Wall clock time and date at job start Mon Mar 30 2020 01:01:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.47062 * 2 1 4 4 N 1.46498 * 109.46733 * 180.02562 * 3 2 1 5 5 C 1.36938 * 119.99989 * 272.83125 * 4 3 2 6 6 H 1.08000 * 119.99800 * 176.39395 * 5 4 3 7 7 C 1.38809 * 119.99846 * 356.40636 * 5 4 3 8 8 N 1.31613 * 120.00183 * 30.18185 * 7 5 4 9 9 Si 1.86799 * 119.99818 * 210.17890 * 7 5 4 10 10 H 1.48501 * 109.47208 * 84.99477 * 9 7 5 11 11 H 1.48500 * 109.47142 * 204.99225 * 9 7 5 12 12 H 1.48502 * 109.47349 * 324.99272 * 9 7 5 13 13 C 1.46501 * 120.00153 * 92.84217 * 4 3 2 14 14 C 1.50699 * 109.46955 * 269.99368 * 13 4 3 15 15 C 1.39377 * 119.51082 * 270.29116 * 14 13 4 16 16 C 1.36091 * 120.99251 * 180.28140 * 15 14 13 17 17 C 1.40536 * 119.64908 * 359.70750 * 16 15 14 18 18 C 1.40543 * 121.27908 * 180.02562 * 17 16 15 19 19 C 1.36096 * 119.65364 * 180.02562 * 18 17 16 20 20 C 1.39374 * 120.98708 * 359.95493 * 19 18 17 21 21 C 1.36091 * 120.98907 * 0.02562 * 20 19 18 22 22 C 1.40536 * 119.65827 * 359.97438 * 21 20 19 23 23 C 1.36092 * 119.50207 * 90.00206 * 14 13 4 24 24 H 1.09000 * 109.47056 * 300.00349 * 1 2 3 25 25 H 1.09010 * 109.46894 * 60.00227 * 1 2 3 26 26 H 1.08999 * 109.46897 * 179.97438 * 1 2 3 27 27 H 1.09005 * 109.47229 * 240.00063 * 2 1 3 28 28 H 1.09001 * 109.47162 * 120.00298 * 2 1 3 29 29 H 1.08989 * 109.47085 * 60.00209 * 3 2 1 30 30 H 1.09004 * 109.46887 * 300.00032 * 3 2 1 31 31 H 0.97006 * 120.00275 * 180.02562 * 8 7 5 32 32 H 1.09006 * 109.47381 * 149.99665 * 13 4 3 33 33 H 1.09002 * 109.47361 * 29.99765 * 13 4 3 34 34 H 1.08000 * 119.50254 * 359.97438 * 15 14 13 35 35 H 1.07998 * 120.17761 * 179.73577 * 16 15 14 36 36 H 1.08003 * 120.17439 * 0.02562 * 18 17 16 37 37 H 1.08002 * 119.50606 * 179.97438 * 19 18 17 38 38 H 1.07997 * 119.50140 * 180.02562 * 20 19 18 39 39 H 1.08000 * 120.16981 * 180.02562 * 21 20 19 40 40 H 1.08004 * 120.17806 * 0.02562 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4424 -0.0006 5 6 4.1902 1.3836 1.1836 6 1 5.2686 1.3248 1.1811 7 6 3.4986 1.3994 2.3870 8 7 2.2870 0.8902 2.4566 9 14 4.2878 2.1435 3.9079 10 1 4.0557 3.6102 3.9188 11 1 3.6870 1.5383 5.1237 12 1 5.7479 1.8734 3.8905 13 6 4.2370 1.5055 -1.2681 14 6 4.4880 0.1080 -1.7732 15 6 5.6501 -0.5610 -1.3931 16 6 5.9098 -1.8214 -1.8360 17 6 4.9916 -2.4631 -2.6846 18 6 5.2250 -3.7643 -3.1617 19 6 4.3136 -4.3541 -3.9824 20 6 3.1487 -3.6874 -4.3578 21 6 2.8890 -2.4270 -3.9150 22 6 3.8068 -1.7853 -3.0660 23 6 3.5736 -0.4840 -2.5890 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8901 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5139 0.8900 29 1 1.6767 1.9563 0.8899 30 1 1.6766 1.9563 -0.8900 31 1 1.8036 0.9015 3.2975 32 1 5.1895 2.0122 -1.1128 33 1 3.6477 2.0565 -2.0010 34 1 6.3575 -0.0700 -0.7413 35 1 6.8165 -2.3259 -1.5366 36 1 6.1230 -4.2933 -2.8786 37 1 4.4956 -5.3540 -4.3480 38 1 2.4415 -4.1784 -5.0098 39 1 1.9819 -1.9228 -4.2139 40 1 2.6755 0.0449 -2.8719 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000122977102.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:01:14 Heat of formation + Delta-G solvation = 51.858515 kcal Electronic energy + Delta-G solvation = -20454.547537 eV Core-core repulsion = 17620.090053 eV Total energy + Delta-G solvation = -2834.457485 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.148 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.16802 -38.54929 -36.91793 -33.85522 -33.70758 -33.12445 -31.06916 -30.12961 -27.35261 -27.21812 -24.18553 -23.88290 -22.73163 -22.28079 -21.70944 -18.63751 -18.17403 -17.64596 -17.01833 -16.67034 -15.72361 -15.53790 -15.38017 -15.03689 -14.74695 -14.37855 -14.32062 -14.18322 -13.94500 -13.55159 -13.38072 -12.94971 -12.72396 -12.68261 -12.47997 -12.20739 -12.07420 -11.97633 -11.81656 -11.59329 -11.56553 -11.45536 -11.10696 -10.70310 -10.16002 -9.33745 -8.86247 -8.62583 -7.79442 -5.01180 -0.24541 0.22090 1.25579 1.48328 1.53310 1.57882 2.19559 2.58607 3.26252 3.30184 3.77987 3.87611 4.05676 4.10070 4.18036 4.27273 4.42926 4.48749 4.57489 4.62245 4.65783 4.71254 4.78900 4.88883 4.97546 4.98624 5.02315 5.17593 5.26643 5.29530 5.45044 5.47142 5.51442 5.56541 5.65114 5.68578 5.77644 5.91846 5.94374 6.06345 6.24203 6.26498 6.37836 7.25574 7.96600 8.36963 9.21634 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.022033 B = 0.005781 C = 0.005153 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1270.531543 B = 4842.694295 C = 5432.133848 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.116 4.116 3 C 0.174 3.826 4 N -0.603 5.603 5 C -0.254 4.254 6 H 0.072 0.928 7 C -0.043 4.043 8 N -0.902 5.902 9 Si 0.942 3.058 10 H -0.291 1.291 11 H -0.302 1.302 12 H -0.278 1.278 13 C 0.180 3.820 14 C -0.092 4.092 15 C -0.110 4.110 16 C -0.120 4.120 17 C -0.079 4.079 18 C -0.115 4.115 19 C -0.126 4.126 20 C -0.121 4.121 21 C -0.122 4.122 22 C -0.068 4.068 23 C -0.111 4.111 24 H 0.038 0.962 25 H 0.052 0.948 26 H 0.043 0.957 27 H 0.029 0.971 28 H 0.053 0.947 29 H 0.058 0.942 30 H 0.022 0.978 31 H 0.244 0.756 32 H 0.058 0.942 33 H 0.064 0.936 34 H 0.114 0.886 35 H 0.142 0.858 36 H 0.143 0.857 37 H 0.150 0.850 38 H 0.148 0.852 39 H 0.135 0.865 40 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.208 -7.281 -13.327 15.346 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.155 4.155 3 C 0.049 3.951 4 N -0.323 5.323 5 C -0.384 4.384 6 H 0.090 0.910 7 C -0.238 4.238 8 N -0.549 5.549 9 Si 0.772 3.228 10 H -0.219 1.219 11 H -0.229 1.229 12 H -0.203 1.203 13 C 0.054 3.946 14 C -0.096 4.096 15 C -0.129 4.129 16 C -0.138 4.138 17 C -0.079 4.079 18 C -0.133 4.133 19 C -0.144 4.144 20 C -0.139 4.139 21 C -0.140 4.140 22 C -0.068 4.068 23 C -0.130 4.130 24 H 0.057 0.943 25 H 0.071 0.929 26 H 0.062 0.938 27 H 0.048 0.952 28 H 0.071 0.929 29 H 0.077 0.923 30 H 0.040 0.960 31 H 0.054 0.946 32 H 0.076 0.924 33 H 0.082 0.918 34 H 0.132 0.868 35 H 0.160 0.840 36 H 0.161 0.839 37 H 0.167 0.833 38 H 0.166 0.834 39 H 0.152 0.848 40 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 2.115 -7.241 -13.170 15.177 hybrid contribution 0.277 0.395 1.390 1.471 sum 2.392 -6.845 -11.780 13.833 Atomic orbital electron populations 1.21529 0.96582 1.00083 1.00388 1.21931 0.94506 0.99529 0.99559 1.20942 0.81745 0.94912 0.97454 1.44552 1.02110 1.84626 1.00986 1.19396 0.90965 1.43649 0.84364 0.90975 1.25249 0.97360 1.01878 0.99353 1.70426 1.14549 1.44953 1.24933 0.85647 0.78113 0.78886 0.80158 1.21873 1.22946 1.20292 1.20011 0.96618 0.90877 0.87131 1.20774 0.93971 1.00112 0.94701 1.20860 0.97361 0.95671 0.98997 1.21203 0.99717 0.94955 0.97882 1.18361 0.94865 0.95711 0.99009 1.21284 1.00722 0.93337 0.97924 1.21171 0.94087 1.01089 0.98055 1.21167 0.98021 0.94526 1.00146 1.21242 0.98917 0.96325 0.97538 1.18368 0.95279 0.94598 0.98514 1.20849 0.98861 0.94501 0.98801 0.94263 0.92880 0.93815 0.95233 0.92881 0.92340 0.96020 0.94624 0.92378 0.91818 0.86771 0.84045 0.83889 0.83252 0.83448 0.84757 0.86082 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.95 9.91 71.98 0.71 -4.24 16 2 C -0.12 -5.32 5.71 30.60 0.17 -5.15 16 3 C 0.17 8.29 4.99 86.38 0.43 8.72 16 4 N -0.60 -29.15 2.52 -706.35 -1.78 -30.92 16 5 C -0.25 -13.57 9.68 84.03 0.81 -12.76 16 6 H 0.07 3.81 7.99 -2.91 -0.02 3.78 16 7 C -0.04 -2.34 4.97 84.86 0.42 -1.91 16 8 N -0.90 -50.72 8.38 21.65 0.18 -50.54 16 9 Si 0.94 44.60 29.65 68.60 2.03 46.64 16 10 H -0.29 -13.77 7.11 99.48 0.71 -13.06 16 11 H -0.30 -14.57 7.11 99.48 0.71 -13.86 16 12 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 13 C 0.18 7.21 5.80 85.63 0.50 7.71 16 14 C -0.09 -3.54 5.39 -20.09 -0.11 -3.65 16 15 C -0.11 -4.05 9.59 22.04 0.21 -3.84 16 16 C -0.12 -3.88 9.77 22.33 0.22 -3.66 16 17 C -0.08 -2.52 5.74 -21.30 -0.12 -2.64 16 18 C -0.11 -2.89 9.77 22.33 0.22 -2.67 16 19 C -0.13 -2.72 9.95 22.04 0.22 -2.50 16 20 C -0.12 -2.70 9.95 22.04 0.22 -2.48 16 21 C -0.12 -3.33 9.77 22.33 0.22 -3.11 16 22 C -0.07 -2.24 5.74 -21.30 -0.12 -2.36 16 23 C -0.11 -3.97 7.34 22.33 0.16 -3.80 16 24 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 25 H 0.05 1.78 8.14 -2.38 -0.02 1.76 16 26 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 27 H 0.03 1.31 5.67 -2.38 -0.01 1.30 16 28 H 0.05 2.92 6.31 -2.39 -0.02 2.90 16 29 H 0.06 3.15 5.82 -2.39 -0.01 3.13 16 30 H 0.02 0.93 7.86 -2.38 -0.02 0.91 16 31 H 0.24 13.56 8.31 -92.70 -0.77 12.79 16 32 H 0.06 2.26 7.98 -2.38 -0.02 2.24 16 33 H 0.06 2.31 7.80 -2.39 -0.02 2.29 16 34 H 0.11 4.13 8.06 -2.91 -0.02 4.10 16 35 H 0.14 3.72 8.06 -2.91 -0.02 3.70 16 36 H 0.14 2.82 8.06 -2.91 -0.02 2.79 16 37 H 0.15 2.18 8.06 -2.91 -0.02 2.16 16 38 H 0.15 2.31 8.06 -2.91 -0.02 2.29 16 39 H 0.13 3.16 8.06 -2.91 -0.02 3.14 16 40 H 0.12 4.10 7.88 -2.91 -0.02 4.07 16 Total: -1.00 -61.28 324.31 5.61 -55.67 By element: Atomic # 1 Polarization: 16.49 SS G_CDS: 1.01 Total: 17.49 kcal Atomic # 6 Polarization: -42.50 SS G_CDS: 4.17 Total: -38.33 kcal Atomic # 7 Polarization: -79.87 SS G_CDS: -1.60 Total: -81.47 kcal Atomic # 14 Polarization: 44.60 SS G_CDS: 2.03 Total: 46.64 kcal Total: -61.28 5.61 -55.67 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000122977102.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.527 kcal (2) G-P(sol) polarization free energy of solvation -61.279 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.610 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.669 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.859 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds