Wall clock time and date at job start Mon Mar 30 2020 00:45:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86808 * 119.99942 * 2 1 4 4 H 1.48496 * 109.47119 * 240.00100 * 3 2 1 5 5 H 1.48500 * 109.46900 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.46983 * 119.99928 * 3 2 1 7 7 C 1.37876 * 120.00118 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99906 * 180.02562 * 7 2 1 9 9 C 1.50701 * 120.00108 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.47086 * 179.97438 * 9 7 2 11 11 C 1.53003 * 109.46773 * 179.97438 * 10 9 7 12 12 N 1.46906 * 109.46765 * 180.02562 * 11 10 9 13 13 C 1.46418 * 110.99571 * 295.89691 * 12 11 10 14 14 C 1.53277 * 109.77164 * 161.82431 * 13 12 11 15 15 S 1.81889 * 108.41292 * 62.16500 * 14 13 12 16 16 C 1.81772 * 102.00485 * 308.77901 * 15 14 13 17 17 H 1.09005 * 109.62565 * 170.92882 * 16 15 14 18 18 C 1.52952 * 109.51945 * 291.79454 * 16 15 14 19 19 C 1.53035 * 109.32338 * 179.75853 * 18 16 15 20 20 C 1.52961 * 109.61308 * 300.32170 * 19 18 16 21 21 C 1.53023 * 109.62869 * 59.48282 * 20 19 18 22 22 C 1.46616 * 110.99807 * 169.79256 * 12 11 10 23 23 H 1.09002 * 109.60053 * 77.31216 * 22 12 11 24 24 H 0.96996 * 120.00246 * 359.97438 * 1 2 3 25 25 H 1.09000 * 109.46860 * 59.99725 * 9 7 2 26 26 H 1.09001 * 109.46627 * 300.00173 * 9 7 2 27 27 H 1.09003 * 109.46762 * 60.00635 * 10 9 7 28 28 H 1.08992 * 109.46962 * 300.00094 * 10 9 7 29 29 H 1.08994 * 109.46893 * 60.00488 * 11 10 9 30 30 H 1.09000 * 109.47262 * 299.99623 * 11 10 9 31 31 H 1.09003 * 109.42282 * 41.72771 * 13 12 11 32 32 H 1.09003 * 109.42241 * 281.91726 * 13 12 11 33 33 H 1.09008 * 109.67523 * 302.43799 * 14 13 12 34 34 H 1.08997 * 109.67743 * 181.90147 * 14 13 12 35 35 H 1.08991 * 109.49891 * 299.71905 * 18 16 15 36 36 H 1.09004 * 109.49408 * 59.81207 * 18 16 15 37 37 H 1.09006 * 109.44956 * 180.27872 * 19 18 16 38 38 H 1.09004 * 109.42114 * 60.35133 * 19 18 16 39 39 H 1.08997 * 109.44570 * 299.43735 * 20 19 18 40 40 H 1.09005 * 109.42281 * 179.51197 * 20 19 18 41 41 H 1.08995 * 109.51179 * 179.86766 * 21 20 19 42 42 H 1.08999 * 109.50961 * 59.71064 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 6 2.2454 -3.6620 -0.0018 11 6 1.4803 -4.9871 -0.0012 12 7 2.4350 -6.1036 -0.0018 13 6 3.2288 -6.1145 -1.2321 14 6 4.4865 -6.9670 -1.0302 15 16 3.9718 -8.6753 -0.6760 16 6 2.7744 -8.4379 0.6708 17 1 2.2626 -9.3782 0.8756 18 6 3.5047 -7.9537 1.9245 19 6 2.4919 -7.7496 3.0534 20 6 1.4516 -6.7119 2.6285 21 6 0.7303 -7.1935 1.3678 22 6 1.7527 -7.3784 0.2414 23 1 1.2496 -7.7034 -0.6694 24 1 -0.4850 0.8400 0.0004 25 1 0.6240 -2.5567 -0.8903 26 1 0.6248 -2.5570 0.8897 27 1 2.8726 -3.6047 0.8878 28 1 2.8713 -3.6038 -0.8922 29 1 0.8528 -5.0447 -0.8905 30 1 0.8547 -5.0450 0.8895 31 1 3.5190 -5.0947 -1.4852 32 1 2.6337 -6.5330 -2.0438 33 1 5.0640 -6.5765 -0.1921 34 1 5.0930 -6.9466 -1.9356 35 1 4.2413 -8.6981 2.2267 36 1 4.0068 -7.0100 1.7113 37 1 3.0096 -7.3997 3.9466 38 1 1.9943 -8.6951 3.2693 39 1 1.9481 -5.7636 2.4225 40 1 0.7270 -6.5753 3.4313 41 1 -0.0121 -6.4539 1.0681 42 1 0.2369 -8.1439 1.5714 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000177199225.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:45:17 Heat of formation + Delta-G solvation = -31.135207 kcal Electronic energy + Delta-G solvation = -19579.699577 eV Core-core repulsion = 16877.087166 eV Total energy + Delta-G solvation = -2702.612411 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.151 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.88939 -37.18306 -35.61168 -33.76831 -32.45219 -31.40996 -30.03232 -27.67606 -24.94837 -24.01552 -23.35881 -22.75492 -21.53819 -19.77885 -18.46801 -17.90605 -16.72179 -16.58281 -16.43997 -16.16096 -15.87437 -15.40923 -14.63744 -14.39197 -14.30931 -14.11070 -13.64551 -13.50889 -13.43236 -13.21788 -13.00137 -12.95833 -12.63312 -12.49605 -12.40619 -12.13070 -12.00329 -11.62506 -11.49020 -11.36759 -11.19801 -11.09497 -10.97325 -10.53609 -10.37739 -9.29798 -8.67645 -8.19507 -6.30236 0.84920 1.40118 1.42729 1.50650 1.53956 2.40833 2.76483 3.13850 3.59280 3.76580 3.92981 3.97056 4.11286 4.17545 4.26272 4.29147 4.33273 4.44643 4.49206 4.53195 4.57315 4.67121 4.74856 4.79718 4.86794 4.91689 4.98616 5.04234 5.15628 5.24624 5.26170 5.29339 5.37073 5.38153 5.52050 5.64712 5.75313 5.86893 6.03040 6.17136 6.27785 6.86462 7.38998 8.92067 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.026470 B = 0.004521 C = 0.004192 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1057.550719 B = 6192.103604 C = 6677.971197 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.001 3.999 3 Si 0.962 3.038 4 H -0.268 1.268 5 H -0.283 1.283 6 H -0.267 1.267 7 C -0.542 4.542 8 H 0.058 0.942 9 C 0.028 3.972 10 C -0.087 4.087 11 C 0.066 3.934 12 N -0.537 5.537 13 C 0.050 3.950 14 C -0.061 4.061 15 S -0.304 6.304 16 C -0.023 4.023 17 H 0.120 0.880 18 C -0.097 4.097 19 C -0.105 4.105 20 C -0.118 4.118 21 C -0.115 4.115 22 C 0.091 3.909 23 H 0.044 0.956 24 H 0.263 0.737 25 H -0.012 1.012 26 H -0.008 1.008 27 H 0.051 0.949 28 H 0.049 0.951 29 H 0.019 0.981 30 H 0.085 0.915 31 H 0.086 0.914 32 H 0.040 0.960 33 H 0.089 0.911 34 H 0.118 0.882 35 H 0.071 0.929 36 H 0.061 0.939 37 H 0.067 0.933 38 H 0.073 0.927 39 H 0.055 0.945 40 H 0.064 0.936 41 H 0.061 0.939 42 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.731 -18.455 2.677 19.509 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.196 4.196 3 Si 0.786 3.214 4 H -0.192 1.192 5 H -0.208 1.208 6 H -0.192 1.192 7 C -0.580 4.580 8 H 0.076 0.924 9 C -0.010 4.010 10 C -0.125 4.125 11 C -0.061 4.061 12 N -0.262 5.262 13 C -0.079 4.079 14 C -0.209 4.209 15 S -0.074 6.074 16 C -0.152 4.152 17 H 0.138 0.862 18 C -0.137 4.137 19 C -0.144 4.144 20 C -0.155 4.155 21 C -0.154 4.154 22 C -0.019 4.019 23 H 0.062 0.938 24 H 0.072 0.928 25 H 0.006 0.994 26 H 0.011 0.989 27 H 0.070 0.930 28 H 0.068 0.932 29 H 0.037 0.963 30 H 0.103 0.897 31 H 0.105 0.895 32 H 0.058 0.942 33 H 0.108 0.892 34 H 0.136 0.864 35 H 0.090 0.910 36 H 0.080 0.920 37 H 0.085 0.915 38 H 0.092 0.908 39 H 0.074 0.926 40 H 0.083 0.917 41 H 0.080 0.920 42 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 6.288 -19.279 2.502 20.432 hybrid contribution -0.844 2.118 -0.362 2.309 sum 5.444 -17.161 2.141 18.131 Atomic orbital electron populations 1.70082 1.07752 1.27771 1.51714 1.25942 0.95723 1.03220 0.94758 0.85550 0.78329 0.78314 0.79161 1.19247 1.20838 1.19212 1.21644 0.93441 0.92405 1.50480 0.92381 1.18942 0.94361 0.93027 0.94645 1.21412 0.97889 0.92689 1.00516 1.22139 0.93711 0.89697 1.00534 1.61216 1.26040 1.02975 1.36009 1.22295 0.94031 1.00967 0.90651 1.23460 0.99438 0.92084 1.05927 1.86776 1.56831 1.14913 1.48847 1.23320 0.95656 1.01276 0.94954 0.86238 1.21639 0.97679 1.01499 0.92852 1.21455 0.96380 0.99202 0.97362 1.21488 0.98162 0.99375 0.96493 1.21811 0.96639 1.02322 0.94604 1.21867 0.93460 0.88823 0.97771 0.93818 0.92811 0.99384 0.98929 0.92980 0.93219 0.96305 0.89677 0.89548 0.94191 0.89198 0.86399 0.91045 0.91989 0.91459 0.90848 0.92631 0.91713 0.92047 0.89495 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.76 13.29 21.45 0.28 -56.47 16 2 C 0.00 0.08 5.46 84.65 0.46 0.54 16 3 Si 0.96 44.22 29.54 68.60 2.03 46.24 16 4 H -0.27 -11.81 7.11 99.48 0.71 -11.11 16 5 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 6 H -0.27 -11.80 7.11 99.48 0.71 -11.10 16 7 C -0.54 -30.83 9.11 25.60 0.23 -30.59 16 8 H 0.06 3.18 7.74 -2.91 -0.02 3.15 16 9 C 0.03 1.46 4.97 29.85 0.15 1.61 16 10 C -0.09 -3.53 5.08 30.60 0.16 -3.37 16 11 C 0.07 2.20 3.87 86.30 0.33 2.53 16 12 N -0.54 -14.68 2.80 -871.26 -2.44 -17.12 16 13 C 0.05 1.30 5.29 86.49 0.46 1.76 16 14 C -0.06 -1.36 6.33 72.08 0.46 -0.90 16 15 S -0.30 -7.00 21.79 -56.49 -1.23 -8.23 16 16 C -0.02 -0.48 2.74 30.69 0.08 -0.40 16 17 H 0.12 2.17 8.14 -2.39 -0.02 2.15 16 18 C -0.10 -1.97 4.98 30.59 0.15 -1.82 16 19 C -0.10 -1.91 5.92 30.59 0.18 -1.73 16 20 C -0.12 -2.59 5.38 30.59 0.16 -2.42 16 21 C -0.11 -2.47 4.87 30.69 0.15 -2.32 16 22 C 0.09 2.13 2.18 45.16 0.10 2.23 16 23 H 0.04 1.10 7.93 -2.39 -0.02 1.08 16 24 H 0.26 15.08 8.31 -92.71 -0.77 14.30 16 25 H -0.01 -0.69 8.14 -2.39 -0.02 -0.71 16 26 H -0.01 -0.43 8.14 -2.39 -0.02 -0.45 16 27 H 0.05 2.13 8.14 -2.39 -0.02 2.11 16 28 H 0.05 1.97 6.18 -2.39 -0.01 1.95 16 29 H 0.02 0.65 8.14 -2.39 -0.02 0.64 16 30 H 0.09 2.82 4.64 -2.39 -0.01 2.81 16 31 H 0.09 2.43 5.77 -2.39 -0.01 2.42 16 32 H 0.04 1.06 7.93 -2.39 -0.02 1.05 16 33 H 0.09 2.07 7.56 -2.38 -0.02 2.05 16 34 H 0.12 2.26 8.14 -2.39 -0.02 2.24 16 35 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 36 H 0.06 1.52 6.63 -2.39 -0.02 1.50 16 37 H 0.07 1.19 8.14 -2.38 -0.02 1.17 16 38 H 0.07 1.10 8.14 -2.38 -0.02 1.08 16 39 H 0.05 1.53 6.47 -2.39 -0.02 1.52 16 40 H 0.06 1.33 8.14 -2.38 -0.02 1.31 16 41 H 0.06 1.49 6.20 -2.39 -0.01 1.48 16 42 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 Total: -1.00 -61.75 319.84 2.69 -59.06 By element: Atomic # 1 Polarization: 10.45 SS G_CDS: 0.97 Total: 11.42 kcal Atomic # 6 Polarization: -37.97 SS G_CDS: 3.08 Total: -34.89 kcal Atomic # 7 Polarization: -71.44 SS G_CDS: -2.16 Total: -73.59 kcal Atomic # 14 Polarization: 44.22 SS G_CDS: 2.03 Total: 46.24 kcal Atomic # 16 Polarization: -7.00 SS G_CDS: -1.23 Total: -8.23 kcal Total: -61.75 2.69 -59.06 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000177199225.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.923 kcal (2) G-P(sol) polarization free energy of solvation -61.747 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.825 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.689 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.058 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.135 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds