 H 1.08992 * 109.47399 * 59.99823 * 11 10 9 32 32 H 1.09000 * 109.50728 * 302.33198 * 13 12 11 33 33 H 1.09008 * 109.50611 * 62.45595 * 13 12 11 34 34 H 1.08997 * 109.50528 * 183.21655 * 14 13 12 35 35 H 1.09002 * 109.50034 * 63.08813 * 14 13 12 36 36 H 1.09000 * 110.51142 * 335.83701 * 20 18 16 37 37 H 1.08996 * 110.50877 * 98.41103 * 20 18 16 38 38 H 1.09008 * 110.50953 * 118.64537 * 21 20 18 39 39 H 1.08996 * 110.51421 * 241.35569 * 21 20 18 40 40 H 1.09001 * 110.37135 * 142.80486 * 22 21 20 41 41 H 1.08997 * 110.37087 * 265.03280 * 22 21 20 42 42 H 1.09005 * 109.51011 * 297.53877 * 24 12 11 43 43 H 1.09000 * 109.51189 * 57.62575 * 24 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4002 5 1 1.4467 2.6527 0.6999 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0005 11 6 1.4800 -4.9871 -0.0001 12 7 2.4346 -6.1037 0.0005 13 6 3.4962 -5.8888 0.9945 14 6 4.4989 -7.0434 0.9202 15 8 3.8099 -8.2802 1.1226 16 6 2.7696 -8.5220 0.1715 17 1 3.1964 -8.5702 -0.8303 18 6 2.0773 -9.8473 0.4962 19 1 1.6125 -9.8003 1.4810 20 6 3.0899 -11.0123 0.4345 21 6 2.2808 -12.1811 -0.1709 22 6 0.8753 -11.5839 -0.4039 23 8 1.0925 -10.1604 -0.5126 24 6 1.7494 -7.3824 0.2383 25 1 -0.4850 0.8401 -0.0004 26 1 0.6246 -2.5571 -0.8897 27 1 0.6240 -2.5566 0.8902 28 1 2.8718 -3.6044 0.8905 29 1 2.8718 -3.6044 -0.8895 30 1 0.8531 -5.0451 0.8897 31 1 0.8537 -5.0446 -0.8902 32 1 4.0069 -4.9491 0.7843 33 1 3.0584 -5.8506 1.9921 34 1 5.2565 -6.9179 1.6938 35 1 4.9759 -7.0485 -0.0599 36 1 3.9297 -10.7545 -0.2107 37 1 3.4415 -11.2660 1.4345 38 1 2.7208 -12.5013 -1.1155 39 1 2.2307 -13.0144 0.5300 40 1 0.4454 -11.9741 -1.3264 41 1 0.2238 -11.8059 0.4412 42 1 1.2837 -7.3682 1.2237 43 1 0.9845 -7.5327 -0.5236 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000089152763.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:43:32 Heat of formation + Delta-G solvation = -119.331353 kcal Electronic energy + Delta-G solvation = -21019.538525 eV Core-core repulsion = 17870.348771 eV Total energy + Delta-G solvation = -3149.189754 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.17602 -39.85585 -37.56012 -35.48887 -33.45833 -33.17721 -32.76372 -29.96288 -29.02800 -26.81309 -25.18400 -24.38148 -23.03578 -21.97084 -21.78546 -21.14557 -18.55272 -17.83802 -17.52938 -17.05779 -16.70444 -16.52914 -16.39309 -15.96858 -15.73133 -15.16948 -15.09532 -14.80238 -14.60517 -14.24700 -13.72435 -13.53600 -13.22584 -12.95421 -12.72319 -12.68291 -12.44147 -12.42196 -12.38407 -12.18511 -11.94853 -11.66371 -11.53121 -11.39048 -11.35789 -11.14671 -10.79311 -10.62446 -10.55633 -9.42637 -8.21438 -6.32951 1.39506 1.41266 1.52311 2.25178 2.39858 2.74626 3.11776 3.36482 3.58159 3.67375 3.89500 3.95967 4.00866 4.02756 4.13734 4.17642 4.25649 4.28462 4.38844 4.50421 4.52816 4.60799 4.61832 4.72111 4.77199 4.84129 4.87707 4.92545 4.99148 4.99821 5.06445 5.14027 5.17878 5.19965 5.48367 5.69199 5.82394 5.83045 5.91222 5.96861 6.12125 6.23479 6.83795 7.36494 8.90747 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.043461 B = 0.003117 C = 0.002947 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 644.101829 B = 8981.862267 C = 9497.981347 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.003 4.003 3 Si 0.967 3.033 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.262 1.262 7 C -0.542 4.542 8 H 0.062 0.938 9 C 0.026 3.974 10 C -0.094 4.094 11 C 0.067 3.933 12 N -0.541 5.541 13 C 0.007 3.993 14 C 0.071 3.929 15 O -0.385 6.385 16 C 0.109 3.891 17 H 0.069 0.931 18 C 0.083 3.917 19 H 0.074 0.926 20 C -0.138 4.138 21 C -0.150 4.150 22 C 0.037 3.963 23 O -0.391 6.391 24 C 0.030 3.970 25 H 0.264 0.736 26 H -0.009 1.009 27 H -0.011 1.011 28 H 0.058 0.942 29 H 0.056 0.944 30 H 0.023 0.977 31 H 0.068 0.932 32 H 0.094 0.906 33 H 0.033 0.967 34 H 0.126 0.874 35 H 0.065 0.935 36 H 0.073 0.927 37 H 0.088 0.912 38 H 0.081 0.919 39 H 0.095 0.905 40 H 0.105 0.895 41 H 0.069 0.931 42 H 0.032 0.968 43 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.401 -24.963 1.692 26.092 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.200 4.200 3 Si 0.791 3.209 4 H -0.197 1.197 5 H -0.207 1.207 6 H -0.186 1.186 7 C -0.580 4.580 8 H 0.080 0.920 9 C -0.012 4.012 10 C -0.131 4.131 11 C -0.061 4.061 12 N -0.266 5.266 13 C -0.121 4.121 14 C -0.005 4.005 15 O -0.304 6.304 16 C 0.051 3.949 17 H 0.087 0.913 18 C 0.025 3.975 19 H 0.092 0.908 20 C -0.176 4.176 21 C -0.188 4.188 22 C -0.039 4.039 23 O -0.310 6.310 24 C -0.099 4.099 25 H 0.073 0.927 26 H 0.009 0.991 27 H 0.007 0.993 28 H 0.076 0.924 29 H 0.075 0.925 30 H 0.041 0.959 31 H 0.086 0.914 32 H 0.112 0.888 33 H 0.052 0.948 34 H 0.143 0.857 35 H 0.083 0.917 36 H 0.092 0.908 37 H 0.107 0.893 38 H 0.100 0.900 39 H 0.114 0.886 40 H 0.123 0.877 41 H 0.087 0.913 42 H 0.051 0.949 43 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 7.420 -24.864 1.231 25.977 hybrid contribution -0.616 1.359 0.678 1.639 sum 6.804 -23.505 1.909 24.544 Atomic orbital electron populations 1.70109 1.07897 1.27821 1.51696 1.26025 0.95792 1.03517 0.94675 0.85414 0.78668 0.78220 0.78552 1.19713 1.20731 1.18570 1.21678 0.93591 0.92230 1.50537 0.92014 1.18963 0.94386 0.93145 0.94682 1.21523 0.98165 0.92433 1.01014 1.22065 0.93945 0.90130 0.99950 1.62318 1.13143 1.02018 1.49143 1.22984 0.94410 1.01200 0.93464 1.22820 0.93322 0.81023 1.03369 1.87849 1.48942 1.39688 1.53902 1.21875 0.87600 0.92528 0.92938 0.91321 1.22756 0.89272 0.93449 0.92006 0.90846 1.22849 0.98170 0.93702 1.02904 1.22973 0.94797 0.98419 1.02619 1.23655 0.97466 0.79543 1.03275 1.89097 1.60317 1.25280 1.56348 1.22730 0.97178 0.89576 1.00374 0.92746 0.99079 0.99296 0.92384 0.92494 0.95910 0.91359 0.88753 0.94841 0.85667 0.91669 0.90826 0.89340 0.89978 0.88609 0.87712 0.91285 0.94935 0.89805 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.00 13.29 21.45 0.28 -57.71 16 2 C 0.00 -0.15 5.46 84.65 0.46 0.31 16 3 Si 0.97 44.75 29.54 68.60 2.03 46.78 16 4 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 5 H -0.28 -12.73 7.11 99.48 0.71 -12.03 16 6 H -0.26 -11.49 7.11 99.48 0.71 -10.78 16 7 C -0.54 -31.47 9.11 25.60 0.23 -31.24 16 8 H 0.06 3.41 7.74 -2.91 -0.02 3.39 16 9 C 0.03 1.41 4.97 29.85 0.15 1.56 16 10 C -0.09 -3.99 4.42 30.59 0.14 -3.85 16 11 C 0.07 2.49 5.28 86.30 0.46 2.94 16 12 N -0.54 -17.30 4.88 -895.21 -4.36 -21.66 16 13 C 0.01 0.21 4.94 86.32 0.43 0.64 16 14 C 0.07 1.59 7.01 72.02 0.50 2.09 16 15 O -0.38 -9.33 10.15 -148.98 -1.51 -10.85 16 16 C 0.11 2.68 2.48 30.63 0.08 2.75 16 17 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 18 C 0.08 1.74 3.03 31.10 0.09 1.84 16 19 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 20 C -0.14 -2.18 6.34 31.61 0.20 -1.98 16 21 C -0.15 -1.77 7.09 31.61 0.22 -1.55 16 22 C 0.04 0.53 7.63 72.49 0.55 1.09 16 23 O -0.39 -8.81 10.98 -148.98 -1.64 -10.44 16 24 C 0.03 0.86 4.78 86.32 0.41 1.27 16 25 H 0.26 15.31 8.31 -92.71 -0.77 14.54 16 26 H -0.01 -0.54 8.14 -2.39 -0.02 -0.56 16 27 H -0.01 -0.67 8.14 -2.39 -0.02 -0.68 16 28 H 0.06 2.36 6.28 -2.39 -0.01 2.35 16 29 H 0.06 2.41 8.14 -2.39 -0.02 2.39 16 30 H 0.02 0.87 8.08 -2.39 -0.02 0.85 16 31 H 0.07 2.60 8.14 -2.39 -0.02 2.58 16 32 H 0.09 2.73 6.05 -2.39 -0.01 2.71 16 33 H 0.03 0.99 8.14 -2.38 -0.02 0.97 16 34 H 0.13 2.13 8.14 -2.39 -0.02 2.11 16 35 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 36 H 0.07 1.22 7.87 -2.39 -0.02 1.20 16 37 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 38 H 0.08 0.87 8.14 -2.38 -0.02 0.85 16 39 H 0.10 0.77 8.14 -2.39 -0.02 0.75 16 40 H 0.10 1.23 8.14 -2.39 -0.02 1.21 16 41 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 42 H 0.03 0.97 8.14 -2.38 -0.02 0.95 16 43 H 0.08 2.50 7.95 -2.39 -0.02 2.48 16 Total: -1.00 -67.13 337.09 -0.33 -67.46 By element: Atomic # 1 Polarization: 9.61 SS G_CDS: 0.95 Total: 10.56 kcal Atomic # 6 Polarization: -28.06 SS G_CDS: 3.93 Total: -24.14 kcal Atomic # 7 Polarization: -75.29 SS G_CDS: -4.08 Total: -79.37 kcal Atomic # 8 Polarization: -18.14 SS G_CDS: -3.15 Total: -21.29 kcal Atomic # 14 Polarization: 44.75 SS G_CDS: 2.03 Total: 46.78 kcal Total: -67.13 -0.33 -67.46 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000089152763.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.874 kcal (2) G-P(sol) polarization free energy of solvation -67.131 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.004 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.327 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.458 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.331 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds