Wall clock time and date at job start Mon Mar 30 2020 00:45:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86795 * 120.00200 * 2 1 4 4 H 1.48503 * 109.47089 * 270.00128 * 3 2 1 5 5 H 1.48498 * 109.46823 * 29.99559 * 3 2 1 6 6 H 1.48491 * 109.47497 * 149.99669 * 3 2 1 7 7 C 1.37876 * 119.99517 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99635 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00693 * 0.02562 * 7 2 1 10 10 C 1.52995 * 109.47403 * 180.02562 * 9 7 2 11 11 C 1.53002 * 109.47337 * 179.97438 * 10 9 7 12 12 N 1.46903 * 109.47416 * 179.97438 * 11 10 9 13 13 C 1.46434 * 110.98227 * 297.05752 * 12 11 10 14 14 C 1.53269 * 109.72931 * 161.94026 * 13 12 11 15 15 S 1.81869 * 108.44098 * 62.12383 * 14 13 12 16 16 C 1.81962 * 101.98129 * 308.64888 * 15 14 13 17 17 H 1.09005 * 109.70924 * 291.40279 * 16 15 14 18 18 C 1.53015 * 108.95362 * 170.42353 * 16 15 14 19 19 C 1.52944 * 109.69113 * 181.66709 * 18 16 15 20 20 C 1.53031 * 109.35588 * 60.10034 * 19 18 16 21 21 C 1.52940 * 109.37141 * 299.84155 * 20 19 18 22 22 C 1.46604 * 110.99843 * 170.98976 * 12 11 10 23 23 H 1.09007 * 109.46022 * 77.72744 * 22 12 11 24 24 H 0.97000 * 119.99672 * 0.02562 * 1 2 3 25 25 H 1.08996 * 109.47141 * 59.99732 * 9 7 2 26 26 H 1.09000 * 109.46743 * 300.00075 * 9 7 2 27 27 H 1.08996 * 109.47191 * 59.99762 * 10 9 7 28 28 H 1.09000 * 109.47233 * 299.99775 * 10 9 7 29 29 H 1.08996 * 109.47160 * 59.99760 * 11 10 9 30 30 H 1.09000 * 109.46790 * 300.00064 * 11 10 9 31 31 H 1.09001 * 109.42790 * 41.86563 * 13 12 11 32 32 H 1.08997 * 109.39679 * 281.99560 * 13 12 11 33 33 H 1.09002 * 109.63950 * 302.43876 * 14 13 12 34 34 H 1.08999 * 109.81585 * 181.91545 * 14 13 12 35 35 H 1.09006 * 109.44113 * 301.66691 * 18 16 15 36 36 H 1.09003 * 109.44241 * 61.59096 * 18 16 15 37 37 H 1.09005 * 109.43086 * 300.16770 * 19 18 16 38 38 H 1.09001 * 109.53687 * 180.09735 * 19 18 16 39 39 H 1.09005 * 109.48604 * 179.87102 * 20 19 18 40 40 H 1.09001 * 109.49080 * 59.81820 * 20 19 18 41 41 H 1.08998 * 109.44008 * 180.24417 * 21 20 19 42 42 H 1.08999 * 109.44167 * 300.17210 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6526 0.6999 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2511 -2.4992 0.0005 10 6 2.2453 -3.6621 0.0018 11 6 1.4803 -4.9871 0.0025 12 7 2.4349 -6.1037 0.0031 13 6 3.2484 -6.0988 -1.2145 14 6 4.5009 -6.9565 -1.0033 15 16 3.9783 -8.6682 -0.6799 16 6 2.7614 -8.4458 0.6546 17 1 3.2678 -8.1205 1.5634 18 6 2.0371 -9.7724 0.8929 19 6 0.9803 -9.5938 1.9840 20 6 -0.0327 -8.5359 1.5408 21 6 0.6894 -7.2078 1.3090 22 6 1.7488 -7.3814 0.2181 23 1 1.2680 -7.6958 -0.7084 24 1 -0.4849 0.8401 -0.0004 25 1 0.6247 -2.5571 -0.8896 26 1 0.6241 -2.5567 0.8903 27 1 2.8712 -3.6039 0.8922 28 1 2.8726 -3.6048 -0.8877 29 1 0.8540 -5.0455 -0.8877 30 1 0.8533 -5.0442 0.8922 31 1 3.5445 -5.0762 -1.4485 32 1 2.6656 -6.5055 -2.0409 33 1 5.0646 -6.5781 -0.1505 34 1 5.1243 -6.9264 -1.8970 35 1 1.5534 -10.0926 -0.0301 36 1 2.7576 -10.5281 1.2059 37 1 1.4628 -9.2714 2.9068 38 1 0.4672 -10.5406 2.1529 39 1 -0.7883 -8.4086 2.3161 40 1 -0.5114 -8.8560 0.6153 41 1 -0.0318 -6.4523 0.9974 42 1 1.1707 -6.8903 2.2340 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000177199213.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:45:15 Heat of formation + Delta-G solvation = -22.006607 kcal Electronic energy + Delta-G solvation = -19146.316811 eV Core-core repulsion = 16444.100246 eV Total energy + Delta-G solvation = -2702.216565 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.151 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.56803 -36.61002 -33.81402 -32.00611 -31.14880 -30.73088 -28.72237 -25.98985 -23.57776 -23.06788 -22.40102 -20.81786 -19.91301 -19.69347 -16.86837 -16.31729 -15.75836 -15.07604 -14.92244 -14.86749 -14.45851 -14.37456 -14.10173 -13.29921 -13.19116 -12.79477 -12.48545 -12.29876 -12.17820 -11.96338 -11.65191 -11.43231 -11.37096 -11.27209 -10.88290 -10.82560 -10.68370 -10.53022 -10.34132 -10.19770 -9.59198 -9.54693 -9.34779 -9.07147 -8.35364 -8.18500 -7.69441 -6.00790 -4.02925 1.75192 2.50858 3.31345 3.37685 3.41256 3.82510 4.45703 4.47954 4.69045 4.73780 4.91303 4.97460 5.09324 5.16806 5.24349 5.27322 5.29602 5.33528 5.35377 5.58889 5.65567 5.68969 5.80949 5.83260 5.87751 5.91199 5.95476 5.99234 6.02141 6.10108 6.28150 6.30670 6.66514 6.71581 7.07917 7.29760 7.31002 7.66547 7.80917 7.99264 8.42467 9.04127 9.61250 11.10642 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.027589 B = 0.004135 C = 0.003695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1014.654016 B = 6769.526363 C = 7575.440997 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.056 3.944 3 Si 0.891 3.109 4 H -0.281 1.281 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.519 4.519 8 H 0.054 0.946 9 C 0.023 3.977 10 C -0.106 4.106 11 C 0.054 3.946 12 N -0.549 5.549 13 C 0.051 3.949 14 C -0.069 4.069 15 S -0.292 6.292 16 C -0.028 4.028 17 H 0.095 0.905 18 C -0.099 4.099 19 C -0.114 4.114 20 C -0.119 4.119 21 C -0.120 4.120 22 C 0.093 3.907 23 H 0.050 0.950 24 H 0.260 0.740 25 H 0.013 0.987 26 H 0.016 0.984 27 H 0.055 0.945 28 H 0.047 0.953 29 H 0.029 0.971 30 H 0.081 0.919 31 H 0.098 0.902 32 H 0.043 0.957 33 H 0.091 0.909 34 H 0.103 0.897 35 H 0.070 0.930 36 H 0.070 0.930 37 H 0.065 0.935 38 H 0.066 0.934 39 H 0.067 0.933 40 H 0.062 0.938 41 H 0.076 0.924 42 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.126 -19.477 1.326 19.771 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.144 4.144 3 Si 0.719 3.281 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.557 4.557 8 H 0.073 0.927 9 C -0.015 4.015 10 C -0.144 4.144 11 C -0.072 4.072 12 N -0.274 5.274 13 C -0.079 4.079 14 C -0.218 4.218 15 S -0.063 6.063 16 C -0.158 4.158 17 H 0.114 0.886 18 C -0.138 4.138 19 C -0.153 4.153 20 C -0.157 4.157 21 C -0.159 4.159 22 C -0.017 4.017 23 H 0.068 0.932 24 H 0.070 0.930 25 H 0.032 0.968 26 H 0.034 0.966 27 H 0.074 0.926 28 H 0.066 0.934 29 H 0.047 0.953 30 H 0.099 0.901 31 H 0.116 0.884 32 H 0.061 0.939 33 H 0.109 0.891 34 H 0.122 0.878 35 H 0.089 0.911 36 H 0.089 0.911 37 H 0.084 0.916 38 H 0.085 0.915 39 H 0.086 0.914 40 H 0.081 0.919 41 H 0.095 0.905 42 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 3.696 -20.245 1.173 20.613 hybrid contribution -0.361 1.994 -0.185 2.035 sum 3.335 -18.251 0.987 18.580 Atomic orbital electron populations 1.69968 1.06057 1.26566 1.50978 1.25021 0.94837 0.99240 0.95347 0.86604 0.79886 0.83504 0.78085 1.20698 1.21216 1.19860 1.21238 0.93019 0.91035 1.50421 0.92724 1.19060 0.93997 0.91353 0.97093 1.21716 0.99202 0.92808 1.00682 1.22403 0.93856 0.90237 1.00736 1.61287 1.25945 1.02972 1.37170 1.22291 0.93282 1.01264 0.91038 1.23503 1.00231 0.92670 1.05394 1.86746 1.54739 1.14707 1.50087 1.23292 0.96088 0.98091 0.98282 0.88648 1.21371 0.97766 0.94814 0.99871 1.21540 0.96414 0.99158 0.98207 1.21558 0.97794 0.94856 1.01516 1.21826 0.97317 0.97611 0.99113 1.21782 0.92787 0.89081 0.98053 0.93232 0.93033 0.96834 0.96599 0.92600 0.93450 0.95283 0.90067 0.88412 0.93907 0.89064 0.87838 0.91140 0.91149 0.91596 0.91521 0.91435 0.91942 0.90533 0.90757 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.91 13.29 55.43 0.74 -26.17 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 3 Si 0.89 21.66 29.54 -169.99 -5.02 16.64 16 4 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 5 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 6 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 7 C -0.52 -14.67 9.11 -34.44 -0.31 -14.99 16 8 H 0.05 1.51 7.74 -52.48 -0.41 1.10 16 9 C 0.02 0.58 4.97 -27.89 -0.14 0.44 16 10 C -0.11 -2.16 5.06 -26.73 -0.14 -2.29 16 11 C 0.05 0.91 4.33 -3.82 -0.02 0.90 16 12 N -0.55 -8.07 4.32 -226.90 -0.98 -9.05 16 13 C 0.05 0.70 5.30 -3.94 -0.02 0.68 16 14 C -0.07 -0.85 6.69 37.30 0.25 -0.60 16 15 S -0.29 -3.70 21.72 -107.50 -2.34 -6.03 16 16 C -0.03 -0.33 2.67 -26.59 -0.07 -0.40 16 17 H 0.10 1.20 8.14 -51.93 -0.42 0.78 16 18 C -0.10 -0.96 5.16 -26.75 -0.14 -1.09 16 19 C -0.11 -0.96 5.93 -26.74 -0.16 -1.12 16 20 C -0.12 -1.11 5.93 -26.75 -0.16 -1.27 16 21 C -0.12 -1.39 4.27 -26.74 -0.11 -1.50 16 22 C 0.09 1.19 1.80 -67.71 -0.12 1.06 16 23 H 0.05 0.68 7.92 -51.93 -0.41 0.27 16 24 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 25 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 26 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 28 H 0.05 0.94 6.15 -51.93 -0.32 0.62 16 29 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.08 1.35 5.60 -51.93 -0.29 1.06 16 31 H 0.10 1.43 5.71 -51.93 -0.30 1.13 16 32 H 0.04 0.60 7.91 -51.93 -0.41 0.19 16 33 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 34 H 0.10 1.10 8.14 -51.93 -0.42 0.68 16 35 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 37 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 38 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 39 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 40 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 41 H 0.08 0.96 6.15 -51.93 -0.32 0.64 16 42 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 LS Contribution 326.34 15.07 4.92 4.92 Total: -1.00 -29.41 326.34 -11.43 -40.83 By element: Atomic # 1 Polarization: 5.04 SS G_CDS: -7.51 Total: -2.47 kcal Atomic # 6 Polarization: -17.44 SS G_CDS: -1.23 Total: -18.67 kcal Atomic # 7 Polarization: -34.97 SS G_CDS: -0.24 Total: -35.22 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Atomic # 16 Polarization: -3.70 SS G_CDS: -2.34 Total: -6.03 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -29.41 -11.43 -40.83 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000177199213.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.828 kcal (2) G-P(sol) polarization free energy of solvation -29.409 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.581 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.426 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.835 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.007 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds