Wall clock time and date at job start Mon Mar 30 2020 00:48:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86801 * 120.00040 * 2 1 4 4 H 1.48500 * 109.46973 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47077 * 299.99652 * 3 2 1 6 6 H 1.48493 * 109.47117 * 60.00091 * 3 2 1 7 7 C 1.38799 * 119.99995 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00427 * 180.02562 * 7 2 1 9 9 S 1.76205 * 120.00084 * 0.02562 * 7 2 1 10 10 C 1.81001 * 99.99929 * 180.02562 * 9 7 2 11 11 C 1.53004 * 109.47002 * 180.02562 * 10 9 7 12 12 C 1.52997 * 109.47307 * 180.02562 * 11 10 9 13 13 N 1.46894 * 109.47148 * 179.97438 * 12 11 10 14 14 C 1.47841 * 111.00150 * 291.51624 * 13 12 11 15 15 C 1.54906 * 104.89584 * 213.58217 * 14 13 12 16 16 C 1.55437 * 101.52062 * 37.06639 * 15 14 13 17 17 C 1.47450 * 111.00005 * 170.67383 * 13 12 11 18 18 H 1.09001 * 109.88749 * 242.82517 * 17 13 12 19 19 C 1.53001 * 109.88623 * 3.85249 * 17 13 12 20 20 C 1.53780 * 113.61485 * 272.58982 * 19 17 13 21 21 C 1.53956 * 87.02216 * 220.05100 * 20 19 17 22 22 C 1.53780 * 113.61213 * 174.98175 * 19 17 13 23 23 H 0.97002 * 120.00292 * 0.02562 * 1 2 3 24 24 H 1.08989 * 109.47349 * 59.99955 * 10 9 7 25 25 H 1.09004 * 109.47215 * 299.99744 * 10 9 7 26 26 H 1.09001 * 109.47523 * 59.99234 * 11 10 9 27 27 H 1.09004 * 109.46679 * 299.99769 * 11 10 9 28 28 H 1.09001 * 109.47548 * 59.99134 * 12 11 10 29 29 H 1.09004 * 109.46968 * 299.99476 * 12 11 10 30 30 H 1.09000 * 110.37092 * 332.46717 * 14 13 12 31 31 H 1.09003 * 110.37319 * 94.69726 * 14 13 12 32 32 H 1.09003 * 110.99297 * 155.21781 * 15 14 13 33 33 H 1.08996 * 110.99118 * 279.03332 * 15 14 13 34 34 H 1.09002 * 110.69163 * 205.98006 * 16 15 14 35 35 H 1.08992 * 110.84381 * 82.83050 * 16 15 14 36 36 H 1.08998 * 112.85276 * 43.78736 * 19 17 13 37 37 H 1.09002 * 113.61616 * 334.56883 * 20 19 17 38 38 H 1.08999 * 113.61690 * 105.46667 * 20 19 17 39 39 H 1.08998 * 113.53260 * 270.81491 * 21 20 19 40 40 H 1.08991 * 113.74457 * 139.94158 * 21 20 19 41 41 H 1.08997 * 113.61983 * 254.52873 * 22 19 17 42 42 H 1.09003 * 113.61314 * 25.34983 * 22 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8916 2.3964 -1.2125 6 1 1.8915 2.3964 1.2125 7 6 2.0102 -1.2020 0.0005 8 1 3.0903 -1.2021 0.0010 9 16 1.1292 -2.7280 0.0005 10 6 2.5158 -3.8914 0.0021 11 6 1.9792 -5.3243 0.0017 12 6 3.1512 -6.3078 0.0037 13 7 2.6361 -7.6834 0.0039 14 6 1.9747 -8.0013 1.2873 15 6 2.2633 -9.5050 1.5223 16 6 3.7134 -9.6317 0.9773 17 6 3.7231 -8.6548 -0.2173 18 1 3.5508 -9.1990 -1.1459 19 6 5.0669 -7.9261 -0.2828 20 6 5.4290 -7.4272 -1.6916 21 6 6.8732 -7.8662 -1.3886 22 6 6.2754 -8.8710 -0.3895 23 1 -0.4851 0.8400 -0.0004 24 1 3.1237 -3.7310 0.8924 25 1 3.1251 -3.7318 -0.8875 26 1 1.3714 -5.4845 -0.8888 27 1 1.3697 -5.4842 0.8911 28 1 3.7587 -6.1475 0.8945 29 1 3.7611 -6.1480 -0.8855 30 1 2.4010 -7.4028 2.0924 31 1 0.9010 -7.8279 1.2141 32 1 2.2201 -9.7498 2.5836 33 1 1.5755 -10.1285 0.9512 34 1 3.9120 -10.6502 0.6438 35 1 4.4391 -9.3261 1.7310 36 1 5.1742 -7.1656 0.4906 37 1 4.9579 -7.9984 -2.4916 38 1 5.3160 -6.3503 -1.8160 39 1 7.4749 -7.0885 -0.9183 40 1 7.3753 -8.3369 -2.2337 41 1 6.8448 -8.9580 0.5358 42 1 6.0358 -9.8382 -0.8315 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000173881581.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:48:11 Heat of formation + Delta-G solvation = 6.593244 kcal Electronic energy + Delta-G solvation = -18644.267922 eV Core-core repulsion = 15943.291539 eV Total energy + Delta-G solvation = -2700.976383 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.151 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.39131 -37.44444 -34.17921 -32.40212 -30.61979 -29.57347 -25.87961 -25.75245 -24.93156 -24.63521 -21.76423 -20.83907 -20.19832 -19.02199 -17.44434 -16.36421 -15.96186 -15.44757 -14.83277 -14.77866 -14.47006 -14.09463 -13.72457 -13.23797 -12.91787 -12.62464 -12.56486 -12.51291 -12.16633 -11.83608 -11.51403 -11.31648 -11.19200 -11.08215 -11.04220 -10.88209 -10.71507 -10.59520 -10.55923 -10.52125 -10.17280 -10.01670 -9.46656 -9.03752 -8.24913 -8.17535 -6.48507 -6.19859 -3.89452 3.22602 3.24242 3.31670 3.59474 3.97210 4.25554 4.41632 4.47073 4.54640 4.61851 4.69166 4.87167 4.96010 5.16099 5.21464 5.29313 5.33691 5.43246 5.48237 5.53844 5.54968 5.59652 5.65361 5.69621 5.72515 5.78877 5.85067 5.87591 5.91189 5.96753 6.03666 6.08681 6.17318 6.23061 6.38800 6.41793 6.67587 6.83175 7.10266 7.20951 7.63623 8.39854 9.26505 10.88427 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.024939 B = 0.003810 C = 0.003405 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1122.489120 B = 7347.495398 C = 8220.679680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.870 5.870 2 C 0.071 3.929 3 Si 0.917 3.083 4 H -0.272 1.272 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.515 4.515 8 H 0.072 0.928 9 S -0.133 6.133 10 C -0.111 4.111 11 C -0.094 4.094 12 C 0.050 3.950 13 N -0.522 5.522 14 C 0.040 3.960 15 C -0.130 4.130 16 C -0.135 4.135 17 C 0.084 3.916 18 H 0.083 0.917 19 C -0.129 4.129 20 C -0.135 4.135 21 C -0.144 4.144 22 C -0.133 4.133 23 H 0.266 0.734 24 H 0.056 0.944 25 H 0.059 0.941 26 H 0.072 0.928 27 H 0.062 0.938 28 H 0.032 0.968 29 H 0.083 0.917 30 H 0.046 0.954 31 H 0.081 0.919 32 H 0.070 0.930 33 H 0.073 0.927 34 H 0.069 0.931 35 H 0.066 0.934 36 H 0.094 0.906 37 H 0.082 0.918 38 H 0.071 0.929 39 H 0.078 0.922 40 H 0.065 0.935 41 H 0.063 0.937 42 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.206 -19.755 0.614 22.244 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.506 5.506 2 C -0.138 4.138 3 Si 0.744 3.256 4 H -0.196 1.196 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.663 4.663 8 H 0.090 0.910 9 S 0.095 5.905 10 C -0.260 4.260 11 C -0.133 4.133 12 C -0.079 4.079 13 N -0.246 5.246 14 C -0.088 4.088 15 C -0.169 4.169 16 C -0.173 4.173 17 C -0.025 4.025 18 H 0.101 0.899 19 C -0.148 4.148 20 C -0.172 4.172 21 C -0.181 4.181 22 C -0.171 4.171 23 H 0.076 0.924 24 H 0.075 0.925 25 H 0.077 0.923 26 H 0.091 0.909 27 H 0.080 0.920 28 H 0.050 0.950 29 H 0.101 0.899 30 H 0.064 0.936 31 H 0.099 0.901 32 H 0.089 0.911 33 H 0.092 0.908 34 H 0.088 0.912 35 H 0.085 0.915 36 H 0.112 0.888 37 H 0.101 0.899 38 H 0.089 0.911 39 H 0.096 0.904 40 H 0.084 0.916 41 H 0.081 0.919 42 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 8.551 -19.850 0.202 21.614 hybrid contribution 2.459 1.455 0.702 2.942 sum 11.009 -18.395 0.905 21.457 Atomic orbital electron populations 1.70034 1.05913 1.27149 1.47454 1.25007 0.95062 0.99047 0.94676 0.86127 0.79656 0.81953 0.77872 1.19638 1.20560 1.20598 1.22742 0.94533 0.90863 1.58204 0.90988 1.84638 1.09693 0.99362 1.96817 1.23223 1.02720 0.97548 1.02523 1.21267 0.97140 0.91877 1.02969 1.22556 0.97037 0.87405 1.00919 1.63702 1.26147 1.02523 1.32220 1.23091 1.00383 0.94896 0.90406 1.22756 0.96483 0.96739 1.00879 1.22846 0.97065 0.99621 0.97793 1.22485 0.88830 0.92671 0.98471 0.89910 1.23118 0.94337 0.98773 0.98604 1.23079 0.96012 1.01440 0.96660 1.22848 0.96732 0.99170 0.99371 1.22863 0.96991 0.97767 0.99436 0.92401 0.92538 0.92259 0.90928 0.91970 0.95026 0.89895 0.93584 0.90096 0.91104 0.90806 0.91179 0.91504 0.88767 0.89901 0.91066 0.90380 0.91641 0.91865 0.90203 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.34 13.22 55.49 0.73 -25.60 16 2 C 0.07 2.04 5.49 -17.43 -0.10 1.95 16 3 Si 0.92 21.79 29.55 -169.99 -5.02 16.77 16 4 H -0.27 -6.31 7.11 56.52 0.40 -5.90 16 5 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 6 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 7 C -0.52 -15.04 9.50 30.94 0.29 -14.75 16 8 H 0.07 2.04 7.80 -52.48 -0.41 1.63 16 9 S -0.13 -3.58 21.44 -107.50 -2.30 -5.88 16 10 C -0.11 -2.31 5.67 37.16 0.21 -2.10 16 11 C -0.09 -1.62 5.25 -26.73 -0.14 -1.76 16 12 C 0.05 0.71 3.60 -3.83 -0.01 0.69 16 13 N -0.52 -6.69 5.17 -223.35 -1.15 -7.85 16 14 C 0.04 0.47 5.74 -2.30 -0.01 0.46 16 15 C -0.13 -1.23 7.10 -24.43 -0.17 -1.40 16 16 C -0.13 -1.22 5.91 -24.75 -0.15 -1.36 16 17 C 0.08 0.88 3.28 -66.72 -0.22 0.66 16 18 H 0.08 0.89 7.89 -51.93 -0.41 0.48 16 19 C -0.13 -1.29 2.04 -89.81 -0.18 -1.47 16 20 C -0.13 -1.35 6.55 -25.83 -0.17 -1.51 16 21 C -0.14 -1.25 8.09 -25.82 -0.21 -1.46 16 22 C -0.13 -1.11 7.03 -25.92 -0.18 -1.29 16 23 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 24 H 0.06 1.17 8.14 -51.92 -0.42 0.74 16 25 H 0.06 1.22 8.14 -51.91 -0.42 0.80 16 26 H 0.07 1.32 8.14 -51.93 -0.42 0.89 16 27 H 0.06 1.09 7.47 -51.93 -0.39 0.70 16 28 H 0.03 0.45 6.59 -51.93 -0.34 0.11 16 29 H 0.08 1.15 4.84 -51.93 -0.25 0.90 16 30 H 0.05 0.57 7.63 -51.93 -0.40 0.17 16 31 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 32 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 33 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 34 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 35 H 0.07 0.61 7.82 -51.93 -0.41 0.20 16 36 H 0.09 1.06 6.16 -51.93 -0.32 0.74 16 37 H 0.08 0.81 7.92 -51.93 -0.41 0.40 16 38 H 0.07 0.79 7.00 -51.93 -0.36 0.42 16 39 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 41 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 42 H 0.08 0.61 8.10 -51.93 -0.42 0.19 16 LS Contribution 334.92 15.07 5.05 5.05 Total: -1.00 -30.70 334.92 -11.22 -41.93 By element: Atomic # 1 Polarization: 6.41 SS G_CDS: -7.48 Total: -1.07 kcal Atomic # 6 Polarization: -22.30 SS G_CDS: -1.04 Total: -23.34 kcal Atomic # 7 Polarization: -33.03 SS G_CDS: -0.42 Total: -33.45 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.77 kcal Atomic # 16 Polarization: -3.58 SS G_CDS: -2.30 Total: -5.88 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -30.70 -11.22 -41.93 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000173881581.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.519 kcal (2) G-P(sol) polarization free energy of solvation -30.703 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.816 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.926 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.593 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds