Wall clock time and date at job start Mon Mar 30 2020 00:45:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86808 * 119.99942 * 2 1 4 4 H 1.48496 * 109.47119 * 240.00100 * 3 2 1 5 5 H 1.48500 * 109.46900 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.46983 * 119.99928 * 3 2 1 7 7 C 1.37876 * 120.00118 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99906 * 180.02562 * 7 2 1 9 9 C 1.50701 * 120.00108 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.47086 * 179.97438 * 9 7 2 11 11 C 1.53003 * 109.46773 * 179.97438 * 10 9 7 12 12 N 1.46906 * 109.46765 * 180.02562 * 11 10 9 13 13 C 1.46418 * 110.99571 * 295.89691 * 12 11 10 14 14 C 1.53277 * 109.77164 * 161.82431 * 13 12 11 15 15 S 1.81889 * 108.41292 * 62.16500 * 14 13 12 16 16 C 1.81772 * 102.00485 * 308.77901 * 15 14 13 17 17 H 1.09005 * 109.62565 * 170.92882 * 16 15 14 18 18 C 1.52952 * 109.51945 * 291.79454 * 16 15 14 19 19 C 1.53035 * 109.32338 * 179.75853 * 18 16 15 20 20 C 1.52961 * 109.61308 * 300.32170 * 19 18 16 21 21 C 1.53023 * 109.62869 * 59.48282 * 20 19 18 22 22 C 1.46616 * 110.99807 * 169.79256 * 12 11 10 23 23 H 1.09002 * 109.60053 * 77.31216 * 22 12 11 24 24 H 0.96996 * 120.00246 * 359.97438 * 1 2 3 25 25 H 1.09000 * 109.46860 * 59.99725 * 9 7 2 26 26 H 1.09001 * 109.46627 * 300.00173 * 9 7 2 27 27 H 1.09003 * 109.46762 * 60.00635 * 10 9 7 28 28 H 1.08992 * 109.46962 * 300.00094 * 10 9 7 29 29 H 1.08994 * 109.46893 * 60.00488 * 11 10 9 30 30 H 1.09000 * 109.47262 * 299.99623 * 11 10 9 31 31 H 1.09003 * 109.42282 * 41.72771 * 13 12 11 32 32 H 1.09003 * 109.42241 * 281.91726 * 13 12 11 33 33 H 1.09008 * 109.67523 * 302.43799 * 14 13 12 34 34 H 1.08997 * 109.67743 * 181.90147 * 14 13 12 35 35 H 1.08991 * 109.49891 * 299.71905 * 18 16 15 36 36 H 1.09004 * 109.49408 * 59.81207 * 18 16 15 37 37 H 1.09006 * 109.44956 * 180.27872 * 19 18 16 38 38 H 1.09004 * 109.42114 * 60.35133 * 19 18 16 39 39 H 1.08997 * 109.44570 * 299.43735 * 20 19 18 40 40 H 1.09005 * 109.42281 * 179.51197 * 20 19 18 41 41 H 1.08995 * 109.51179 * 179.86766 * 21 20 19 42 42 H 1.08999 * 109.50961 * 59.71064 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 6 2.2454 -3.6620 -0.0018 11 6 1.4803 -4.9871 -0.0012 12 7 2.4350 -6.1036 -0.0018 13 6 3.2288 -6.1145 -1.2321 14 6 4.4865 -6.9670 -1.0302 15 16 3.9718 -8.6753 -0.6760 16 6 2.7744 -8.4379 0.6708 17 1 2.2626 -9.3782 0.8756 18 6 3.5047 -7.9537 1.9245 19 6 2.4919 -7.7496 3.0534 20 6 1.4516 -6.7119 2.6285 21 6 0.7303 -7.1935 1.3678 22 6 1.7527 -7.3784 0.2414 23 1 1.2496 -7.7034 -0.6694 24 1 -0.4850 0.8400 0.0004 25 1 0.6240 -2.5567 -0.8903 26 1 0.6248 -2.5570 0.8897 27 1 2.8726 -3.6047 0.8878 28 1 2.8713 -3.6038 -0.8922 29 1 0.8528 -5.0447 -0.8905 30 1 0.8547 -5.0450 0.8895 31 1 3.5190 -5.0947 -1.4852 32 1 2.6337 -6.5330 -2.0438 33 1 5.0640 -6.5765 -0.1921 34 1 5.0930 -6.9466 -1.9356 35 1 4.2413 -8.6981 2.2267 36 1 4.0068 -7.0100 1.7113 37 1 3.0096 -7.3997 3.9466 38 1 1.9943 -8.6951 3.2693 39 1 1.9481 -5.7636 2.4225 40 1 0.7270 -6.5753 3.4313 41 1 -0.0121 -6.4539 1.0681 42 1 0.2369 -8.1439 1.5714 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000177199225.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:45:17 Heat of formation + Delta-G solvation = -16.989111 kcal Electronic energy + Delta-G solvation = -19579.086156 eV Core-core repulsion = 16877.087166 eV Total energy + Delta-G solvation = -2701.998990 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.151 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.83033 -36.00185 -33.79484 -32.19755 -31.16431 -30.42059 -28.71478 -25.98654 -23.52436 -22.78719 -22.36752 -21.53031 -19.94450 -18.76671 -16.92577 -16.34087 -15.53944 -15.37646 -15.08557 -14.92136 -14.40565 -14.08210 -13.55534 -13.34773 -12.95381 -12.65027 -12.46849 -12.43206 -12.08066 -11.87618 -11.71773 -11.44333 -11.29235 -11.10055 -10.84560 -10.67487 -10.57406 -10.53352 -10.22936 -10.17867 -9.56289 -9.45500 -9.33149 -9.07972 -8.35111 -8.13472 -7.68836 -6.00599 -4.02835 1.79789 2.49682 3.32730 3.37190 3.39623 3.89375 4.45746 4.55518 4.72823 4.91683 4.96242 5.13939 5.19601 5.22066 5.26308 5.35312 5.37091 5.40385 5.48909 5.63528 5.67762 5.79752 5.83577 5.89901 5.92682 5.98157 6.16105 6.18303 6.21074 6.28952 6.33593 6.53292 6.67037 6.75415 7.08475 7.31354 7.32272 7.66499 7.81127 7.99353 8.42478 9.04059 9.61301 11.10741 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.026470 B = 0.004521 C = 0.004192 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1057.550719 B = 6192.103604 C = 6677.971197 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.057 3.943 3 Si 0.891 3.109 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.519 4.519 8 H 0.054 0.946 9 C 0.023 3.977 10 C -0.105 4.105 11 C 0.051 3.949 12 N -0.540 5.540 13 C 0.050 3.950 14 C -0.068 4.068 15 S -0.291 6.291 16 C -0.030 4.030 17 H 0.104 0.896 18 C -0.103 4.103 19 C -0.110 4.110 20 C -0.119 4.119 21 C -0.117 4.117 22 C 0.091 3.909 23 H 0.050 0.950 24 H 0.261 0.739 25 H 0.013 0.987 26 H 0.015 0.985 27 H 0.055 0.945 28 H 0.046 0.954 29 H 0.028 0.972 30 H 0.084 0.916 31 H 0.097 0.903 32 H 0.042 0.958 33 H 0.091 0.909 34 H 0.102 0.898 35 H 0.061 0.939 36 H 0.081 0.919 37 H 0.062 0.938 38 H 0.054 0.946 39 H 0.082 0.918 40 H 0.057 0.943 41 H 0.074 0.926 42 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.673 -17.512 2.205 18.259 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.144 4.144 3 Si 0.719 3.281 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.558 4.558 8 H 0.072 0.928 9 C -0.015 4.015 10 C -0.142 4.142 11 C -0.075 4.075 12 N -0.265 5.265 13 C -0.079 4.079 14 C -0.217 4.217 15 S -0.061 6.061 16 C -0.159 4.159 17 H 0.122 0.878 18 C -0.142 4.142 19 C -0.150 4.150 20 C -0.156 4.156 21 C -0.156 4.156 22 C -0.019 4.019 23 H 0.067 0.933 24 H 0.070 0.930 25 H 0.031 0.969 26 H 0.034 0.966 27 H 0.073 0.927 28 H 0.065 0.935 29 H 0.046 0.954 30 H 0.102 0.898 31 H 0.115 0.885 32 H 0.060 0.940 33 H 0.110 0.890 34 H 0.120 0.880 35 H 0.080 0.920 36 H 0.100 0.900 37 H 0.081 0.919 38 H 0.073 0.927 39 H 0.101 0.899 40 H 0.076 0.924 41 H 0.093 0.907 42 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 5.214 -18.317 2.032 19.153 hybrid contribution -0.487 1.856 -0.209 1.930 sum 4.726 -16.461 1.822 17.223 Atomic orbital electron populations 1.69948 1.06053 1.26680 1.50876 1.25013 0.94823 0.99205 0.95345 0.86675 0.79603 0.83210 0.78620 1.20279 1.21300 1.20233 1.21196 0.92958 0.91049 1.50556 0.92801 1.19054 0.93993 0.91353 0.97054 1.21693 0.99145 0.92788 1.00619 1.22451 0.93941 0.90255 1.00865 1.61261 1.26678 1.02910 1.35659 1.22288 0.93427 1.01186 0.91014 1.23512 1.00267 0.92735 1.05185 1.86714 1.56460 1.14696 1.48228 1.23292 0.96194 1.01104 0.95287 0.87844 1.21701 0.97429 1.02279 0.92775 1.21485 0.96951 0.98869 0.97650 1.21528 0.97760 1.00151 0.96200 1.21816 0.97157 1.01535 0.95091 1.21809 0.92976 0.89566 0.97587 0.93262 0.92977 0.96892 0.96632 0.92656 0.93516 0.95395 0.89807 0.88526 0.93959 0.89037 0.87971 0.91989 0.90032 0.91920 0.92718 0.89910 0.92414 0.90733 0.91764 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.79 13.29 55.43 0.74 -26.05 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 3 Si 0.89 21.57 29.54 -169.99 -5.02 16.55 16 4 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 5 H -0.29 -6.89 7.11 56.52 0.40 -6.48 16 6 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 7 C -0.52 -14.56 9.11 -34.44 -0.31 -14.87 16 8 H 0.05 1.47 7.74 -52.49 -0.41 1.06 16 9 C 0.02 0.58 4.97 -27.88 -0.14 0.44 16 10 C -0.10 -2.07 5.08 -26.73 -0.14 -2.21 16 11 C 0.05 0.84 3.87 -3.82 -0.01 0.82 16 12 N -0.54 -7.48 2.80 -226.74 -0.64 -8.11 16 13 C 0.05 0.67 5.29 -3.94 -0.02 0.65 16 14 C -0.07 -0.81 6.33 37.30 0.24 -0.57 16 15 S -0.29 -3.61 21.79 -107.50 -2.34 -5.96 16 16 C -0.03 -0.34 2.74 -26.59 -0.07 -0.41 16 17 H 0.10 1.10 8.14 -51.93 -0.42 0.68 16 18 C -0.10 -1.14 4.98 -26.74 -0.13 -1.27 16 19 C -0.11 -1.14 5.92 -26.73 -0.16 -1.29 16 20 C -0.12 -1.38 5.38 -26.74 -0.14 -1.53 16 21 C -0.12 -1.34 4.87 -26.59 -0.13 -1.47 16 22 C 0.09 1.12 2.18 -67.57 -0.15 0.98 16 23 H 0.05 0.65 7.93 -51.93 -0.41 0.24 16 24 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 25 H 0.01 0.34 8.14 -51.93 -0.42 -0.08 16 26 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 27 H 0.05 1.12 8.14 -51.93 -0.42 0.69 16 28 H 0.05 0.91 6.18 -51.93 -0.32 0.59 16 29 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.08 1.36 4.64 -51.93 -0.24 1.12 16 31 H 0.10 1.37 5.77 -51.93 -0.30 1.07 16 32 H 0.04 0.57 7.93 -51.93 -0.41 0.16 16 33 H 0.09 1.11 7.56 -51.92 -0.39 0.71 16 34 H 0.10 1.07 8.14 -51.93 -0.42 0.64 16 35 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 36 H 0.08 1.05 6.63 -51.93 -0.34 0.71 16 37 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 39 H 0.08 1.15 6.47 -51.93 -0.34 0.82 16 40 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 41 H 0.07 0.92 6.20 -51.93 -0.32 0.60 16 42 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 LS Contribution 319.84 15.07 4.82 4.82 Total: -1.00 -28.79 319.84 -10.98 -39.78 By element: Atomic # 1 Polarization: 5.46 SS G_CDS: -7.27 Total: -1.82 kcal Atomic # 6 Polarization: -17.94 SS G_CDS: -1.27 Total: -19.21 kcal Atomic # 7 Polarization: -34.27 SS G_CDS: 0.10 Total: -34.17 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Atomic # 16 Polarization: -3.61 SS G_CDS: -2.34 Total: -5.96 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -28.79 -10.98 -39.78 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000177199225.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.788 kcal (2) G-P(sol) polarization free energy of solvation -28.793 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.005 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.984 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.777 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.989 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds