Wall clock time and date at job start Mon Mar 30 2020 01:40:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86797 * 120.00353 * 2 1 4 4 H 1.48502 * 109.47432 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.46890 * 299.99896 * 3 2 1 6 6 H 1.48501 * 109.47062 * 59.99944 * 3 2 1 7 7 C 1.37880 * 119.99913 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00010 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99861 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47212 * 179.97438 * 9 7 2 11 11 C 1.52992 * 109.47482 * 179.97438 * 10 9 7 12 12 N 1.46901 * 109.47859 * 179.97438 * 11 10 9 13 13 C 1.46848 * 110.99510 * 294.21467 * 12 11 10 14 14 C 1.53048 * 109.52064 * 174.15537 * 13 12 11 15 15 C 1.53118 * 109.27745 * 59.17773 * 14 13 12 16 16 C 1.53120 * 109.16026 * 302.34502 * 15 14 13 17 17 H 1.09004 * 109.50479 * 297.71302 * 16 15 14 18 18 C 1.53000 * 109.53455 * 177.61355 * 16 15 14 19 19 O 1.43752 * 109.63168 * 179.08184 * 18 16 15 20 20 C 1.44584 * 104.92376 * 215.71407 * 19 18 16 21 21 C 1.54912 * 101.63612 * 36.26738 * 20 19 18 22 22 O 1.43367 * 109.63106 * 59.87221 * 18 16 15 23 23 C 1.46844 * 111.00526 * 170.00090 * 12 11 10 24 24 H 0.97002 * 119.99768 * 359.97438 * 1 2 3 25 25 H 1.09002 * 109.47060 * 299.99817 * 9 7 2 26 26 H 1.09001 * 109.47380 * 59.99905 * 9 7 2 27 27 H 1.09002 * 109.47153 * 299.99998 * 10 9 7 28 28 H 1.08998 * 109.47533 * 59.99628 * 10 9 7 29 29 H 1.09002 * 109.47103 * 300.00247 * 11 10 9 30 30 H 1.09001 * 109.47066 * 60.00169 * 11 10 9 31 31 H 1.08996 * 109.46339 * 294.16557 * 13 12 11 32 32 H 1.08994 * 109.46869 * 54.14232 * 13 12 11 33 33 H 1.08998 * 109.49998 * 299.23732 * 14 13 12 34 34 H 1.08994 * 109.50211 * 179.11499 * 14 13 12 35 35 H 1.08999 * 109.52068 * 182.44201 * 15 14 13 36 36 H 1.08999 * 109.57515 * 62.27822 * 15 14 13 37 37 H 1.08995 * 109.62916 * 299.47832 * 18 16 15 38 38 H 1.09008 * 111.08465 * 278.16198 * 20 19 18 39 39 H 1.08998 * 110.98477 * 154.33400 * 20 19 18 40 40 H 1.08995 * 110.70191 * 205.96431 * 21 20 19 41 41 H 1.08999 * 110.84055 * 82.82438 * 21 20 19 42 42 H 1.09003 * 109.46077 * 305.85847 * 23 12 11 43 43 H 1.08995 * 109.45945 * 65.83669 * 23 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8905 2.3963 -1.2126 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0005 11 6 1.4801 -4.9871 0.0012 12 7 2.4346 -6.1038 0.0006 13 6 3.2030 -6.1384 -1.2504 14 6 4.2830 -7.2189 -1.1574 15 6 3.6200 -8.5760 -0.9059 16 6 2.7871 -8.4985 0.3766 17 1 3.4408 -8.2865 1.2228 18 6 2.0731 -9.8323 0.6043 19 8 1.3075 -9.7691 1.8193 20 6 1.4063 -11.0934 2.3911 21 6 2.8595 -11.4846 2.0239 22 8 3.0415 -10.8824 0.7264 23 6 1.7505 -7.3810 0.2392 24 1 -0.4850 0.8401 0.0004 25 1 0.6239 -2.5567 0.8903 26 1 0.6246 -2.5571 -0.8897 27 1 2.8718 -3.6044 -0.8895 28 1 2.8718 -3.6044 0.8904 29 1 0.8537 -5.0445 0.8914 30 1 0.8532 -5.0451 -0.8886 31 1 2.5344 -6.3639 -2.0811 32 1 3.6727 -5.1688 -1.4152 33 1 4.9601 -6.9867 -0.3353 34 1 4.8429 -7.2550 -2.0918 35 1 4.3880 -9.3416 -0.7958 36 1 2.9727 -8.8274 -1.7460 37 1 1.4105 -10.0410 -0.2356 38 1 0.6905 -11.7740 1.9299 39 1 1.2717 -11.0628 3.4723 40 1 2.9633 -12.5679 1.9636 41 1 3.5661 -11.0707 2.7432 42 1 1.1652 -7.3137 1.1562 43 1 1.0889 -7.6007 -0.5987 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000110843590.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:40:50 Heat of formation + Delta-G solvation = -107.536483 kcal Electronic energy + Delta-G solvation = -21035.319678 eV Core-core repulsion = 17886.641388 eV Total energy + Delta-G solvation = -3148.678290 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.75976 -38.72217 -35.29431 -34.85342 -33.04259 -31.75492 -30.83006 -29.37203 -26.63511 -25.06667 -24.09100 -23.33484 -22.30788 -21.42813 -19.80641 -19.69158 -17.49837 -17.06723 -16.35400 -15.99625 -15.31815 -15.16312 -14.83478 -14.44836 -14.22773 -14.12677 -13.56757 -13.42351 -13.21616 -13.05458 -12.92503 -12.32323 -12.16094 -11.83807 -11.64375 -11.30789 -11.23391 -10.88575 -10.75001 -10.67433 -10.53707 -10.51953 -10.31913 -10.24131 -9.76567 -9.50192 -9.26059 -8.98000 -8.29927 -7.97525 -5.95175 -3.96846 3.11540 3.34372 3.41552 3.46361 3.65761 4.18253 4.28144 4.50926 4.53387 4.66727 4.78698 4.84620 4.84932 5.08784 5.14362 5.21847 5.34292 5.40650 5.40906 5.46135 5.59070 5.67353 5.73153 5.76409 5.83872 5.95489 6.01780 6.14814 6.20559 6.26782 6.39407 6.42048 6.77428 6.78451 6.85868 7.19771 7.46596 7.49429 7.74658 7.89969 8.06005 8.49607 9.10741 9.66906 11.16396 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.036828 B = 0.003164 C = 0.003010 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 760.102330 B = 8848.631758 C = 9301.605479 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.055 3.945 3 Si 0.891 3.109 4 H -0.273 1.273 5 H -0.285 1.285 6 H -0.284 1.284 7 C -0.516 4.516 8 H 0.055 0.945 9 C 0.021 3.979 10 C -0.104 4.104 11 C 0.058 3.942 12 N -0.537 5.537 13 C 0.050 3.950 14 C -0.115 4.115 15 C -0.108 4.108 16 C -0.094 4.094 17 H 0.088 0.912 18 C 0.239 3.761 19 O -0.372 6.372 20 C 0.015 3.985 21 C 0.020 3.980 22 O -0.382 6.382 23 C 0.066 3.934 24 H 0.259 0.741 25 H 0.016 0.984 26 H 0.013 0.987 27 H 0.047 0.953 28 H 0.055 0.945 29 H 0.069 0.931 30 H 0.027 0.973 31 H 0.028 0.972 32 H 0.084 0.916 33 H 0.071 0.929 34 H 0.066 0.934 35 H 0.069 0.931 36 H 0.057 0.943 37 H 0.082 0.918 38 H 0.074 0.926 39 H 0.109 0.891 40 H 0.098 0.902 41 H 0.076 0.924 42 H 0.080 0.920 43 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.903 -24.746 1.557 25.275 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.146 4.146 3 Si 0.719 3.281 4 H -0.197 1.197 5 H -0.211 1.211 6 H -0.210 1.210 7 C -0.555 4.555 8 H 0.074 0.926 9 C -0.016 4.016 10 C -0.142 4.142 11 C -0.069 4.069 12 N -0.262 5.262 13 C -0.078 4.078 14 C -0.152 4.152 15 C -0.146 4.146 16 C -0.113 4.113 17 H 0.107 0.893 18 C 0.143 3.857 19 O -0.292 6.292 20 C -0.061 4.061 21 C -0.056 4.056 22 O -0.303 6.303 23 C -0.062 4.062 24 H 0.069 0.931 25 H 0.034 0.966 26 H 0.031 0.969 27 H 0.065 0.935 28 H 0.074 0.926 29 H 0.088 0.912 30 H 0.046 0.954 31 H 0.047 0.953 32 H 0.102 0.898 33 H 0.089 0.911 34 H 0.084 0.916 35 H 0.088 0.912 36 H 0.076 0.924 37 H 0.100 0.900 38 H 0.093 0.907 39 H 0.127 0.873 40 H 0.116 0.884 41 H 0.095 0.905 42 H 0.098 0.902 43 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges 5.116 -24.414 1.858 25.014 hybrid contribution -0.321 0.678 -0.569 0.941 sum 4.795 -23.736 1.290 24.250 Atomic orbital electron populations 1.69980 1.06056 1.26379 1.51245 1.25034 0.94844 0.99250 0.95465 0.86548 0.80164 0.83855 0.77513 1.19719 1.21091 1.21039 1.21302 0.93087 0.91050 1.50021 0.92632 1.19081 0.94064 0.91431 0.97069 1.21653 0.99126 0.92693 1.00748 1.22272 0.93631 0.90852 1.00186 1.61939 1.26869 1.02680 1.34688 1.22164 0.95548 0.99901 0.90171 1.21575 0.97912 0.93875 1.01877 1.21489 0.99099 0.97937 0.96063 1.21575 0.97692 0.92011 1.00035 0.89329 1.24147 0.84818 0.88496 0.88218 1.89250 1.71820 1.30182 1.37976 1.24343 0.96184 0.84588 1.00992 1.24189 0.96489 0.99507 0.85447 1.88885 1.57633 1.49429 1.34371 1.21932 0.94455 0.88951 1.00905 0.93139 0.96600 0.96867 0.93464 0.92611 0.91210 0.95439 0.95345 0.89811 0.91061 0.91568 0.91228 0.92384 0.90041 0.90735 0.87322 0.88398 0.90549 0.90153 0.95364 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.52 13.29 55.43 0.74 -26.79 16 2 C 0.05 1.61 5.46 -17.82 -0.10 1.51 16 3 Si 0.89 22.09 29.54 -169.99 -5.02 17.07 16 4 H -0.27 -6.61 7.11 56.52 0.40 -6.20 16 5 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 6 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 7 C -0.52 -15.02 9.11 -34.44 -0.31 -15.33 16 8 H 0.06 1.58 7.74 -52.49 -0.41 1.17 16 9 C 0.02 0.56 4.97 -27.88 -0.14 0.42 16 10 C -0.10 -2.25 5.08 -26.74 -0.14 -2.39 16 11 C 0.06 1.06 4.96 -3.83 -0.02 1.04 16 12 N -0.54 -8.63 4.66 -234.67 -1.09 -9.72 16 13 C 0.05 0.73 5.29 -3.83 -0.02 0.71 16 14 C -0.11 -1.37 6.09 -26.65 -0.16 -1.54 16 15 C -0.11 -1.22 5.11 -26.61 -0.14 -1.35 16 16 C -0.09 -1.15 2.37 -90.54 -0.21 -1.36 16 17 H 0.09 1.19 8.14 -51.93 -0.42 0.77 16 18 C 0.24 2.63 3.51 37.16 0.13 2.76 16 19 O -0.37 -4.22 10.73 -59.05 -0.63 -4.86 16 20 C 0.02 0.11 7.95 38.17 0.30 0.42 16 21 C 0.02 0.15 8.07 38.17 0.31 0.46 16 22 O -0.38 -4.04 10.60 -59.05 -0.63 -4.67 16 23 C 0.07 0.92 4.60 -3.83 -0.02 0.91 16 24 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 25 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 26 H 0.01 0.37 8.14 -51.93 -0.42 -0.06 16 27 H 0.05 1.00 6.43 -51.93 -0.33 0.66 16 28 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 29 H 0.07 1.29 7.99 -51.93 -0.41 0.88 16 30 H 0.03 0.51 8.12 -51.93 -0.42 0.09 16 31 H 0.03 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.08 1.30 6.21 -51.93 -0.32 0.98 16 33 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 34 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.07 0.75 7.77 -51.93 -0.40 0.35 16 36 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 38 H 0.07 0.45 8.14 -51.92 -0.42 0.02 16 39 H 0.11 0.59 8.14 -51.93 -0.42 0.16 16 40 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 41 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 42 H 0.08 1.18 7.62 -51.93 -0.40 0.79 16 43 H 0.03 0.39 8.14 -51.93 -0.42 -0.03 16 LS Contribution 336.89 15.07 5.08 5.08 Total: -1.00 -31.89 336.89 -9.83 -41.71 By element: Atomic # 1 Polarization: 3.68 SS G_CDS: -7.75 Total: -4.07 kcal Atomic # 6 Polarization: -13.24 SS G_CDS: -0.51 Total: -13.75 kcal Atomic # 7 Polarization: -36.15 SS G_CDS: -0.36 Total: -36.51 kcal Atomic # 8 Polarization: -8.27 SS G_CDS: -1.26 Total: -9.53 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.07 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -31.89 -9.83 -41.71 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000110843590.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.825 kcal (2) G-P(sol) polarization free energy of solvation -31.886 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.711 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.826 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.711 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.536 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds