Wall clock time and date at job start Mon Mar 30 2020 01:45:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86798 * 119.99822 * 2 1 4 4 H 1.48502 * 109.47290 * 239.99605 * 3 2 1 5 5 H 1.48498 * 109.47268 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.47047 * 119.99964 * 3 2 1 7 7 C 1.37883 * 120.00079 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00079 * 180.02562 * 7 2 1 9 9 C 1.50702 * 119.99854 * 0.02562 * 7 2 1 10 10 C 1.52994 * 109.46939 * 179.97438 * 9 7 2 11 11 C 1.53002 * 109.47078 * 180.02562 * 10 9 7 12 12 N 1.46900 * 109.47128 * 180.02562 * 11 10 9 13 13 C 1.46843 * 111.00164 * 295.16221 * 12 11 10 14 14 C 1.53032 * 109.52551 * 174.16134 * 13 12 11 15 15 C 1.53113 * 109.27965 * 59.17706 * 14 13 12 16 16 C 1.53114 * 109.15505 * 302.33918 * 15 14 13 17 17 C 1.46842 * 111.00063 * 170.95053 * 12 11 10 18 18 H 1.08992 * 109.46705 * 65.83310 * 17 12 11 19 19 C 1.52999 * 109.46332 * 305.85383 * 17 12 11 20 20 O 1.44390 * 110.16974 * 302.88404 * 19 17 12 21 21 C 1.44828 * 103.23585 * 201.56796 * 20 19 17 22 22 C 1.54451 * 102.89726 * 36.61456 * 21 20 19 23 23 O 1.43782 * 110.11583 * 186.11243 * 19 17 12 24 24 H 0.96998 * 120.00530 * 0.02562 * 1 2 3 25 25 H 1.09002 * 109.46551 * 60.00100 * 9 7 2 26 26 H 1.08995 * 109.47195 * 300.00335 * 9 7 2 27 27 H 1.09005 * 109.47315 * 59.99895 * 10 9 7 28 28 H 1.09005 * 109.47421 * 300.00218 * 10 9 7 29 29 H 1.08992 * 109.47245 * 59.99937 * 11 10 9 30 30 H 1.09003 * 109.47126 * 299.99715 * 11 10 9 31 31 H 1.09004 * 109.45829 * 294.17860 * 13 12 11 32 32 H 1.09002 * 109.46536 * 54.14080 * 13 12 11 33 33 H 1.09002 * 109.50754 * 179.11779 * 14 13 12 34 34 H 1.09002 * 109.50235 * 299.19269 * 14 13 12 35 35 H 1.09004 * 109.52491 * 62.25311 * 15 14 13 36 36 H 1.09002 * 109.52724 * 182.43812 * 15 14 13 37 37 H 1.08996 * 109.51585 * 297.72674 * 16 15 14 38 38 H 1.09002 * 109.50071 * 177.60101 * 16 15 14 39 39 H 1.09002 * 110.09119 * 64.51406 * 19 17 12 40 40 H 1.08999 * 110.73133 * 278.26200 * 21 20 19 41 41 H 1.08999 * 110.73005 * 154.96500 * 21 20 19 42 42 H 1.09003 * 110.32352 * 97.10244 * 22 21 20 43 43 H 1.08999 * 110.32356 * 219.20175 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6177 0.0000 4 1 3.1029 1.6964 -1.2124 5 1 1.2840 2.7464 0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0005 11 6 1.4802 -4.9871 -0.0001 12 7 2.4348 -6.1036 0.0005 13 6 3.2208 -6.1248 -1.2397 14 6 4.2994 -7.2061 -1.1434 15 6 3.6332 -8.5658 -0.9160 16 6 2.7825 -8.5022 0.3555 17 6 1.7477 -7.3834 0.2155 18 1 1.0979 -7.5940 -0.6338 19 6 0.9081 -7.3031 1.4921 20 8 1.7445 -6.9574 2.6171 21 6 0.9789 -7.4229 3.7550 22 6 0.3317 -8.7220 3.2268 23 8 0.3428 -8.5902 1.7940 24 1 -0.4851 0.8400 -0.0004 25 1 0.6247 -2.5570 -0.8897 26 1 0.6240 -2.5567 0.8902 27 1 2.8719 -3.6043 0.8905 28 1 2.8720 -3.6043 -0.8894 29 1 0.8539 -5.0446 -0.8902 30 1 0.8533 -5.0451 0.8897 31 1 2.5638 -6.3411 -2.0822 32 1 3.6926 -5.1533 -1.3874 33 1 4.8725 -7.2321 -2.0702 34 1 4.9653 -6.9826 -0.3099 35 1 2.9975 -8.8071 -1.7680 36 1 4.3995 -9.3328 -0.8036 37 1 3.4240 -8.2993 1.2130 38 1 2.2718 -9.4543 0.4996 39 1 0.1156 -6.5641 1.3732 40 1 0.2151 -6.6954 4.0297 41 1 1.6338 -7.6341 4.6003 42 1 0.9187 -9.5884 3.5317 43 1 -0.6913 -8.8110 3.5923 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000110876891.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:45:10 Heat of formation + Delta-G solvation = -121.390424 kcal Electronic energy + Delta-G solvation = -21771.953095 eV Core-core repulsion = 18622.674053 eV Total energy + Delta-G solvation = -3149.279042 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.62371 -39.74812 -36.38278 -35.93335 -34.73669 -33.18529 -32.28875 -30.17061 -28.45814 -26.41691 -25.61178 -24.08332 -23.69806 -22.30094 -21.55852 -20.60651 -18.51588 -18.30163 -17.66595 -17.11628 -16.64615 -16.38183 -16.26082 -15.80341 -15.49771 -14.98344 -14.72261 -14.49200 -14.33876 -14.32587 -13.92434 -13.59251 -13.44055 -13.24869 -13.07578 -12.68261 -12.54750 -12.44864 -12.35938 -12.11092 -11.69244 -11.61661 -11.56281 -11.37475 -11.28710 -11.12436 -10.95101 -10.55030 -10.51548 -9.26768 -8.19916 -6.31046 1.39798 1.43317 1.51221 2.34438 2.42072 2.86100 3.08310 3.13032 3.63160 3.70997 3.76740 3.93352 3.99659 4.10172 4.13880 4.25175 4.31784 4.39259 4.43200 4.49717 4.57190 4.64745 4.69364 4.77037 4.80064 4.86329 4.95781 5.00855 5.05145 5.06690 5.15576 5.19975 5.26206 5.33355 5.49192 5.52504 5.73278 5.84776 5.91395 6.11066 6.19462 6.27841 6.84873 7.37991 8.91960 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.020572 B = 0.004542 C = 0.003939 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1360.720273 B = 6163.021181 C = 7106.430477 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.000 4.000 3 Si 0.966 3.034 4 H -0.266 1.266 5 H -0.281 1.281 6 H -0.267 1.267 7 C -0.543 4.543 8 H 0.058 0.942 9 C 0.028 3.972 10 C -0.085 4.085 11 C 0.064 3.936 12 N -0.527 5.527 13 C 0.049 3.951 14 C -0.111 4.111 15 C -0.116 4.116 16 C -0.095 4.095 17 C 0.087 3.913 18 H 0.052 0.948 19 C 0.236 3.764 20 O -0.372 6.372 21 C 0.001 3.999 22 C 0.020 3.980 23 O -0.397 6.397 24 H 0.264 0.736 25 H -0.010 1.010 26 H -0.011 1.011 27 H 0.048 0.952 28 H 0.052 0.948 29 H 0.024 0.976 30 H 0.063 0.937 31 H 0.032 0.968 32 H 0.072 0.928 33 H 0.084 0.916 34 H 0.064 0.936 35 H 0.063 0.937 36 H 0.082 0.918 37 H 0.063 0.937 38 H 0.076 0.924 39 H 0.062 0.938 40 H 0.075 0.925 41 H 0.128 0.872 42 H 0.100 0.900 43 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.212 -20.748 3.443 21.449 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.197 4.197 3 Si 0.790 3.210 4 H -0.191 1.191 5 H -0.207 1.207 6 H -0.192 1.192 7 C -0.581 4.581 8 H 0.077 0.923 9 C -0.010 4.010 10 C -0.123 4.123 11 C -0.064 4.064 12 N -0.254 5.254 13 C -0.078 4.078 14 C -0.149 4.149 15 C -0.153 4.153 16 C -0.133 4.133 17 C -0.022 4.022 18 H 0.070 0.930 19 C 0.140 3.860 20 O -0.292 6.292 21 C -0.075 4.075 22 C -0.056 4.056 23 O -0.318 6.318 24 H 0.072 0.928 25 H 0.009 0.991 26 H 0.008 0.992 27 H 0.067 0.933 28 H 0.071 0.929 29 H 0.042 0.958 30 H 0.082 0.918 31 H 0.050 0.950 32 H 0.091 0.909 33 H 0.102 0.898 34 H 0.082 0.918 35 H 0.081 0.919 36 H 0.101 0.899 37 H 0.082 0.918 38 H 0.094 0.906 39 H 0.080 0.920 40 H 0.093 0.907 41 H 0.146 0.854 42 H 0.118 0.882 43 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 4.527 -20.628 3.680 21.437 hybrid contribution -0.887 1.216 -0.435 1.567 sum 3.639 -19.412 3.244 20.015 Atomic orbital electron populations 1.70088 1.07813 1.27842 1.51660 1.25982 0.95775 1.03346 0.94637 0.85495 0.78291 0.78021 0.79216 1.19089 1.20676 1.19235 1.21639 0.93481 0.92332 1.50637 0.92331 1.18949 0.94333 0.93103 0.94580 1.21361 0.97917 0.92449 1.00576 1.22085 0.93845 0.90911 0.99517 1.61876 1.25050 1.01511 1.36917 1.22239 0.95850 1.00610 0.89115 1.21575 0.96952 0.93735 1.02602 1.21585 0.99324 0.97340 0.97087 1.21415 0.96574 0.96300 0.98984 1.21723 0.95240 0.91253 0.93951 0.93045 1.24259 0.89213 0.83660 0.88852 1.89601 1.42968 1.81041 1.15609 1.24527 0.96821 0.94877 0.91261 1.24173 1.03198 0.99014 0.79233 1.88826 1.83085 1.36300 1.23627 0.92751 0.99138 0.99240 0.93291 0.92892 0.95779 0.91825 0.95011 0.90920 0.89767 0.91768 0.91872 0.89894 0.91808 0.90554 0.92033 0.90654 0.85371 0.88166 0.88056 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.96 13.29 21.45 0.28 -57.67 16 2 C 0.00 0.01 5.46 84.66 0.46 0.48 16 3 Si 0.97 45.13 29.54 68.60 2.03 47.16 16 4 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 5 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 6 H -0.27 -12.03 7.11 99.48 0.71 -11.33 16 7 C -0.54 -31.99 9.11 25.60 0.23 -31.75 16 8 H 0.06 3.32 7.74 -2.91 -0.02 3.30 16 9 C 0.03 1.54 4.97 29.85 0.15 1.69 16 10 C -0.09 -3.78 5.06 30.59 0.15 -3.62 16 11 C 0.06 2.42 4.67 86.30 0.40 2.82 16 12 N -0.53 -17.00 4.34 -871.13 -3.78 -20.77 16 13 C 0.05 1.40 5.28 86.32 0.46 1.86 16 14 C -0.11 -2.47 6.09 30.64 0.19 -2.28 16 15 C -0.12 -2.29 6.00 30.67 0.18 -2.11 16 16 C -0.09 -2.24 5.05 30.65 0.15 -2.09 16 17 C 0.09 2.46 2.04 44.94 0.09 2.55 16 18 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 19 C 0.24 6.73 2.89 71.98 0.21 6.94 16 20 O -0.37 -10.98 10.84 -125.98 -1.37 -12.35 16 21 C 0.00 0.03 7.81 72.48 0.57 0.60 16 22 C 0.02 0.34 8.08 72.48 0.59 0.93 16 23 O -0.40 -9.97 10.40 -125.98 -1.31 -11.28 16 24 H 0.26 15.35 8.31 -92.71 -0.77 14.58 16 25 H -0.01 -0.57 8.14 -2.39 -0.02 -0.59 16 26 H -0.01 -0.64 8.14 -2.39 -0.02 -0.66 16 27 H 0.05 2.23 8.14 -2.38 -0.02 2.21 16 28 H 0.05 2.27 6.40 -2.38 -0.02 2.26 16 29 H 0.02 0.91 8.13 -2.39 -0.02 0.89 16 30 H 0.06 2.47 5.81 -2.39 -0.01 2.46 16 31 H 0.03 0.88 8.14 -2.38 -0.02 0.86 16 32 H 0.07 2.24 6.17 -2.39 -0.01 2.23 16 33 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 34 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 35 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 36 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 37 H 0.06 1.67 7.78 -2.39 -0.02 1.65 16 38 H 0.08 1.68 7.59 -2.39 -0.02 1.66 16 39 H 0.06 1.92 6.44 -2.39 -0.02 1.90 16 40 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 41 H 0.13 1.88 8.14 -2.39 -0.02 1.87 16 42 H 0.10 1.35 8.14 -2.39 -0.02 1.33 16 43 H 0.10 1.34 8.14 -2.39 -0.02 1.32 16 Total: -1.00 -68.50 332.45 0.65 -67.85 By element: Atomic # 1 Polarization: 10.10 SS G_CDS: 0.96 Total: 11.06 kcal Atomic # 6 Polarization: -27.83 SS G_CDS: 3.83 Total: -24.00 kcal Atomic # 7 Polarization: -74.95 SS G_CDS: -3.49 Total: -78.45 kcal Atomic # 8 Polarization: -20.95 SS G_CDS: -2.68 Total: -23.62 kcal Atomic # 14 Polarization: 45.13 SS G_CDS: 2.03 Total: 47.16 kcal Total: -68.50 0.65 -67.85 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000110876891.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.544 kcal (2) G-P(sol) polarization free energy of solvation -68.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.044 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.653 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.846 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.390 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds