Wall clock time and date at job start Mon Mar 30 2020 01:27:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86801 * 120.00323 * 2 1 4 4 H 1.48495 * 109.46876 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47011 * 300.00013 * 3 2 1 6 6 H 1.48500 * 109.46872 * 60.00172 * 3 2 1 7 7 C 1.37876 * 119.99517 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99776 * 179.97438 * 7 2 1 9 9 C 1.50705 * 120.00349 * 359.97438 * 7 2 1 10 10 C 1.52998 * 109.47390 * 179.97438 * 9 7 2 11 11 C 1.53001 * 109.47149 * 180.02562 * 10 9 7 12 12 N 1.46501 * 109.46986 * 180.02562 * 11 10 9 13 13 C 1.34766 * 120.00014 * 180.02562 * 12 11 10 14 14 O 1.21281 * 120.00078 * 359.97438 * 13 12 11 15 15 C 1.50700 * 120.00402 * 180.02562 * 13 12 11 16 16 O 1.42896 * 109.47766 * 179.97438 * 15 13 12 17 17 C 1.42896 * 114.00446 * 179.97438 * 16 15 13 18 18 C 1.52997 * 109.46906 * 89.99887 * 17 16 15 19 19 C 1.52999 * 109.47317 * 179.97438 * 18 17 16 20 20 C 1.53005 * 109.47159 * 300.00546 * 19 18 17 21 21 C 1.52997 * 109.47452 * 59.99536 * 20 19 18 22 22 C 1.53000 * 109.47231 * 209.99746 * 17 16 15 23 23 H 0.97001 * 119.99948 * 359.97438 * 1 2 3 24 24 H 1.09007 * 109.46820 * 60.00170 * 9 7 2 25 25 H 1.09000 * 109.47127 * 300.00138 * 9 7 2 26 26 H 1.09007 * 109.46863 * 60.00364 * 10 9 7 27 27 H 1.09000 * 109.47235 * 300.00240 * 10 9 7 28 28 H 1.08997 * 109.46932 * 60.00230 * 11 10 9 29 29 H 1.09000 * 109.47185 * 300.00194 * 11 10 9 30 30 H 0.97006 * 119.99906 * 359.97438 * 12 11 10 31 31 H 1.08999 * 109.47429 * 59.99113 * 15 13 12 32 32 H 1.09000 * 109.46801 * 299.99642 * 15 13 12 33 33 H 1.09002 * 109.46984 * 330.00066 * 17 16 15 34 34 H 1.08996 * 109.47853 * 300.00254 * 18 17 16 35 35 H 1.09002 * 109.47153 * 60.00282 * 18 17 16 36 36 H 1.09000 * 109.47486 * 180.02562 * 19 18 17 37 37 H 1.09002 * 109.46716 * 60.00091 * 19 18 17 38 38 H 1.09002 * 109.46935 * 299.99411 * 20 19 18 39 39 H 1.09001 * 109.46812 * 179.97438 * 20 19 18 40 40 H 1.08993 * 109.47194 * 179.97438 * 21 20 19 41 41 H 1.09002 * 109.46695 * 59.99734 * 21 20 19 42 42 H 1.08992 * 109.47399 * 300.00058 * 22 17 16 43 43 H 1.09004 * 109.46724 * 60.00544 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.7092 1.3462 -0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8905 2.3963 1.2125 7 6 2.0044 -1.1941 -0.0005 8 1 3.0844 -1.1941 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 6 2.2450 -3.6622 -0.0018 11 6 1.4799 -4.9872 -0.0025 12 7 2.4319 -6.1007 -0.0031 13 6 1.9826 -7.3713 -0.0042 14 8 0.7902 -7.5929 -0.0043 15 6 2.9618 -8.5169 -0.0043 16 8 2.2473 -9.7544 -0.0050 17 6 3.0872 -10.9105 -0.0057 18 6 3.3869 -11.3239 1.4365 19 6 4.2856 -12.5621 1.4359 20 6 3.5741 -13.7083 0.7141 21 6 3.2744 -13.2949 -0.7281 22 6 2.3762 -12.0569 -0.7276 23 1 -0.4850 0.8401 0.0004 24 1 0.6239 -2.5567 -0.8904 25 1 0.6246 -2.5571 0.8897 26 1 2.8724 -3.6049 0.8878 27 1 2.8710 -3.6041 -0.8922 28 1 0.8529 -5.0442 -0.8922 29 1 0.8536 -5.0455 0.8877 30 1 3.3856 -5.9235 -0.0034 31 1 3.5879 -8.4597 0.8861 32 1 3.5890 -8.4586 -0.8938 33 1 4.0208 -10.6811 -0.5194 34 1 3.8934 -10.5072 1.9509 35 1 2.4533 -11.5533 1.9503 36 1 4.4988 -12.8569 2.4634 37 1 5.2192 -12.3331 0.9221 38 1 2.6405 -13.9374 1.2279 39 1 4.2146 -14.5903 0.7133 40 1 2.7679 -14.1117 -1.2424 41 1 4.2080 -13.0659 -1.2419 42 1 1.4427 -12.2864 -0.2139 43 1 2.1627 -11.7624 -1.7551 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000171501370.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:27:23 Heat of formation + Delta-G solvation = -124.220162 kcal Electronic energy + Delta-G solvation = -19934.656045 eV Core-core repulsion = 16785.254296 eV Total energy + Delta-G solvation = -3149.401749 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.86684 -38.98176 -36.56962 -35.32040 -33.32493 -31.39892 -31.15172 -30.30268 -28.15145 -26.11536 -23.11375 -22.89587 -22.45289 -20.78632 -20.35824 -19.88302 -17.30810 -16.94667 -16.27459 -16.13208 -15.78667 -15.10151 -14.91575 -14.64308 -14.43765 -14.36081 -13.75983 -13.61605 -13.20612 -12.76815 -12.56474 -12.41365 -12.29786 -11.83999 -11.69002 -11.49364 -11.37952 -10.97671 -10.93040 -10.85506 -10.74257 -10.65435 -10.57861 -9.88028 -9.82379 -9.69765 -9.35670 -9.10852 -8.79286 -8.38303 -6.02585 -4.05750 2.75278 2.85025 3.29349 3.36828 3.40231 3.86419 4.34842 4.36540 4.43609 4.60544 4.71896 4.81853 4.90809 4.95389 4.96987 5.04078 5.12267 5.14103 5.23852 5.33208 5.43405 5.61570 5.64377 5.71271 5.74800 5.77180 5.81624 5.83829 5.95708 6.03957 6.15334 6.46228 6.58816 6.79125 6.94874 6.99458 7.63027 7.69036 7.75290 7.96223 8.35932 8.40315 9.01165 9.58492 11.08730 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.060814 B = 0.002300 C = 0.002262 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 460.312009 B =12170.659976 C =12377.923695 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.056 3.944 3 Si 0.893 3.107 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.522 4.522 8 H 0.056 0.944 9 C 0.023 3.977 10 C -0.120 4.120 11 C 0.118 3.882 12 N -0.726 5.726 13 C 0.507 3.493 14 O -0.523 6.523 15 C 0.044 3.956 16 O -0.356 6.356 17 C 0.089 3.911 18 C -0.143 4.143 19 C -0.117 4.117 20 C -0.123 4.123 21 C -0.116 4.116 22 C -0.117 4.117 23 H 0.261 0.739 24 H 0.019 0.981 25 H 0.019 0.981 26 H 0.054 0.946 27 H 0.054 0.946 28 H 0.065 0.935 29 H 0.065 0.935 30 H 0.398 0.602 31 H 0.077 0.923 32 H 0.077 0.923 33 H 0.061 0.939 34 H 0.063 0.937 35 H 0.073 0.927 36 H 0.065 0.935 37 H 0.062 0.938 38 H 0.064 0.936 39 H 0.062 0.938 40 H 0.068 0.932 41 H 0.062 0.938 42 H 0.073 0.927 43 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.132 -26.063 0.444 28.344 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.146 4.146 3 Si 0.721 3.279 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.560 4.560 8 H 0.074 0.926 9 C -0.015 4.015 10 C -0.158 4.158 11 C -0.005 4.005 12 N -0.379 5.379 13 C 0.291 3.709 14 O -0.399 6.399 15 C -0.036 4.036 16 O -0.274 6.274 17 C 0.031 3.969 18 C -0.181 4.181 19 C -0.154 4.154 20 C -0.161 4.161 21 C -0.154 4.154 22 C -0.154 4.154 23 H 0.070 0.930 24 H 0.038 0.962 25 H 0.038 0.962 26 H 0.073 0.927 27 H 0.073 0.927 28 H 0.083 0.917 29 H 0.083 0.917 30 H 0.232 0.768 31 H 0.095 0.905 32 H 0.095 0.905 33 H 0.079 0.921 34 H 0.082 0.918 35 H 0.091 0.909 36 H 0.084 0.916 37 H 0.081 0.919 38 H 0.083 0.917 39 H 0.081 0.919 40 H 0.086 0.914 41 H 0.081 0.919 42 H 0.091 0.909 43 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 9.883 -26.121 0.443 27.932 hybrid contribution 1.211 1.165 0.048 1.681 sum 11.095 -24.956 0.491 27.315 Atomic orbital electron populations 1.69979 1.06055 1.26590 1.50604 1.25044 0.94873 0.99346 0.95302 0.86518 0.80017 0.83739 0.77602 1.19771 1.21004 1.20998 1.21237 0.93017 0.90918 1.50839 0.92587 1.19044 0.93877 0.90857 0.97718 1.21891 0.99773 0.93279 1.00890 1.21661 0.91814 0.84861 1.02119 1.46106 1.10882 1.05552 1.75334 1.20213 0.89592 0.83779 0.77287 1.90731 1.16620 1.84529 1.47984 1.22263 0.94087 0.84992 1.02244 1.88062 1.32343 1.11949 1.95048 1.22180 0.93425 0.85812 0.95516 1.22065 1.00820 0.97994 0.97242 1.21498 0.98402 0.94819 1.00723 1.21588 1.00798 0.97862 0.95829 1.21500 0.99747 0.97211 0.96921 1.21571 0.99412 0.93443 1.01006 0.92966 0.96233 0.96227 0.92690 0.92693 0.91681 0.91691 0.76830 0.90534 0.90465 0.92128 0.91777 0.90853 0.91640 0.91948 0.91706 0.91885 0.91362 0.91883 0.90861 0.91141 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.86 13.29 55.43 0.74 -26.12 16 2 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 3 Si 0.89 21.47 29.54 -169.99 -5.02 16.45 16 4 H -0.27 -6.38 7.11 56.52 0.40 -5.97 16 5 H -0.28 -6.77 7.11 56.52 0.40 -6.36 16 6 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 7 C -0.52 -14.55 9.11 -34.44 -0.31 -14.87 16 8 H 0.06 1.50 7.74 -52.49 -0.41 1.10 16 9 C 0.02 0.58 4.97 -27.88 -0.14 0.44 16 10 C -0.12 -2.34 5.27 -26.73 -0.14 -2.48 16 11 C 0.12 2.09 5.67 -4.04 -0.02 2.07 16 12 N -0.73 -10.32 5.56 -60.30 -0.33 -10.65 16 13 C 0.51 7.78 7.91 -10.99 -0.09 7.70 16 14 O -0.52 -10.65 16.50 -14.35 -0.24 -10.89 16 15 C 0.04 0.49 6.23 36.01 0.22 0.71 16 16 O -0.36 -4.59 9.52 -55.14 -0.52 -5.12 16 17 C 0.09 0.81 2.61 -26.73 -0.07 0.74 16 18 C -0.14 -1.16 5.54 -26.73 -0.15 -1.31 16 19 C -0.12 -0.73 5.92 -26.73 -0.16 -0.88 16 20 C -0.12 -0.73 5.92 -26.73 -0.16 -0.89 16 21 C -0.12 -0.72 5.92 -26.76 -0.16 -0.88 16 22 C -0.12 -0.98 5.57 -26.76 -0.15 -1.13 16 23 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 24 H 0.02 0.52 8.14 -51.92 -0.42 0.10 16 25 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 26 H 0.05 1.02 8.14 -51.92 -0.42 0.59 16 27 H 0.05 1.02 8.14 -51.93 -0.42 0.59 16 28 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 29 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 30 H 0.40 4.30 8.47 -40.82 -0.35 3.96 16 31 H 0.08 0.65 7.87 -51.93 -0.41 0.24 16 32 H 0.08 0.65 8.08 -51.93 -0.42 0.23 16 33 H 0.06 0.46 7.79 -51.93 -0.40 0.06 16 34 H 0.06 0.50 7.87 -51.93 -0.41 0.09 16 35 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 37 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 38 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 39 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 40 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 41 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 42 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 43 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 LS Contribution 350.09 15.07 5.28 5.28 Total: -1.00 -33.60 350.09 -9.39 -42.99 By element: Atomic # 1 Polarization: 5.22 SS G_CDS: -7.87 Total: -2.65 kcal Atomic # 6 Polarization: -7.87 SS G_CDS: -1.42 Total: -9.28 kcal Atomic # 7 Polarization: -37.18 SS G_CDS: 0.40 Total: -36.78 kcal Atomic # 8 Polarization: -15.24 SS G_CDS: -0.76 Total: -16.00 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -33.60 -9.39 -42.99 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171501370.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.228 kcal (2) G-P(sol) polarization free energy of solvation -33.598 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.826 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.394 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.992 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.220 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds