Wall clock time and date at job start Mon Mar 30 2020 01:45:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86798 * 119.99822 * 2 1 4 4 H 1.48502 * 109.47290 * 239.99605 * 3 2 1 5 5 H 1.48498 * 109.47268 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.47047 * 119.99964 * 3 2 1 7 7 C 1.37883 * 120.00079 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00079 * 180.02562 * 7 2 1 9 9 C 1.50702 * 119.99854 * 0.02562 * 7 2 1 10 10 C 1.52994 * 109.46939 * 179.97438 * 9 7 2 11 11 C 1.53002 * 109.47078 * 180.02562 * 10 9 7 12 12 N 1.46900 * 109.47128 * 180.02562 * 11 10 9 13 13 C 1.46843 * 111.00164 * 295.16221 * 12 11 10 14 14 C 1.53032 * 109.52551 * 174.16134 * 13 12 11 15 15 C 1.53113 * 109.27965 * 59.17706 * 14 13 12 16 16 C 1.53114 * 109.15505 * 302.33918 * 15 14 13 17 17 C 1.46842 * 111.00063 * 170.95053 * 12 11 10 18 18 H 1.08992 * 109.46705 * 65.83310 * 17 12 11 19 19 C 1.52999 * 109.46332 * 305.85383 * 17 12 11 20 20 O 1.44390 * 110.16974 * 302.88404 * 19 17 12 21 21 C 1.44828 * 103.23585 * 201.56796 * 20 19 17 22 22 C 1.54451 * 102.89726 * 36.61456 * 21 20 19 23 23 O 1.43782 * 110.11583 * 186.11243 * 19 17 12 24 24 H 0.96998 * 120.00530 * 0.02562 * 1 2 3 25 25 H 1.09002 * 109.46551 * 60.00100 * 9 7 2 26 26 H 1.08995 * 109.47195 * 300.00335 * 9 7 2 27 27 H 1.09005 * 109.47315 * 59.99895 * 10 9 7 28 28 H 1.09005 * 109.47421 * 300.00218 * 10 9 7 29 29 H 1.08992 * 109.47245 * 59.99937 * 11 10 9 30 30 H 1.09003 * 109.47126 * 299.99715 * 11 10 9 31 31 H 1.09004 * 109.45829 * 294.17860 * 13 12 11 32 32 H 1.09002 * 109.46536 * 54.14080 * 13 12 11 33 33 H 1.09002 * 109.50754 * 179.11779 * 14 13 12 34 34 H 1.09002 * 109.50235 * 299.19269 * 14 13 12 35 35 H 1.09004 * 109.52491 * 62.25311 * 15 14 13 36 36 H 1.09002 * 109.52724 * 182.43812 * 15 14 13 37 37 H 1.08996 * 109.51585 * 297.72674 * 16 15 14 38 38 H 1.09002 * 109.50071 * 177.60101 * 16 15 14 39 39 H 1.09002 * 110.09119 * 64.51406 * 19 17 12 40 40 H 1.08999 * 110.73133 * 278.26200 * 21 20 19 41 41 H 1.08999 * 110.73005 * 154.96500 * 21 20 19 42 42 H 1.09003 * 110.32352 * 97.10244 * 22 21 20 43 43 H 1.08999 * 110.32356 * 219.20175 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6177 0.0000 4 1 3.1029 1.6964 -1.2124 5 1 1.2840 2.7464 0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0005 11 6 1.4802 -4.9871 -0.0001 12 7 2.4348 -6.1036 0.0005 13 6 3.2208 -6.1248 -1.2397 14 6 4.2994 -7.2061 -1.1434 15 6 3.6332 -8.5658 -0.9160 16 6 2.7825 -8.5022 0.3555 17 6 1.7477 -7.3834 0.2155 18 1 1.0979 -7.5940 -0.6338 19 6 0.9081 -7.3031 1.4921 20 8 1.7445 -6.9574 2.6171 21 6 0.9789 -7.4229 3.7550 22 6 0.3317 -8.7220 3.2268 23 8 0.3428 -8.5902 1.7940 24 1 -0.4851 0.8400 -0.0004 25 1 0.6247 -2.5570 -0.8897 26 1 0.6240 -2.5567 0.8902 27 1 2.8719 -3.6043 0.8905 28 1 2.8720 -3.6043 -0.8894 29 1 0.8539 -5.0446 -0.8902 30 1 0.8533 -5.0451 0.8897 31 1 2.5638 -6.3411 -2.0822 32 1 3.6926 -5.1533 -1.3874 33 1 4.8725 -7.2321 -2.0702 34 1 4.9653 -6.9826 -0.3099 35 1 2.9975 -8.8071 -1.7680 36 1 4.3995 -9.3328 -0.8036 37 1 3.4240 -8.2993 1.2130 38 1 2.2718 -9.4543 0.4996 39 1 0.1156 -6.5641 1.3732 40 1 0.2151 -6.6954 4.0297 41 1 1.6338 -7.6341 4.6003 42 1 0.9187 -9.5884 3.5317 43 1 -0.6913 -8.8110 3.5923 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000110876891.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:45:11 Heat of formation + Delta-G solvation = -100.996559 kcal Electronic energy + Delta-G solvation = -21771.068751 eV Core-core repulsion = 18622.674053 eV Total energy + Delta-G solvation = -3148.394698 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.60160 -38.61120 -34.98552 -34.65635 -32.95799 -32.01344 -30.61064 -29.26211 -26.67056 -25.27722 -24.10325 -23.17332 -22.14662 -21.17521 -19.81530 -19.52725 -17.31123 -16.75102 -16.23303 -16.08636 -15.36581 -15.10861 -14.61371 -14.44584 -14.28469 -13.93553 -13.44633 -13.36203 -13.18891 -12.96550 -12.46992 -12.21069 -12.17452 -11.73755 -11.58933 -11.33333 -11.06323 -10.82834 -10.75809 -10.60315 -10.58496 -10.48613 -10.26729 -10.18005 -9.61359 -9.40159 -9.25966 -9.01414 -8.29895 -7.98042 -5.95584 -3.97295 3.34994 3.36582 3.40396 3.43540 3.85144 4.24940 4.49369 4.51763 4.69488 4.75474 4.80498 4.99596 5.04269 5.15378 5.33081 5.34584 5.40117 5.40919 5.46681 5.56198 5.68005 5.74244 5.74466 5.89281 5.93065 5.99637 6.02751 6.13497 6.24969 6.28825 6.37383 6.47750 6.76932 6.80612 6.94606 7.18708 7.42380 7.47039 7.73162 7.88866 8.05146 8.48937 9.09655 9.66335 11.15927 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.020572 B = 0.004542 C = 0.003939 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1360.720273 B = 6163.021181 C = 7106.430477 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.056 3.944 3 Si 0.892 3.108 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.277 1.277 7 C -0.517 4.517 8 H 0.054 0.946 9 C 0.022 3.978 10 C -0.103 4.103 11 C 0.051 3.949 12 N -0.522 5.522 13 C 0.054 3.946 14 C -0.117 4.117 15 C -0.120 4.120 16 C -0.103 4.103 17 C 0.089 3.911 18 H 0.053 0.947 19 C 0.234 3.766 20 O -0.345 6.345 21 C 0.008 3.992 22 C 0.023 3.977 23 O -0.386 6.386 24 H 0.260 0.740 25 H 0.013 0.987 26 H 0.014 0.986 27 H 0.057 0.943 28 H 0.047 0.953 29 H 0.027 0.973 30 H 0.070 0.930 31 H 0.029 0.971 32 H 0.086 0.914 33 H 0.063 0.937 34 H 0.071 0.929 35 H 0.056 0.944 36 H 0.061 0.939 37 H 0.075 0.925 38 H 0.067 0.933 39 H 0.079 0.921 40 H 0.074 0.926 41 H 0.105 0.895 42 H 0.080 0.920 43 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.927 -19.744 3.348 20.238 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.145 4.145 3 Si 0.720 3.280 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.555 4.555 8 H 0.073 0.927 9 C -0.015 4.015 10 C -0.140 4.140 11 C -0.076 4.076 12 N -0.248 5.248 13 C -0.073 4.073 14 C -0.155 4.155 15 C -0.158 4.158 16 C -0.141 4.141 17 C -0.020 4.020 18 H 0.071 0.929 19 C 0.139 3.861 20 O -0.264 6.264 21 C -0.069 4.069 22 C -0.054 4.054 23 O -0.307 6.307 24 H 0.070 0.930 25 H 0.031 0.969 26 H 0.033 0.967 27 H 0.076 0.924 28 H 0.066 0.934 29 H 0.046 0.954 30 H 0.088 0.912 31 H 0.047 0.953 32 H 0.105 0.895 33 H 0.081 0.919 34 H 0.090 0.910 35 H 0.074 0.926 36 H 0.080 0.920 37 H 0.094 0.906 38 H 0.086 0.914 39 H 0.096 0.904 40 H 0.092 0.908 41 H 0.124 0.876 42 H 0.099 0.901 43 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 3.233 -19.599 3.578 20.184 hybrid contribution -0.432 0.946 -0.463 1.138 sum 2.801 -18.654 3.115 19.118 Atomic orbital electron populations 1.69953 1.06059 1.26604 1.51101 1.25019 0.94829 0.99199 0.95424 0.86666 0.79579 0.83177 0.78623 1.20275 1.21346 1.20236 1.21219 0.93018 0.91038 1.50262 0.92729 1.19065 0.94041 0.91442 0.96965 1.21637 0.99107 0.92447 1.00849 1.22386 0.93966 0.91303 0.99914 1.61927 1.25555 1.01391 1.35904 1.22146 0.95319 1.00163 0.89722 1.21600 0.97859 0.94202 1.01803 1.21585 0.98988 0.97430 0.97754 1.21478 0.97128 0.96927 0.98590 1.21640 0.94669 0.91769 0.93885 0.92916 1.24441 0.89688 0.83341 0.88670 1.89640 1.41955 1.80484 1.14304 1.24264 0.96447 0.94447 0.91740 1.23923 1.01591 0.98893 0.81026 1.88853 1.83146 1.37203 1.21500 0.93037 0.96908 0.96717 0.92439 0.93428 0.95444 0.91208 0.95314 0.89542 0.91861 0.91022 0.92554 0.92023 0.90632 0.91428 0.90413 0.90783 0.87644 0.90137 0.90088 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.38 13.29 55.43 0.74 -26.64 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 3 Si 0.89 22.01 29.54 -169.99 -5.02 16.99 16 4 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 5 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 6 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 7 C -0.52 -14.97 9.11 -34.44 -0.31 -15.28 16 8 H 0.05 1.54 7.74 -52.49 -0.41 1.13 16 9 C 0.02 0.59 4.97 -27.89 -0.14 0.46 16 10 C -0.10 -2.21 5.06 -26.73 -0.14 -2.35 16 11 C 0.05 0.94 4.67 -3.82 -0.02 0.92 16 12 N -0.52 -8.40 4.34 -226.70 -0.98 -9.38 16 13 C 0.05 0.79 5.28 -3.84 -0.02 0.77 16 14 C -0.12 -1.41 6.09 -26.66 -0.16 -1.57 16 15 C -0.12 -1.34 6.00 -26.61 -0.16 -1.50 16 16 C -0.10 -1.30 5.05 -26.65 -0.13 -1.44 16 17 C 0.09 1.28 2.04 -67.72 -0.14 1.14 16 18 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 19 C 0.23 3.34 2.89 37.16 0.11 3.45 16 20 O -0.34 -5.11 10.84 -59.28 -0.64 -5.75 16 21 C 0.01 0.09 7.81 37.92 0.30 0.38 16 22 C 0.02 0.22 8.08 37.92 0.31 0.52 16 23 O -0.39 -5.04 10.40 -59.28 -0.62 -5.66 16 24 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 25 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 26 H 0.01 0.41 8.14 -51.93 -0.42 -0.02 16 27 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 28 H 0.05 1.00 6.40 -51.93 -0.33 0.67 16 29 H 0.03 0.50 8.13 -51.93 -0.42 0.08 16 30 H 0.07 1.29 5.81 -51.93 -0.30 0.99 16 31 H 0.03 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.09 1.34 6.17 -51.93 -0.32 1.02 16 33 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 35 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.07 1.04 7.78 -51.93 -0.40 0.64 16 38 H 0.07 0.81 7.59 -51.93 -0.39 0.42 16 39 H 0.08 1.16 6.44 -51.93 -0.33 0.83 16 40 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 41 H 0.11 0.87 8.14 -51.93 -0.42 0.44 16 42 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 43 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 LS Contribution 332.45 15.07 5.01 5.01 Total: -1.00 -31.66 332.45 -9.67 -41.33 By element: Atomic # 1 Polarization: 4.61 SS G_CDS: -7.55 Total: -2.93 kcal Atomic # 6 Polarization: -12.36 SS G_CDS: -0.61 Total: -12.97 kcal Atomic # 7 Polarization: -35.77 SS G_CDS: -0.25 Total: -36.02 kcal Atomic # 8 Polarization: -10.15 SS G_CDS: -1.26 Total: -11.41 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.99 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -31.66 -9.67 -41.33 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000110876891.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.670 kcal (2) G-P(sol) polarization free energy of solvation -31.656 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.326 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.671 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.327 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.997 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds