Wall clock time and date at job start Mon Mar 30 2020 00:45:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86795 * 120.00200 * 2 1 4 4 H 1.48503 * 109.47089 * 270.00128 * 3 2 1 5 5 H 1.48498 * 109.46823 * 29.99559 * 3 2 1 6 6 H 1.48491 * 109.47497 * 149.99669 * 3 2 1 7 7 C 1.37876 * 119.99517 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99635 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00693 * 0.02562 * 7 2 1 10 10 C 1.52995 * 109.47403 * 180.02562 * 9 7 2 11 11 C 1.53002 * 109.47337 * 179.97438 * 10 9 7 12 12 N 1.46903 * 109.47416 * 179.97438 * 11 10 9 13 13 C 1.46434 * 110.98227 * 297.05752 * 12 11 10 14 14 C 1.53269 * 109.72931 * 161.94026 * 13 12 11 15 15 S 1.81869 * 108.44098 * 62.12383 * 14 13 12 16 16 C 1.81962 * 101.98129 * 308.64888 * 15 14 13 17 17 H 1.09005 * 109.70924 * 291.40279 * 16 15 14 18 18 C 1.53015 * 108.95362 * 170.42353 * 16 15 14 19 19 C 1.52944 * 109.69113 * 181.66709 * 18 16 15 20 20 C 1.53031 * 109.35588 * 60.10034 * 19 18 16 21 21 C 1.52940 * 109.37141 * 299.84155 * 20 19 18 22 22 C 1.46604 * 110.99843 * 170.98976 * 12 11 10 23 23 H 1.09007 * 109.46022 * 77.72744 * 22 12 11 24 24 H 0.97000 * 119.99672 * 0.02562 * 1 2 3 25 25 H 1.08996 * 109.47141 * 59.99732 * 9 7 2 26 26 H 1.09000 * 109.46743 * 300.00075 * 9 7 2 27 27 H 1.08996 * 109.47191 * 59.99762 * 10 9 7 28 28 H 1.09000 * 109.47233 * 299.99775 * 10 9 7 29 29 H 1.08996 * 109.47160 * 59.99760 * 11 10 9 30 30 H 1.09000 * 109.46790 * 300.00064 * 11 10 9 31 31 H 1.09001 * 109.42790 * 41.86563 * 13 12 11 32 32 H 1.08997 * 109.39679 * 281.99560 * 13 12 11 33 33 H 1.09002 * 109.63950 * 302.43876 * 14 13 12 34 34 H 1.08999 * 109.81585 * 181.91545 * 14 13 12 35 35 H 1.09006 * 109.44113 * 301.66691 * 18 16 15 36 36 H 1.09003 * 109.44241 * 61.59096 * 18 16 15 37 37 H 1.09005 * 109.43086 * 300.16770 * 19 18 16 38 38 H 1.09001 * 109.53687 * 180.09735 * 19 18 16 39 39 H 1.09005 * 109.48604 * 179.87102 * 20 19 18 40 40 H 1.09001 * 109.49080 * 59.81820 * 20 19 18 41 41 H 1.08998 * 109.44008 * 180.24417 * 21 20 19 42 42 H 1.08999 * 109.44167 * 300.17210 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6526 0.6999 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2511 -2.4992 0.0005 10 6 2.2453 -3.6621 0.0018 11 6 1.4803 -4.9871 0.0025 12 7 2.4349 -6.1037 0.0031 13 6 3.2484 -6.0988 -1.2145 14 6 4.5009 -6.9565 -1.0033 15 16 3.9783 -8.6682 -0.6799 16 6 2.7614 -8.4458 0.6546 17 1 3.2678 -8.1205 1.5634 18 6 2.0371 -9.7724 0.8929 19 6 0.9803 -9.5938 1.9840 20 6 -0.0327 -8.5359 1.5408 21 6 0.6894 -7.2078 1.3090 22 6 1.7488 -7.3814 0.2181 23 1 1.2680 -7.6958 -0.7084 24 1 -0.4849 0.8401 -0.0004 25 1 0.6247 -2.5571 -0.8896 26 1 0.6241 -2.5567 0.8903 27 1 2.8712 -3.6039 0.8922 28 1 2.8726 -3.6048 -0.8877 29 1 0.8540 -5.0455 -0.8877 30 1 0.8533 -5.0442 0.8922 31 1 3.5445 -5.0762 -1.4485 32 1 2.6656 -6.5055 -2.0409 33 1 5.0646 -6.5781 -0.1505 34 1 5.1243 -6.9264 -1.8970 35 1 1.5534 -10.0926 -0.0301 36 1 2.7576 -10.5281 1.2059 37 1 1.4628 -9.2714 2.9068 38 1 0.4672 -10.5406 2.1529 39 1 -0.7883 -8.4086 2.3161 40 1 -0.5114 -8.8560 0.6153 41 1 -0.0318 -6.4523 0.9974 42 1 1.1707 -6.8903 2.2340 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000177199213.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:45:15 Heat of formation + Delta-G solvation = -37.550067 kcal Electronic energy + Delta-G solvation = -19146.990826 eV Core-core repulsion = 16444.100246 eV Total energy + Delta-G solvation = -2702.890580 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.151 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.62732 -37.69600 -35.70737 -33.68678 -32.34086 -31.62660 -30.07479 -27.67502 -25.00384 -24.17045 -23.53291 -22.21827 -21.12838 -20.80269 -18.47824 -17.87320 -16.90083 -16.53573 -16.25178 -16.00131 -15.86331 -15.38622 -15.25963 -14.44804 -14.24467 -14.19168 -14.03990 -13.43613 -13.29782 -13.28216 -13.11403 -12.95525 -12.66894 -12.45499 -12.36036 -12.22521 -12.11178 -11.68764 -11.52538 -11.41015 -11.20781 -11.16983 -10.97395 -10.55684 -10.52090 -9.40681 -8.71331 -8.20638 -6.31442 0.78133 1.39814 1.40833 1.52058 1.52142 2.40156 2.68563 3.12797 3.54387 3.74743 3.84562 3.95259 4.05332 4.13407 4.18614 4.19237 4.31757 4.32640 4.41846 4.44548 4.50674 4.61828 4.71870 4.81933 4.82843 4.87466 4.97453 5.01350 5.06378 5.15201 5.16896 5.23552 5.24739 5.28501 5.47589 5.51251 5.72881 5.85027 5.97341 6.11873 6.26154 6.85232 7.37900 8.91245 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.027589 B = 0.004135 C = 0.003695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1014.654016 B = 6769.526363 C = 7575.440997 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.001 3.999 3 Si 0.963 3.037 4 H -0.272 1.272 5 H -0.281 1.281 6 H -0.264 1.264 7 C -0.542 4.542 8 H 0.058 0.942 9 C 0.027 3.973 10 C -0.090 4.090 11 C 0.068 3.932 12 N -0.552 5.552 13 C 0.050 3.950 14 C -0.063 4.063 15 S -0.304 6.304 16 C -0.022 4.022 17 H 0.089 0.911 18 C -0.094 4.094 19 C -0.109 4.109 20 C -0.115 4.115 21 C -0.118 4.118 22 C 0.095 3.905 23 H 0.043 0.957 24 H 0.263 0.737 25 H -0.010 1.010 26 H -0.007 1.007 27 H 0.051 0.949 28 H 0.051 0.949 29 H 0.022 0.978 30 H 0.083 0.917 31 H 0.089 0.911 32 H 0.041 0.959 33 H 0.088 0.912 34 H 0.121 0.879 35 H 0.069 0.931 36 H 0.078 0.922 37 H 0.068 0.932 38 H 0.087 0.913 39 H 0.078 0.922 40 H 0.064 0.936 41 H 0.063 0.937 42 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.015 -20.366 1.664 20.825 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.197 4.197 3 Si 0.788 3.212 4 H -0.198 1.198 5 H -0.207 1.207 6 H -0.188 1.188 7 C -0.580 4.580 8 H 0.076 0.924 9 C -0.010 4.010 10 C -0.128 4.128 11 C -0.059 4.059 12 N -0.277 5.277 13 C -0.079 4.079 14 C -0.212 4.212 15 S -0.074 6.074 16 C -0.151 4.151 17 H 0.107 0.893 18 C -0.134 4.134 19 C -0.148 4.148 20 C -0.153 4.153 21 C -0.157 4.157 22 C -0.015 4.015 23 H 0.061 0.939 24 H 0.072 0.928 25 H 0.008 0.992 26 H 0.011 0.989 27 H 0.070 0.930 28 H 0.070 0.930 29 H 0.040 0.960 30 H 0.101 0.899 31 H 0.107 0.893 32 H 0.059 0.941 33 H 0.107 0.893 34 H 0.139 0.861 35 H 0.088 0.912 36 H 0.097 0.903 37 H 0.086 0.914 38 H 0.105 0.895 39 H 0.097 0.903 40 H 0.083 0.917 41 H 0.081 0.919 42 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 4.598 -21.156 1.508 21.702 hybrid contribution -0.659 2.248 -0.301 2.362 sum 3.939 -18.908 1.208 19.352 Atomic orbital electron populations 1.70096 1.07762 1.27745 1.51731 1.25955 0.95746 1.03270 0.94716 0.85471 0.78700 0.78543 0.78495 1.19780 1.20692 1.18805 1.21675 0.93477 0.92392 1.50474 0.92352 1.18948 0.94355 0.92981 0.94755 1.21451 0.98006 0.92714 1.00624 1.22108 0.93645 0.89627 1.00537 1.61264 1.25509 1.03224 1.37709 1.22301 0.93858 1.01126 0.90617 1.23467 0.99441 0.92070 1.06196 1.86797 1.55175 1.14890 1.50575 1.23314 0.95528 0.98847 0.97420 0.89283 1.21380 0.98070 0.93574 1.00336 1.21528 0.95827 0.99765 0.97649 1.21545 0.98049 0.93629 1.02104 1.21805 0.96802 0.98869 0.98266 1.21832 0.93290 0.88232 0.98153 0.93944 0.92777 0.99209 0.98879 0.92995 0.93014 0.95980 0.89926 0.89327 0.94083 0.89289 0.86057 0.91240 0.90290 0.91370 0.89459 0.90308 0.91712 0.91875 0.91323 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.88 13.29 21.45 0.28 -56.59 16 2 C 0.00 0.05 5.46 84.65 0.46 0.51 16 3 Si 0.96 44.36 29.54 68.60 2.03 46.39 16 4 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 5 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 6 H -0.26 -11.63 7.11 99.48 0.71 -10.93 16 7 C -0.54 -31.04 9.11 25.60 0.23 -30.81 16 8 H 0.06 3.22 7.74 -2.91 -0.02 3.19 16 9 C 0.03 1.44 4.97 29.85 0.15 1.59 16 10 C -0.09 -3.72 5.06 30.59 0.15 -3.56 16 11 C 0.07 2.33 4.33 86.30 0.37 2.70 16 12 N -0.55 -16.07 4.32 -871.79 -3.77 -19.84 16 13 C 0.05 1.36 5.30 86.48 0.46 1.82 16 14 C -0.06 -1.48 6.69 72.07 0.48 -1.00 16 15 S -0.30 -7.27 21.72 -56.49 -1.23 -8.49 16 16 C -0.02 -0.49 2.67 30.69 0.08 -0.40 16 17 H 0.09 2.11 8.14 -2.38 -0.02 2.09 16 18 C -0.09 -1.62 5.16 30.58 0.16 -1.46 16 19 C -0.11 -1.56 5.93 30.59 0.18 -1.38 16 20 C -0.12 -1.93 5.93 30.58 0.18 -1.75 16 21 C -0.12 -2.67 4.27 30.59 0.13 -2.54 16 22 C 0.09 2.34 1.80 45.08 0.08 2.43 16 23 H 0.04 1.13 7.92 -2.38 -0.02 1.11 16 24 H 0.26 15.06 8.31 -92.71 -0.77 14.29 16 25 H -0.01 -0.60 8.14 -2.39 -0.02 -0.62 16 26 H -0.01 -0.41 8.14 -2.39 -0.02 -0.43 16 27 H 0.05 2.17 8.14 -2.39 -0.02 2.15 16 28 H 0.05 2.08 6.15 -2.39 -0.01 2.06 16 29 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 30 H 0.08 2.81 5.60 -2.39 -0.01 2.80 16 31 H 0.09 2.56 5.71 -2.39 -0.01 2.55 16 32 H 0.04 1.13 7.91 -2.39 -0.02 1.11 16 33 H 0.09 2.13 8.14 -2.39 -0.02 2.11 16 34 H 0.12 2.38 8.14 -2.39 -0.02 2.36 16 35 H 0.07 1.23 8.14 -2.38 -0.02 1.21 16 36 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 37 H 0.07 0.98 8.14 -2.38 -0.02 0.96 16 38 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 39 H 0.08 1.17 8.14 -2.38 -0.02 1.15 16 40 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 41 H 0.06 1.59 6.15 -2.39 -0.01 1.57 16 42 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 Total: -1.00 -62.79 326.34 1.40 -61.39 By element: Atomic # 1 Polarization: 10.05 SS G_CDS: 0.96 Total: 11.01 kcal Atomic # 6 Polarization: -36.98 SS G_CDS: 3.13 Total: -33.86 kcal Atomic # 7 Polarization: -72.95 SS G_CDS: -3.48 Total: -76.43 kcal Atomic # 14 Polarization: 44.36 SS G_CDS: 2.03 Total: 46.39 kcal Atomic # 16 Polarization: -7.27 SS G_CDS: -1.23 Total: -8.49 kcal Total: -62.79 1.40 -61.39 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000177199213.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.836 kcal (2) G-P(sol) polarization free energy of solvation -62.789 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.953 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.403 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.386 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.550 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds