Wall clock time and date at job start Mon Mar 30 2020 01:12:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46895 * 111.00298 * 2 1 4 4 C 1.50696 * 109.47484 * 293.96036 * 3 2 1 5 5 H 1.08004 * 119.99622 * 359.97438 * 4 3 2 6 6 C 1.37877 * 120.00403 * 179.97438 * 4 3 2 7 7 N 1.31511 * 119.99923 * 359.97438 * 6 4 3 8 8 Si 1.86800 * 120.00197 * 179.97438 * 6 4 3 9 9 H 1.48503 * 109.46872 * 59.99886 * 8 6 4 10 10 H 1.48493 * 109.47347 * 179.97438 * 8 6 4 11 11 H 1.48505 * 109.47045 * 300.00429 * 8 6 4 12 12 C 1.46905 * 111.00251 * 123.96035 * 2 1 3 13 13 C 1.52996 * 109.47088 * 66.04589 * 12 2 1 14 14 C 1.50704 * 109.47023 * 180.02562 * 13 12 2 15 15 C 1.36130 * 120.17091 * 265.00123 * 14 13 12 16 16 C 1.39333 * 120.98770 * 180.23690 * 15 14 13 17 17 C 1.36122 * 120.98705 * 359.43812 * 16 15 14 18 18 C 1.40503 * 119.65379 * 0.57947 * 17 16 15 19 19 C 1.40551 * 121.28531 * 179.74037 * 18 17 16 20 20 C 1.36089 * 119.65002 * 179.97438 * 19 18 17 21 21 C 1.39379 * 120.99662 * 0.02562 * 20 19 18 22 22 C 1.36088 * 120.99109 * 359.95651 * 21 20 19 23 23 C 1.40500 * 120.17476 * 84.97208 * 14 13 12 24 24 H 1.09004 * 109.46934 * 296.04010 * 1 2 3 25 25 H 1.08991 * 109.47485 * 56.04462 * 1 2 3 26 26 H 1.09007 * 109.47002 * 176.04532 * 1 2 3 27 27 H 1.09004 * 109.46650 * 53.95714 * 3 2 1 28 28 H 1.08997 * 109.47667 * 173.95263 * 3 2 1 29 29 H 0.96993 * 120.00315 * 180.02562 * 7 6 4 30 30 H 1.08996 * 109.46562 * 306.04040 * 12 2 1 31 31 H 1.08996 * 109.46960 * 186.04595 * 12 2 1 32 32 H 1.08996 * 109.47867 * 60.00250 * 13 12 2 33 33 H 1.09003 * 109.46912 * 300.00094 * 13 12 2 34 34 H 1.08002 * 119.50229 * 359.94895 * 15 14 13 35 35 H 1.08000 * 119.50342 * 179.71952 * 16 15 14 36 36 H 1.08003 * 120.17549 * 180.28394 * 17 16 15 37 37 H 1.07997 * 120.17348 * 359.92136 * 19 18 17 38 38 H 1.08001 * 119.50325 * 179.97438 * 20 19 18 39 39 H 1.07993 * 119.50671 * 179.97438 * 21 20 19 40 40 H 1.08006 * 120.17518 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6369 2.0472 -1.2983 5 1 1.0745 1.5113 -2.0487 6 6 2.0268 3.3495 -1.5283 7 7 2.7112 4.0022 -0.6145 8 14 1.5829 4.1870 -3.1380 9 1 0.1057 4.2232 -3.2862 10 1 2.1139 5.5737 -3.1375 11 1 2.1755 3.4298 -4.2698 12 6 1.9955 -0.7661 1.1375 13 6 1.6315 -2.2427 0.9701 14 6 2.1711 -3.0285 2.1374 15 6 3.3777 -3.6517 2.0433 16 6 3.8906 -4.3868 3.1102 17 6 3.2051 -4.4936 4.2814 18 6 1.9560 -3.8645 4.4156 19 6 1.2166 -3.9568 5.6074 20 6 0.0104 -3.3338 5.7013 21 6 -0.5056 -2.6039 4.6319 22 6 0.1821 -2.4923 3.4629 23 6 1.4318 -3.1212 3.3285 24 1 -0.3633 0.4512 0.9234 25 1 -0.3634 0.5739 -0.8523 26 1 -0.3633 -1.0253 -0.0709 27 1 1.5611 1.9272 0.8310 28 1 3.0797 1.3444 0.1083 29 1 2.9852 4.9185 -0.7761 30 1 1.5612 -0.3874 2.0627 31 1 3.0797 -0.6612 1.1755 32 1 2.0658 -2.6214 0.0449 33 1 0.5472 -2.3476 0.9321 34 1 3.9438 -3.5791 1.1264 35 1 4.8483 -4.8753 3.0079 36 1 3.6171 -5.0629 5.1015 37 1 1.6033 -4.5200 6.4438 38 1 -0.5559 -3.4066 6.6180 39 1 -1.4655 -2.1194 4.7325 40 1 -0.2301 -1.9231 2.6428 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000101556496.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:12:45 Heat of formation + Delta-G solvation = 20.720306 kcal Electronic energy + Delta-G solvation = -19579.877776 eV Core-core repulsion = 16744.070038 eV Total energy + Delta-G solvation = -2835.807739 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.148 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.41566 -38.64557 -37.38220 -35.25222 -34.29986 -31.47640 -31.15745 -29.71279 -28.65980 -26.97421 -24.57719 -23.92880 -23.84551 -21.98768 -21.23204 -18.50688 -18.38273 -17.89981 -17.15689 -16.75337 -16.25687 -16.00300 -15.39040 -15.29355 -14.93186 -14.51838 -14.45855 -14.14841 -13.92377 -13.88744 -13.45755 -13.21577 -12.96086 -12.79614 -12.65577 -12.51621 -12.36470 -12.15444 -12.09339 -11.84950 -11.60690 -11.53715 -11.29638 -10.67741 -10.62165 -9.50938 -9.07880 -8.71141 -8.21135 -6.32151 -0.36434 0.11764 1.13286 1.41130 1.44861 1.52821 2.12019 2.40186 3.10828 3.14958 3.32468 3.73031 3.85739 4.01639 4.08063 4.15424 4.17669 4.31831 4.35993 4.48539 4.51263 4.55677 4.59021 4.67434 4.70488 4.88526 4.92498 5.01332 5.09138 5.13423 5.19336 5.27387 5.29591 5.37073 5.39107 5.56219 5.63723 5.65345 5.78978 5.96566 6.02764 6.15079 6.29921 6.59363 6.83835 7.37781 8.90133 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.029053 B = 0.003757 C = 0.003543 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 963.532882 B = 7450.650238 C = 7900.930024 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 N -0.546 5.546 3 C 0.207 3.793 4 C -0.526 4.526 5 H 0.066 0.934 6 C 0.000 4.000 7 N -0.937 5.937 8 Si 0.972 3.028 9 H -0.266 1.266 10 H -0.283 1.283 11 H -0.267 1.267 12 C 0.070 3.930 13 C -0.064 4.064 14 C -0.081 4.081 15 C -0.124 4.124 16 C -0.118 4.118 17 C -0.115 4.115 18 C -0.073 4.073 19 C -0.111 4.111 20 C -0.123 4.123 21 C -0.124 4.124 22 C -0.126 4.126 23 C -0.067 4.067 24 H 0.008 0.992 25 H 0.059 0.941 26 H 0.082 0.918 27 H -0.041 1.041 28 H 0.000 1.000 29 H 0.265 0.735 30 H 0.015 0.985 31 H 0.054 0.946 32 H 0.082 0.918 33 H 0.078 0.922 34 H 0.131 0.869 35 H 0.148 0.852 36 H 0.154 0.846 37 H 0.153 0.847 38 H 0.149 0.851 39 H 0.138 0.862 40 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.089 -18.824 11.749 22.404 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 N -0.270 5.270 3 C 0.081 3.919 4 C -0.564 4.564 5 H 0.084 0.916 6 C -0.198 4.198 7 N -0.577 5.577 8 Si 0.796 3.204 9 H -0.191 1.191 10 H -0.208 1.208 11 H -0.192 1.192 12 C -0.059 4.059 13 C -0.101 4.101 14 C -0.082 4.082 15 C -0.142 4.142 16 C -0.136 4.136 17 C -0.133 4.133 18 C -0.073 4.073 19 C -0.129 4.129 20 C -0.140 4.140 21 C -0.142 4.142 22 C -0.144 4.144 23 C -0.067 4.067 24 H 0.027 0.973 25 H 0.078 0.922 26 H 0.101 0.899 27 H -0.023 1.023 28 H 0.019 0.981 29 H 0.074 0.926 30 H 0.033 0.967 31 H 0.072 0.928 32 H 0.101 0.899 33 H 0.097 0.903 34 H 0.149 0.851 35 H 0.166 0.834 36 H 0.171 0.829 37 H 0.171 0.829 38 H 0.167 0.833 39 H 0.156 0.844 40 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -2.853 -18.881 11.349 22.213 hybrid contribution -0.225 1.436 -0.010 1.454 sum -3.078 -17.444 11.339 21.032 Atomic orbital electron populations 1.22273 0.87518 1.01466 0.99755 1.62043 1.08337 1.15108 1.41520 1.19383 0.93516 0.83915 0.95105 1.21451 1.35096 0.97571 1.02270 0.91584 1.25964 0.94903 0.98026 1.00863 1.70090 1.39337 1.11908 1.36359 0.85391 0.78903 0.77102 0.78955 1.19074 1.20839 1.19187 1.21973 0.99121 0.93653 0.91108 1.20482 1.01492 0.92173 0.95996 1.19814 0.95570 0.98275 0.94502 1.21053 0.95224 0.97684 1.00262 1.21147 1.00916 0.98616 0.92881 1.21340 0.93494 0.99586 0.98868 1.18450 0.96157 0.98438 0.94273 1.21362 0.94945 0.99889 0.96706 1.21198 0.96397 0.97049 0.99403 1.21173 1.00730 0.99095 0.93193 1.21243 0.94447 0.99631 0.99065 1.18213 0.95494 0.98945 0.94085 0.97299 0.92215 0.89945 1.02331 0.98142 0.92649 0.96685 0.92764 0.89906 0.90331 0.85110 0.83394 0.82870 0.82903 0.83287 0.84405 0.86146 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.49 9.14 127.69 1.17 2.66 16 2 N -0.55 -24.53 4.75 -927.08 -4.41 -28.93 16 3 C 0.21 11.53 4.72 85.56 0.40 11.94 16 4 C -0.53 -30.50 8.46 25.60 0.22 -30.28 16 5 H 0.07 3.71 7.12 -2.91 -0.02 3.69 16 6 C 0.00 0.02 5.46 84.66 0.46 0.48 16 7 N -0.94 -57.62 13.29 21.45 0.28 -57.34 16 8 Si 0.97 44.74 29.54 68.60 2.03 46.77 16 9 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 10 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 11 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 12 C 0.07 2.67 4.94 86.30 0.43 3.10 16 13 C -0.06 -1.94 4.67 29.85 0.14 -1.80 16 14 C -0.08 -2.30 5.14 -19.80 -0.10 -2.40 16 15 C -0.12 -3.11 9.57 22.04 0.21 -2.90 16 16 C -0.12 -2.43 9.95 22.04 0.22 -2.21 16 17 C -0.12 -2.31 9.77 22.33 0.22 -2.09 16 18 C -0.07 -1.76 5.74 -21.30 -0.12 -1.88 16 19 C -0.11 -2.13 9.77 22.33 0.22 -1.92 16 20 C -0.12 -2.29 9.95 22.04 0.22 -2.07 16 21 C -0.12 -2.72 9.95 22.04 0.22 -2.51 16 22 C -0.13 -3.36 9.19 22.33 0.21 -3.15 16 23 C -0.07 -1.88 5.74 -21.30 -0.12 -2.00 16 24 H 0.01 0.33 8.14 -2.39 -0.02 0.32 16 25 H 0.06 2.51 6.76 -2.39 -0.02 2.49 16 26 H 0.08 2.62 6.47 -2.38 -0.02 2.60 16 27 H -0.04 -2.48 8.12 -2.39 -0.02 -2.50 16 28 H 0.00 0.03 7.93 -2.39 -0.02 0.01 16 29 H 0.26 15.29 8.31 -92.71 -0.77 14.52 16 30 H 0.01 0.60 8.03 -2.39 -0.02 0.58 16 31 H 0.05 2.19 7.93 -2.39 -0.02 2.17 16 32 H 0.08 2.46 8.04 -2.39 -0.02 2.44 16 33 H 0.08 2.25 5.11 -2.39 -0.01 2.24 16 34 H 0.13 2.98 8.05 -2.91 -0.02 2.95 16 35 H 0.15 2.16 8.06 -2.91 -0.02 2.13 16 36 H 0.15 2.03 8.06 -2.91 -0.02 2.01 16 37 H 0.15 1.93 8.06 -2.91 -0.02 1.90 16 38 H 0.15 1.83 8.06 -2.91 -0.02 1.81 16 39 H 0.14 2.42 8.06 -2.91 -0.02 2.40 16 40 H 0.12 3.26 6.49 -2.91 -0.02 3.25 16 Total: -1.00 -68.54 327.84 2.90 -65.65 By element: Atomic # 1 Polarization: 9.88 SS G_CDS: 1.01 Total: 10.89 kcal Atomic # 6 Polarization: -41.02 SS G_CDS: 3.98 Total: -37.04 kcal Atomic # 7 Polarization: -82.15 SS G_CDS: -4.12 Total: -86.27 kcal Atomic # 14 Polarization: 44.74 SS G_CDS: 2.03 Total: 46.77 kcal Total: -68.54 2.90 -65.65 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000101556496.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.366 kcal (2) G-P(sol) polarization free energy of solvation -68.541 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.825 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.895 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.646 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.720 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds