Wall clock time and date at job start Mon Mar 30 2020 01:40:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86797 * 120.00353 * 2 1 4 4 H 1.48502 * 109.47432 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.46890 * 299.99896 * 3 2 1 6 6 H 1.48501 * 109.47062 * 59.99944 * 3 2 1 7 7 C 1.37880 * 119.99913 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00010 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99861 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47212 * 179.97438 * 9 7 2 11 11 C 1.52992 * 109.47482 * 179.97438 * 10 9 7 12 12 N 1.46901 * 109.47859 * 179.97438 * 11 10 9 13 13 C 1.46848 * 110.99510 * 294.21467 * 12 11 10 14 14 C 1.53048 * 109.52064 * 174.15537 * 13 12 11 15 15 C 1.53118 * 109.27745 * 59.17773 * 14 13 12 16 16 C 1.53120 * 109.16026 * 302.34502 * 15 14 13 17 17 H 1.09004 * 109.50479 * 297.71302 * 16 15 14 18 18 C 1.53000 * 109.53455 * 177.61355 * 16 15 14 19 19 O 1.43752 * 109.63168 * 179.08184 * 18 16 15 20 20 C 1.44584 * 104.92376 * 215.71407 * 19 18 16 21 21 C 1.54912 * 101.63612 * 36.26738 * 20 19 18 22 22 O 1.43367 * 109.63106 * 59.87221 * 18 16 15 23 23 C 1.46844 * 111.00526 * 170.00090 * 12 11 10 24 24 H 0.97002 * 119.99768 * 359.97438 * 1 2 3 25 25 H 1.09002 * 109.47060 * 299.99817 * 9 7 2 26 26 H 1.09001 * 109.47380 * 59.99905 * 9 7 2 27 27 H 1.09002 * 109.47153 * 299.99998 * 10 9 7 28 28 H 1.08998 * 109.47533 * 59.99628 * 10 9 7 29 29 H 1.09002 * 109.47103 * 300.00247 * 11 10 9 30 30 H 1.09001 * 109.47066 * 60.00169 * 11 10 9 31 31 H 1.08996 * 109.46339 * 294.16557 * 13 12 11 32 32 H 1.08994 * 109.46869 * 54.14232 * 13 12 11 33 33 H 1.08998 * 109.49998 * 299.23732 * 14 13 12 34 34 H 1.08994 * 109.50211 * 179.11499 * 14 13 12 35 35 H 1.08999 * 109.52068 * 182.44201 * 15 14 13 36 36 H 1.08999 * 109.57515 * 62.27822 * 15 14 13 37 37 H 1.08995 * 109.62916 * 299.47832 * 18 16 15 38 38 H 1.09008 * 111.08465 * 278.16198 * 20 19 18 39 39 H 1.08998 * 110.98477 * 154.33400 * 20 19 18 40 40 H 1.08995 * 110.70191 * 205.96431 * 21 20 19 41 41 H 1.08999 * 110.84055 * 82.82438 * 21 20 19 42 42 H 1.09003 * 109.46077 * 305.85847 * 23 12 11 43 43 H 1.08995 * 109.45945 * 65.83669 * 23 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8905 2.3963 -1.2126 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0005 11 6 1.4801 -4.9871 0.0012 12 7 2.4346 -6.1038 0.0006 13 6 3.2030 -6.1384 -1.2504 14 6 4.2830 -7.2189 -1.1574 15 6 3.6200 -8.5760 -0.9059 16 6 2.7871 -8.4985 0.3766 17 1 3.4408 -8.2865 1.2228 18 6 2.0731 -9.8323 0.6043 19 8 1.3075 -9.7691 1.8193 20 6 1.4063 -11.0934 2.3911 21 6 2.8595 -11.4846 2.0239 22 8 3.0415 -10.8824 0.7264 23 6 1.7505 -7.3810 0.2392 24 1 -0.4850 0.8401 0.0004 25 1 0.6239 -2.5567 0.8903 26 1 0.6246 -2.5571 -0.8897 27 1 2.8718 -3.6044 -0.8895 28 1 2.8718 -3.6044 0.8904 29 1 0.8537 -5.0445 0.8914 30 1 0.8532 -5.0451 -0.8886 31 1 2.5344 -6.3639 -2.0811 32 1 3.6727 -5.1688 -1.4152 33 1 4.9601 -6.9867 -0.3353 34 1 4.8429 -7.2550 -2.0918 35 1 4.3880 -9.3416 -0.7958 36 1 2.9727 -8.8274 -1.7460 37 1 1.4105 -10.0410 -0.2356 38 1 0.6905 -11.7740 1.9299 39 1 1.2717 -11.0628 3.4723 40 1 2.9633 -12.5679 1.9636 41 1 3.5661 -11.0707 2.7432 42 1 1.1652 -7.3137 1.1562 43 1 1.0889 -7.6007 -0.5987 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000110843590.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:40:50 Heat of formation + Delta-G solvation = -128.184602 kcal Electronic energy + Delta-G solvation = -21036.215048 eV Core-core repulsion = 17886.641388 eV Total energy + Delta-G solvation = -3149.573660 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.53517 -39.85750 -36.46614 -36.02385 -34.87112 -32.85545 -32.49781 -30.14470 -28.45990 -26.06126 -25.52366 -24.20695 -23.45373 -22.85752 -21.37400 -20.80319 -18.51698 -18.22043 -17.77799 -17.03460 -16.57511 -16.34437 -16.20116 -15.92416 -15.44552 -15.00797 -14.87058 -14.45049 -14.38555 -14.17421 -13.93700 -13.75357 -13.54049 -13.36423 -13.01540 -12.68239 -12.49233 -12.45009 -12.31432 -12.25242 -11.86997 -11.57290 -11.48136 -11.35107 -11.25788 -11.15485 -11.03650 -10.56244 -10.50468 -9.27569 -8.20298 -6.31367 1.39850 1.40359 1.54158 2.40348 2.43947 2.77113 3.12692 3.13134 3.69507 3.79008 3.80913 3.85143 4.05183 4.11795 4.15141 4.21783 4.32597 4.40842 4.44586 4.46874 4.61015 4.62416 4.70603 4.75253 4.76868 4.77298 4.91826 4.97137 4.99612 5.05905 5.11832 5.17202 5.21128 5.32826 5.43758 5.52278 5.73952 5.85494 6.04818 6.11048 6.21355 6.27815 6.85440 7.37824 8.92015 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.036828 B = 0.003164 C = 0.003010 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 760.102330 B = 8848.631758 C = 9301.605479 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.002 4.002 3 Si 0.967 3.033 4 H -0.262 1.262 5 H -0.277 1.277 6 H -0.277 1.277 7 C -0.542 4.542 8 H 0.059 0.941 9 C 0.026 3.974 10 C -0.088 4.088 11 C 0.069 3.931 12 N -0.545 5.545 13 C 0.047 3.953 14 C -0.108 4.108 15 C -0.102 4.102 16 C -0.088 4.088 17 H 0.074 0.926 18 C 0.243 3.757 19 O -0.398 6.398 20 C 0.011 3.989 21 C 0.015 3.985 22 O -0.396 6.396 23 C 0.069 3.931 24 H 0.264 0.736 25 H -0.009 1.009 26 H -0.010 1.010 27 H 0.052 0.948 28 H 0.050 0.950 29 H 0.064 0.936 30 H 0.024 0.976 31 H 0.031 0.969 32 H 0.070 0.930 33 H 0.065 0.935 34 H 0.087 0.913 35 H 0.079 0.921 36 H 0.065 0.935 37 H 0.088 0.912 38 H 0.089 0.911 39 H 0.126 0.874 40 H 0.125 0.875 41 H 0.078 0.922 42 H 0.069 0.931 43 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.160 -25.849 1.387 26.609 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.200 4.200 3 Si 0.791 3.209 4 H -0.186 1.186 5 H -0.202 1.202 6 H -0.203 1.203 7 C -0.580 4.580 8 H 0.077 0.923 9 C -0.012 4.012 10 C -0.126 4.126 11 C -0.059 4.059 12 N -0.269 5.269 13 C -0.081 4.081 14 C -0.146 4.146 15 C -0.140 4.140 16 C -0.108 4.108 17 H 0.092 0.908 18 C 0.147 3.853 19 O -0.319 6.319 20 C -0.065 4.065 21 C -0.060 4.060 22 O -0.317 6.317 23 C -0.059 4.059 24 H 0.073 0.927 25 H 0.009 0.991 26 H 0.009 0.991 27 H 0.070 0.930 28 H 0.069 0.931 29 H 0.083 0.917 30 H 0.043 0.957 31 H 0.049 0.951 32 H 0.089 0.911 33 H 0.083 0.917 34 H 0.105 0.895 35 H 0.097 0.903 36 H 0.084 0.916 37 H 0.106 0.894 38 H 0.107 0.893 39 H 0.144 0.856 40 H 0.143 0.857 41 H 0.096 0.904 42 H 0.088 0.912 43 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges 6.385 -25.546 1.693 26.386 hybrid contribution -0.744 0.962 -0.473 1.305 sum 5.641 -24.584 1.220 25.252 Atomic orbital electron populations 1.70108 1.07827 1.27723 1.51809 1.26009 0.95807 1.03446 0.94706 0.85371 0.79056 0.78607 0.77845 1.18592 1.20235 1.20281 1.21712 0.93514 0.92355 1.50373 0.92285 1.18972 0.94388 0.93117 0.94688 1.21388 0.97950 0.92577 1.00645 1.21995 0.93537 0.90516 0.99847 1.61893 1.26380 1.02830 1.35812 1.22237 0.96042 1.00323 0.89467 1.21548 0.97012 0.93272 1.02763 1.21452 0.99222 0.97606 0.95689 1.21497 0.97043 0.92147 1.00063 0.90800 1.24021 0.84865 0.87881 0.88523 1.89226 1.71922 1.32499 1.38278 1.24614 0.96604 0.83202 1.02088 1.24422 0.96456 1.00925 0.84221 1.88861 1.57635 1.49250 1.35952 1.21914 0.94987 0.88488 1.00488 0.92749 0.99071 0.99148 0.92970 0.93114 0.91703 0.95746 0.95053 0.91121 0.91671 0.89486 0.90277 0.91605 0.89449 0.89266 0.85593 0.85719 0.90424 0.91211 0.94920 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.21 13.29 21.45 0.28 -57.93 16 2 C 0.00 -0.13 5.46 84.66 0.46 0.33 16 3 Si 0.97 45.30 29.54 68.60 2.03 47.33 16 4 H -0.26 -11.72 7.11 99.48 0.71 -11.02 16 5 H -0.28 -12.55 7.11 99.48 0.71 -11.85 16 6 H -0.28 -12.61 7.11 99.48 0.71 -11.91 16 7 C -0.54 -31.96 9.11 25.60 0.23 -31.73 16 8 H 0.06 3.36 7.74 -2.91 -0.02 3.34 16 9 C 0.03 1.43 4.97 29.85 0.15 1.58 16 10 C -0.09 -3.87 5.08 30.59 0.16 -3.71 16 11 C 0.07 2.58 4.96 86.30 0.43 3.01 16 12 N -0.54 -17.43 4.66 -896.37 -4.17 -21.60 16 13 C 0.05 1.33 5.29 86.33 0.46 1.79 16 14 C -0.11 -2.42 6.09 30.65 0.19 -2.23 16 15 C -0.10 -2.11 5.11 30.67 0.16 -1.95 16 16 C -0.09 -2.07 2.37 -10.74 -0.03 -2.09 16 17 H 0.07 1.95 8.14 -2.38 -0.02 1.93 16 18 C 0.24 5.03 3.51 71.98 0.25 5.28 16 19 O -0.40 -8.65 10.73 -126.20 -1.35 -10.01 16 20 C 0.01 0.13 7.95 72.64 0.58 0.71 16 21 C 0.02 0.19 8.07 72.64 0.59 0.78 16 22 O -0.40 -7.63 10.60 -126.20 -1.34 -8.97 16 23 C 0.07 1.92 4.60 86.33 0.40 2.31 16 24 H 0.26 15.32 8.31 -92.71 -0.77 14.55 16 25 H -0.01 -0.54 8.14 -2.39 -0.02 -0.56 16 26 H -0.01 -0.58 8.14 -2.39 -0.02 -0.60 16 27 H 0.05 2.23 6.43 -2.39 -0.02 2.21 16 28 H 0.05 2.27 8.14 -2.39 -0.02 2.25 16 29 H 0.06 2.48 7.99 -2.39 -0.02 2.46 16 30 H 0.02 0.92 8.12 -2.39 -0.02 0.90 16 31 H 0.03 0.87 8.14 -2.39 -0.02 0.85 16 32 H 0.07 2.17 6.21 -2.39 -0.01 2.16 16 33 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 34 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 35 H 0.08 1.52 7.77 -2.39 -0.02 1.50 16 36 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 37 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 38 H 0.09 0.87 8.14 -2.38 -0.02 0.85 16 39 H 0.13 1.11 8.14 -2.39 -0.02 1.09 16 40 H 0.12 0.86 8.14 -2.39 -0.02 0.84 16 41 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 42 H 0.07 2.07 7.62 -2.39 -0.02 2.05 16 43 H 0.03 0.88 8.14 -2.39 -0.02 0.86 16 Total: -1.00 -68.63 336.89 0.41 -68.22 By element: Atomic # 1 Polarization: 7.92 SS G_CDS: 0.95 Total: 8.87 kcal Atomic # 6 Polarization: -29.93 SS G_CDS: 4.02 Total: -25.91 kcal Atomic # 7 Polarization: -75.64 SS G_CDS: -3.89 Total: -79.53 kcal Atomic # 8 Polarization: -16.29 SS G_CDS: -2.69 Total: -18.98 kcal Atomic # 14 Polarization: 45.30 SS G_CDS: 2.03 Total: 47.33 kcal Total: -68.63 0.41 -68.22 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000110843590.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.960 kcal (2) G-P(sol) polarization free energy of solvation -68.635 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.595 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.225 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.185 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds