Wall clock time and date at job start Mon Mar 30 2020 01:12:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46895 * 111.00298 * 2 1 4 4 C 1.50696 * 109.47484 * 293.96036 * 3 2 1 5 5 H 1.08004 * 119.99622 * 359.97438 * 4 3 2 6 6 C 1.37877 * 120.00403 * 179.97438 * 4 3 2 7 7 N 1.31511 * 119.99923 * 359.97438 * 6 4 3 8 8 Si 1.86800 * 120.00197 * 179.97438 * 6 4 3 9 9 H 1.48503 * 109.46872 * 59.99886 * 8 6 4 10 10 H 1.48493 * 109.47347 * 179.97438 * 8 6 4 11 11 H 1.48505 * 109.47045 * 300.00429 * 8 6 4 12 12 C 1.46905 * 111.00251 * 123.96035 * 2 1 3 13 13 C 1.52996 * 109.47088 * 66.04589 * 12 2 1 14 14 C 1.50704 * 109.47023 * 180.02562 * 13 12 2 15 15 C 1.36130 * 120.17091 * 265.00123 * 14 13 12 16 16 C 1.39333 * 120.98770 * 180.23690 * 15 14 13 17 17 C 1.36122 * 120.98705 * 359.43812 * 16 15 14 18 18 C 1.40503 * 119.65379 * 0.57947 * 17 16 15 19 19 C 1.40551 * 121.28531 * 179.74037 * 18 17 16 20 20 C 1.36089 * 119.65002 * 179.97438 * 19 18 17 21 21 C 1.39379 * 120.99662 * 0.02562 * 20 19 18 22 22 C 1.36088 * 120.99109 * 359.95651 * 21 20 19 23 23 C 1.40500 * 120.17476 * 84.97208 * 14 13 12 24 24 H 1.09004 * 109.46934 * 296.04010 * 1 2 3 25 25 H 1.08991 * 109.47485 * 56.04462 * 1 2 3 26 26 H 1.09007 * 109.47002 * 176.04532 * 1 2 3 27 27 H 1.09004 * 109.46650 * 53.95714 * 3 2 1 28 28 H 1.08997 * 109.47667 * 173.95263 * 3 2 1 29 29 H 0.96993 * 120.00315 * 180.02562 * 7 6 4 30 30 H 1.08996 * 109.46562 * 306.04040 * 12 2 1 31 31 H 1.08996 * 109.46960 * 186.04595 * 12 2 1 32 32 H 1.08996 * 109.47867 * 60.00250 * 13 12 2 33 33 H 1.09003 * 109.46912 * 300.00094 * 13 12 2 34 34 H 1.08002 * 119.50229 * 359.94895 * 15 14 13 35 35 H 1.08000 * 119.50342 * 179.71952 * 16 15 14 36 36 H 1.08003 * 120.17549 * 180.28394 * 17 16 15 37 37 H 1.07997 * 120.17348 * 359.92136 * 19 18 17 38 38 H 1.08001 * 119.50325 * 179.97438 * 20 19 18 39 39 H 1.07993 * 119.50671 * 179.97438 * 21 20 19 40 40 H 1.08006 * 120.17518 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6369 2.0472 -1.2983 5 1 1.0745 1.5113 -2.0487 6 6 2.0268 3.3495 -1.5283 7 7 2.7112 4.0022 -0.6145 8 14 1.5829 4.1870 -3.1380 9 1 0.1057 4.2232 -3.2862 10 1 2.1139 5.5737 -3.1375 11 1 2.1755 3.4298 -4.2698 12 6 1.9955 -0.7661 1.1375 13 6 1.6315 -2.2427 0.9701 14 6 2.1711 -3.0285 2.1374 15 6 3.3777 -3.6517 2.0433 16 6 3.8906 -4.3868 3.1102 17 6 3.2051 -4.4936 4.2814 18 6 1.9560 -3.8645 4.4156 19 6 1.2166 -3.9568 5.6074 20 6 0.0104 -3.3338 5.7013 21 6 -0.5056 -2.6039 4.6319 22 6 0.1821 -2.4923 3.4629 23 6 1.4318 -3.1212 3.3285 24 1 -0.3633 0.4512 0.9234 25 1 -0.3634 0.5739 -0.8523 26 1 -0.3633 -1.0253 -0.0709 27 1 1.5611 1.9272 0.8310 28 1 3.0797 1.3444 0.1083 29 1 2.9852 4.9185 -0.7761 30 1 1.5612 -0.3874 2.0627 31 1 3.0797 -0.6612 1.1755 32 1 2.0658 -2.6214 0.0449 33 1 0.5472 -2.3476 0.9321 34 1 3.9438 -3.5791 1.1264 35 1 4.8483 -4.8753 3.0079 36 1 3.6171 -5.0629 5.1015 37 1 1.6033 -4.5200 6.4438 38 1 -0.5559 -3.4066 6.6180 39 1 -1.4655 -2.1194 4.7325 40 1 -0.2301 -1.9231 2.6428 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000101556496.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:12:46 Heat of formation + Delta-G solvation = 37.364548 kcal Electronic energy + Delta-G solvation = -19579.156028 eV Core-core repulsion = 16744.070038 eV Total energy + Delta-G solvation = -2835.085990 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.148 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.49575 -37.12025 -36.34139 -33.86848 -32.42413 -30.36756 -30.24731 -28.29459 -26.92220 -25.29697 -23.41294 -22.95846 -22.46648 -20.49491 -19.90705 -17.51455 -16.94863 -16.32000 -16.20824 -14.96524 -14.89859 -14.41091 -14.14781 -14.08395 -13.69319 -13.48705 -13.21071 -13.01677 -12.63313 -12.38232 -11.97648 -11.81666 -11.68740 -11.21259 -11.17858 -10.97365 -10.87362 -10.82591 -10.51745 -10.48154 -10.32329 -9.92809 -9.64364 -9.19240 -8.60614 -8.42007 -7.80568 -7.22507 -6.00974 -4.02531 0.54096 1.02284 2.05988 3.00519 3.34446 3.38386 3.41357 4.11214 4.42943 4.55926 4.77752 4.82770 4.90370 5.01952 5.10761 5.28679 5.32776 5.34945 5.38411 5.47714 5.51648 5.70806 5.78739 5.95879 6.01473 6.07325 6.14460 6.24437 6.25759 6.27718 6.39725 6.45403 6.53456 6.54782 6.75288 6.76514 6.85987 7.03197 7.31390 7.36585 7.81139 8.10433 8.21486 8.56554 9.04892 9.61522 11.09950 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.029053 B = 0.003757 C = 0.003543 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 963.532882 B = 7450.650238 C = 7900.930024 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 N -0.541 5.541 3 C 0.193 3.807 4 C -0.508 4.508 5 H 0.063 0.937 6 C 0.055 3.945 7 N -0.899 5.899 8 Si 0.898 3.102 9 H -0.277 1.277 10 H -0.288 1.288 11 H -0.276 1.276 12 C 0.063 3.937 13 C -0.081 4.081 14 C -0.054 4.054 15 C -0.121 4.121 16 C -0.108 4.108 17 C -0.122 4.122 18 C -0.050 4.050 19 C -0.113 4.113 20 C -0.117 4.117 21 C -0.125 4.125 22 C -0.097 4.097 23 C -0.048 4.048 24 H 0.010 0.990 25 H 0.074 0.926 26 H 0.046 0.954 27 H -0.010 1.010 28 H 0.029 0.971 29 H 0.262 0.738 30 H 0.023 0.977 31 H 0.068 0.932 32 H 0.082 0.918 33 H 0.072 0.928 34 H 0.125 0.875 35 H 0.121 0.879 36 H 0.123 0.877 37 H 0.123 0.877 38 H 0.120 0.880 39 H 0.121 0.879 40 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.602 -17.240 11.214 20.731 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 N -0.265 5.265 3 C 0.068 3.932 4 C -0.546 4.546 5 H 0.081 0.919 6 C -0.146 4.146 7 N -0.539 5.539 8 Si 0.726 3.274 9 H -0.203 1.203 10 H -0.214 1.214 11 H -0.201 1.201 12 C -0.066 4.066 13 C -0.119 4.119 14 C -0.055 4.055 15 C -0.139 4.139 16 C -0.126 4.126 17 C -0.140 4.140 18 C -0.050 4.050 19 C -0.131 4.131 20 C -0.135 4.135 21 C -0.143 4.143 22 C -0.115 4.115 23 C -0.048 4.048 24 H 0.028 0.972 25 H 0.093 0.907 26 H 0.064 0.936 27 H 0.008 0.992 28 H 0.047 0.953 29 H 0.071 0.929 30 H 0.041 0.959 31 H 0.086 0.914 32 H 0.100 0.900 33 H 0.091 0.909 34 H 0.143 0.857 35 H 0.139 0.861 36 H 0.141 0.859 37 H 0.141 0.859 38 H 0.138 0.862 39 H 0.139 0.861 40 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -2.354 -17.270 10.811 20.510 hybrid contribution -0.386 1.011 0.029 1.082 sum -2.741 -16.259 10.840 19.732 Atomic orbital electron populations 1.22265 0.89168 0.99440 1.00543 1.62105 1.06807 1.17832 1.39768 1.19722 0.95373 0.81534 0.96584 1.21133 1.34891 0.96914 1.01708 0.91885 1.24993 0.95308 0.97346 0.96979 1.69950 1.38370 1.11465 1.34102 0.86557 0.78678 0.78332 0.83813 1.20294 1.21369 1.20142 1.21994 1.00227 0.91655 0.92698 1.20710 1.01089 0.94908 0.95180 1.19888 0.94426 0.96663 0.94501 1.20806 0.95718 0.98017 0.99322 1.20841 0.99742 0.98679 0.93324 1.20936 0.94337 1.00569 0.98110 1.18084 0.95065 0.98027 0.93830 1.20975 0.95142 1.00307 0.96650 1.20830 0.96151 0.97770 0.98712 1.20851 1.00280 0.99611 0.93524 1.21192 0.93815 0.98264 0.98223 1.17999 0.95059 0.98213 0.93554 0.97175 0.90717 0.93573 0.99189 0.95275 0.92879 0.95880 0.91357 0.89970 0.90917 0.85702 0.86113 0.85942 0.85880 0.86247 0.86088 0.85259 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.67 9.14 60.06 0.55 1.22 16 2 N -0.54 -11.78 4.75 -244.38 -1.16 -12.94 16 3 C 0.19 5.12 4.72 -4.98 -0.02 5.10 16 4 C -0.51 -14.41 8.46 -34.44 -0.29 -14.70 16 5 H 0.06 1.76 7.12 -52.48 -0.37 1.38 16 6 C 0.05 1.57 5.46 -17.82 -0.10 1.48 16 7 N -0.90 -27.02 13.29 55.43 0.74 -26.29 16 8 Si 0.90 21.75 29.54 -169.99 -5.02 16.73 16 9 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 10 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 11 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 12 C 0.06 1.16 4.94 -3.82 -0.02 1.14 16 13 C -0.08 -1.22 4.67 -27.88 -0.13 -1.35 16 14 C -0.05 -0.76 5.14 -104.53 -0.54 -1.30 16 15 C -0.12 -1.54 9.57 -39.93 -0.38 -1.92 16 16 C -0.11 -1.21 9.95 -39.93 -0.40 -1.61 16 17 C -0.12 -1.36 9.77 -39.49 -0.39 -1.75 16 18 C -0.05 -0.64 5.74 -106.83 -0.61 -1.25 16 19 C -0.11 -1.23 9.77 -39.48 -0.39 -1.62 16 20 C -0.12 -1.23 9.95 -39.93 -0.40 -1.62 16 21 C -0.12 -1.44 9.95 -39.93 -0.40 -1.83 16 22 C -0.10 -1.29 9.19 -39.48 -0.36 -1.65 16 23 C -0.05 -0.68 5.74 -106.84 -0.61 -1.29 16 24 H 0.01 0.19 8.14 -51.93 -0.42 -0.23 16 25 H 0.07 1.56 6.76 -51.93 -0.35 1.21 16 26 H 0.05 0.75 6.47 -51.93 -0.34 0.41 16 27 H -0.01 -0.28 8.12 -51.93 -0.42 -0.70 16 28 H 0.03 0.83 7.93 -51.93 -0.41 0.41 16 29 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 30 H 0.02 0.43 8.03 -51.93 -0.42 0.02 16 31 H 0.07 1.30 7.93 -51.93 -0.41 0.89 16 32 H 0.08 1.22 8.04 -51.93 -0.42 0.80 16 33 H 0.07 1.04 5.11 -51.93 -0.27 0.77 16 34 H 0.13 1.44 8.05 -52.49 -0.42 1.02 16 35 H 0.12 1.04 8.06 -52.49 -0.42 0.62 16 36 H 0.12 1.05 8.06 -52.48 -0.42 0.62 16 37 H 0.12 1.02 8.06 -52.49 -0.42 0.60 16 38 H 0.12 0.94 8.06 -52.49 -0.42 0.52 16 39 H 0.12 1.15 8.06 -52.49 -0.42 0.72 16 40 H 0.13 1.70 6.49 -52.48 -0.34 1.35 16 LS Contribution 327.84 15.07 4.94 4.94 Total: -1.00 -31.02 327.84 -10.83 -41.85 By element: Atomic # 1 Polarization: 4.50 SS G_CDS: -5.84 Total: -1.34 kcal Atomic # 6 Polarization: -18.48 SS G_CDS: -4.48 Total: -22.96 kcal Atomic # 7 Polarization: -38.80 SS G_CDS: -0.43 Total: -39.22 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.73 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -31.02 -10.83 -41.85 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000101556496.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.219 kcal (2) G-P(sol) polarization free energy of solvation -31.023 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.196 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.831 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.854 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.365 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds