Wall clock time and date at job start Mon Mar 30 2020 00:45:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86801 * 119.99837 * 2 1 4 4 H 1.48498 * 109.46806 * 240.00069 * 3 2 1 5 5 H 1.48496 * 109.47037 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.46938 * 120.00424 * 3 2 1 7 7 C 1.37877 * 119.99951 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99860 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00248 * 359.97438 * 7 2 1 10 10 C 1.52994 * 109.47581 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.47646 * 179.97438 * 10 9 7 12 12 N 1.46893 * 109.47380 * 184.97100 * 11 10 9 13 13 C 1.46203 * 111.30359 * 297.81726 * 12 11 10 14 14 C 1.53278 * 110.19052 * 197.80225 * 13 12 11 15 15 S 1.81894 * 108.40886 * 298.04009 * 14 13 12 16 16 C 1.81766 * 102.01128 * 51.22663 * 15 14 13 17 17 H 1.08999 * 110.08233 * 188.80495 * 16 15 14 18 18 C 1.52950 * 109.51902 * 68.20707 * 16 15 14 19 19 C 1.53048 * 109.34070 * 180.24339 * 18 16 15 20 20 C 1.52956 * 109.60291 * 59.67705 * 19 18 16 21 21 C 1.53011 * 109.63846 * 300.51126 * 20 19 18 22 22 C 1.46615 * 111.00153 * 64.39505 * 12 11 10 23 23 H 1.08996 * 109.60115 * 283.18265 * 22 12 11 24 24 H 0.97001 * 120.00428 * 359.97438 * 1 2 3 25 25 H 1.08999 * 109.47035 * 59.99691 * 9 7 2 26 26 H 1.09005 * 109.47188 * 300.00333 * 9 7 2 27 27 H 1.09009 * 109.46968 * 59.99823 * 10 9 7 28 28 H 1.09005 * 109.47152 * 300.00380 * 10 9 7 29 29 H 1.09007 * 109.46454 * 64.97462 * 11 10 9 30 30 H 1.08995 * 109.47018 * 304.97427 * 11 10 9 31 31 H 1.08998 * 109.04352 * 77.68941 * 13 12 11 32 32 H 1.08999 * 109.32714 * 318.09356 * 13 12 11 33 33 H 1.08999 * 109.67969 * 178.31077 * 14 13 12 34 34 H 1.09004 * 109.70810 * 57.78762 * 14 13 12 35 35 H 1.08998 * 109.49431 * 60.27824 * 18 16 15 36 36 H 1.08994 * 109.49861 * 300.21426 * 18 16 15 37 37 H 1.08995 * 109.44873 * 179.71689 * 19 18 16 38 38 H 1.09001 * 109.44978 * 299.66516 * 19 18 16 39 39 H 1.08999 * 109.44465 * 60.57039 * 20 19 18 40 40 H 1.09006 * 109.44000 * 180.49787 * 20 19 18 41 41 H 1.08998 * 109.51634 * 180.12351 * 21 20 19 42 42 H 1.08999 * 109.51636 * 300.28272 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6964 -1.2125 5 1 1.2841 2.7464 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 6 2.2452 -3.6621 -0.0018 11 6 1.4803 -4.9871 -0.0012 12 7 2.4305 -6.1011 0.1176 13 6 3.3456 -6.1424 -1.0219 14 6 4.0133 -7.5190 -1.1145 15 16 4.9857 -7.7887 0.3989 16 6 3.7702 -7.4226 1.6998 17 1 4.2606 -7.3935 2.6728 18 6 2.6851 -8.5006 1.7035 19 6 1.6609 -8.1850 2.7960 20 6 1.0296 -6.8178 2.5282 21 6 2.1182 -5.7426 2.5144 22 6 3.1281 -6.0615 1.4065 23 1 3.8988 -5.2912 1.3816 24 1 -0.4851 0.8400 0.0004 25 1 0.6241 -2.5567 -0.8903 26 1 0.6247 -2.5571 0.8897 27 1 2.8726 -3.6047 0.8878 28 1 2.8713 -3.6039 -0.8923 29 1 0.9211 -5.0842 -0.9319 30 1 0.7895 -5.0074 0.8416 31 1 4.1103 -5.3767 -0.8918 32 1 2.7893 -5.9470 -1.9386 33 1 4.6705 -7.5505 -1.9835 34 1 3.2503 -8.2924 -1.2032 35 1 3.1384 -9.4722 1.8994 36 1 2.1883 -8.5199 0.7336 37 1 0.8840 -8.9495 2.7969 38 1 2.1576 -8.1712 3.7662 39 1 0.5238 -6.8345 1.5629 40 1 0.3071 -6.5919 3.3126 41 1 1.6660 -4.7690 2.3257 42 1 2.6275 -5.7277 3.4780 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000177199237.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:45:19 Heat of formation + Delta-G solvation = -33.906941 kcal Electronic energy + Delta-G solvation = -19719.558209 eV Core-core repulsion = 17016.825607 eV Total energy + Delta-G solvation = -2702.732602 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.151 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.02987 -37.18234 -35.60898 -33.85063 -32.12282 -31.43855 -30.08055 -27.63669 -24.99013 -23.94952 -23.36570 -23.09916 -21.54100 -19.60218 -18.50582 -17.82492 -16.98110 -16.69365 -16.39313 -16.15798 -15.71990 -15.07063 -14.69610 -14.47565 -14.25669 -14.18443 -13.63579 -13.55552 -13.34586 -13.21472 -13.08008 -12.89497 -12.61835 -12.55846 -12.40185 -12.24681 -12.00224 -11.61781 -11.41700 -11.39755 -11.34394 -11.18831 -11.06881 -10.57178 -10.36639 -9.23379 -8.66691 -8.21798 -6.33547 0.84866 1.36869 1.39049 1.47298 1.55663 2.38029 2.80468 3.10359 3.61279 3.76959 3.95287 3.98697 4.15178 4.20327 4.25041 4.30742 4.36604 4.40713 4.46963 4.50607 4.60541 4.64277 4.74075 4.79947 4.88710 4.95456 4.96460 5.04283 5.16317 5.21749 5.26893 5.30431 5.36681 5.38617 5.49290 5.62782 5.69287 5.82721 6.02950 6.15739 6.23986 6.82500 7.35670 8.88639 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.025994 B = 0.004775 C = 0.004396 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1076.898583 B = 5863.045953 C = 6367.429756 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.004 3.996 3 Si 0.959 3.041 4 H -0.269 1.269 5 H -0.280 1.280 6 H -0.269 1.269 7 C -0.546 4.546 8 H 0.051 0.949 9 C 0.032 3.968 10 C -0.124 4.124 11 C 0.065 3.935 12 N -0.530 5.530 13 C 0.054 3.946 14 C -0.058 4.058 15 S -0.311 6.311 16 C -0.024 4.024 17 H 0.112 0.888 18 C -0.094 4.094 19 C -0.105 4.105 20 C -0.112 4.112 21 C -0.119 4.119 22 C 0.094 3.906 23 H 0.031 0.969 24 H 0.264 0.736 25 H -0.008 1.008 26 H -0.006 1.006 27 H 0.042 0.958 28 H 0.042 0.958 29 H 0.072 0.928 30 H 0.083 0.917 31 H 0.031 0.969 32 H 0.091 0.909 33 H 0.119 0.881 34 H 0.099 0.901 35 H 0.072 0.928 36 H 0.069 0.931 37 H 0.075 0.925 38 H 0.066 0.934 39 H 0.065 0.935 40 H 0.063 0.937 41 H 0.055 0.945 42 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.236 -18.472 2.883 19.415 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.194 4.194 3 Si 0.784 3.216 4 H -0.194 1.194 5 H -0.205 1.205 6 H -0.194 1.194 7 C -0.584 4.584 8 H 0.070 0.930 9 C -0.006 4.006 10 C -0.163 4.163 11 C -0.062 4.062 12 N -0.254 5.254 13 C -0.076 4.076 14 C -0.206 4.206 15 S -0.081 6.081 16 C -0.153 4.153 17 H 0.130 0.870 18 C -0.134 4.134 19 C -0.145 4.145 20 C -0.149 4.149 21 C -0.158 4.158 22 C -0.016 4.016 23 H 0.049 0.951 24 H 0.073 0.927 25 H 0.011 0.989 26 H 0.012 0.988 27 H 0.061 0.939 28 H 0.061 0.939 29 H 0.090 0.910 30 H 0.101 0.899 31 H 0.049 0.951 32 H 0.109 0.891 33 H 0.137 0.863 34 H 0.117 0.883 35 H 0.091 0.909 36 H 0.088 0.912 37 H 0.094 0.906 38 H 0.085 0.915 39 H 0.083 0.917 40 H 0.082 0.918 41 H 0.074 0.926 42 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 5.980 -19.137 2.930 20.262 hybrid contribution -0.420 2.475 -0.222 2.520 sum 5.561 -16.662 2.709 17.773 Atomic orbital electron populations 1.70069 1.07608 1.27830 1.51448 1.25906 0.95741 1.03071 0.94681 0.85588 0.78413 0.78536 0.79063 1.19375 1.20514 1.19383 1.21635 0.93160 0.92745 1.50837 0.93046 1.18879 0.94167 0.92672 0.94854 1.21994 0.98675 0.95909 0.99694 1.22246 0.94588 0.86690 1.02714 1.61249 1.18881 1.43941 1.01311 1.22162 0.95131 0.95493 0.94793 1.23487 1.01199 0.99567 0.96351 1.86844 1.24846 1.91413 1.05011 1.23305 0.96568 0.97401 0.98050 0.87029 1.21646 0.94923 0.96241 1.00547 1.21474 0.98145 0.96607 0.98249 1.21463 0.97021 0.94371 1.02086 1.21825 0.97030 0.99454 0.97531 1.21719 0.95076 0.94751 0.90011 0.95103 0.92701 0.98924 0.98810 0.93887 0.93930 0.90999 0.89867 0.95088 0.89116 0.86303 0.88292 0.90908 0.91238 0.90646 0.91501 0.91667 0.91807 0.92625 0.90651 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.44 13.29 21.45 0.28 -56.15 16 2 C 0.00 0.24 5.46 84.65 0.46 0.70 16 3 Si 0.96 44.56 29.54 68.60 2.03 46.59 16 4 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 5 H -0.28 -12.61 7.11 99.48 0.71 -11.91 16 6 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 7 C -0.55 -31.40 9.11 25.60 0.23 -31.16 16 8 H 0.05 2.89 7.74 -2.91 -0.02 2.87 16 9 C 0.03 1.67 4.97 29.85 0.15 1.82 16 10 C -0.12 -5.02 4.23 30.59 0.13 -4.89 16 11 C 0.06 2.10 4.31 86.30 0.37 2.48 16 12 N -0.53 -14.25 3.01 -871.85 -2.62 -16.87 16 13 C 0.05 1.37 4.56 86.53 0.39 1.76 16 14 C -0.06 -1.21 6.34 72.08 0.46 -0.76 16 15 S -0.31 -7.49 21.79 -56.49 -1.23 -8.72 16 16 C -0.02 -0.55 2.74 30.69 0.08 -0.46 16 17 H 0.11 2.37 8.14 -2.39 -0.02 2.35 16 18 C -0.09 -1.81 4.98 30.59 0.15 -1.66 16 19 C -0.11 -1.85 5.92 30.60 0.18 -1.67 16 20 C -0.11 -2.43 5.38 30.58 0.16 -2.26 16 21 C -0.12 -3.04 4.78 30.69 0.15 -2.89 16 22 C 0.09 2.50 1.44 45.17 0.06 2.57 16 23 H 0.03 0.98 7.04 -2.39 -0.02 0.96 16 24 H 0.26 15.09 8.31 -92.71 -0.77 14.31 16 25 H -0.01 -0.43 8.14 -2.39 -0.02 -0.45 16 26 H -0.01 -0.36 8.14 -2.38 -0.02 -0.38 16 27 H 0.04 1.78 6.21 -2.38 -0.01 1.77 16 28 H 0.04 1.74 7.16 -2.38 -0.02 1.72 16 29 H 0.07 2.31 8.03 -2.38 -0.02 2.29 16 30 H 0.08 2.73 4.85 -2.39 -0.01 2.72 16 31 H 0.03 0.91 7.27 -2.39 -0.02 0.90 16 32 H 0.09 2.20 7.88 -2.39 -0.02 2.18 16 33 H 0.12 2.12 8.14 -2.39 -0.02 2.10 16 34 H 0.10 1.92 7.56 -2.39 -0.02 1.91 16 35 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 36 H 0.07 1.49 6.66 -2.39 -0.02 1.47 16 37 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 38 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 39 H 0.06 1.57 6.43 -2.39 -0.02 1.56 16 40 H 0.06 1.30 8.14 -2.38 -0.02 1.28 16 41 H 0.06 1.73 5.62 -2.39 -0.01 1.71 16 42 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 Total: -1.00 -62.20 317.20 2.42 -59.77 By element: Atomic # 1 Polarization: 10.84 SS G_CDS: 0.97 Total: 11.81 kcal Atomic # 6 Polarization: -39.42 SS G_CDS: 2.99 Total: -36.43 kcal Atomic # 7 Polarization: -70.69 SS G_CDS: -2.34 Total: -73.02 kcal Atomic # 14 Polarization: 44.56 SS G_CDS: 2.03 Total: 46.59 kcal Atomic # 16 Polarization: -7.49 SS G_CDS: -1.23 Total: -8.72 kcal Total: -62.20 2.42 -59.77 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000177199237.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.868 kcal (2) G-P(sol) polarization free energy of solvation -62.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.329 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.422 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.775 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds