Wall clock time and date at job start Mon Mar 30 2020 00:45:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31629 * 1 3 3 Si 1.86808 * 119.99592 * 2 1 4 4 H 1.48500 * 109.46936 * 179.97438 * 3 2 1 5 5 H 1.48493 * 109.47196 * 299.99325 * 3 2 1 6 6 H 1.48496 * 109.46962 * 59.99922 * 3 2 1 7 7 C 1.38796 * 120.00517 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00486 * 180.02562 * 7 2 1 9 9 S 1.76203 * 119.99706 * 0.02562 * 7 2 1 10 10 C 1.81005 * 99.99942 * 179.97438 * 9 7 2 11 11 C 1.53002 * 109.46698 * 179.97438 * 10 9 7 12 12 C 1.53002 * 109.46430 * 179.97438 * 11 10 9 13 13 N 1.46903 * 109.46762 * 179.97438 * 12 11 10 14 14 C 1.48824 * 110.99913 * 190.00313 * 13 12 11 15 15 C 1.52556 * 105.65955 * 241.16096 * 14 13 12 16 16 H 1.09003 * 110.76161 * 87.13510 * 15 14 13 17 17 C 1.51525 * 116.99652 * 214.26294 * 15 14 13 18 18 C 1.53809 * 107.17983 * 178.27053 * 17 15 14 19 19 C 1.52532 * 111.60099 * 302.63928 * 18 17 15 20 20 C 1.53778 * 111.64673 * 54.10366 * 19 18 17 21 21 C 1.51711 * 107.09603 * 302.32001 * 20 19 18 22 22 H 1.09004 * 110.91583 * 304.14160 * 21 20 19 23 23 C 1.50402 * 111.34734 * 69.12152 * 13 12 11 24 24 H 0.97001 * 120.00394 * 0.02562 * 1 2 3 25 25 H 1.09003 * 109.46903 * 59.99773 * 10 9 7 26 26 H 1.08995 * 109.46769 * 299.99363 * 10 9 7 27 27 H 1.08998 * 109.47195 * 59.99932 * 11 10 9 28 28 H 1.08995 * 109.47072 * 299.99278 * 11 10 9 29 29 H 1.08998 * 109.47334 * 60.00204 * 12 11 10 30 30 H 1.08994 * 109.47479 * 299.99796 * 12 11 10 31 31 H 1.08994 * 110.21403 * 122.11902 * 14 13 12 32 32 H 1.09000 * 110.21202 * 0.20685 * 14 13 12 33 33 H 1.09002 * 109.92763 * 58.82961 * 17 15 14 34 34 H 1.08996 * 109.92666 * 297.71009 * 17 15 14 35 35 H 1.09004 * 109.05471 * 63.18437 * 18 17 15 36 36 H 1.08996 * 109.05229 * 182.08851 * 18 17 15 37 37 H 1.08993 * 109.04815 * 174.66415 * 19 18 17 38 38 H 1.09001 * 109.04382 * 293.55038 * 19 18 17 39 39 H 1.09005 * 109.92827 * 61.71901 * 20 19 18 40 40 H 1.09004 * 109.92939 * 182.84216 * 20 19 18 41 41 H 1.09000 * 110.42057 * 28.68078 * 23 13 12 42 42 H 1.09003 * 111.29974 * 265.26110 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6179 0.0000 4 1 3.7102 1.3466 0.0006 5 1 1.8916 2.3964 -1.2125 6 1 1.8914 2.3965 1.2125 7 6 2.0104 -1.2019 0.0005 8 1 3.0903 -1.2019 0.0010 9 16 1.1294 -2.7279 0.0005 10 6 2.5161 -3.8914 0.0005 11 6 1.9795 -5.3242 0.0012 12 6 3.1516 -6.3076 0.0005 13 7 2.6365 -7.6833 0.0018 14 6 3.7312 -8.6624 0.2425 15 6 3.7759 -9.5442 -1.0016 16 1 4.4149 -9.1018 -1.7659 17 6 4.1420 -11.0006 -0.7995 18 6 4.0765 -11.6809 -2.1775 19 6 2.6990 -11.5277 -2.8145 20 6 2.2675 -10.0534 -2.8851 21 6 2.2875 -9.5144 -1.4671 22 1 1.6583 -10.1176 -0.8126 23 6 1.9757 -8.0217 -1.3062 24 1 -0.4851 0.8400 -0.0004 25 1 3.1247 -3.7312 0.8905 26 1 3.1245 -3.7313 -0.8895 27 1 1.3706 -5.4846 -0.8885 28 1 1.3713 -5.4840 0.8914 29 1 3.7609 -6.1473 0.8901 30 1 3.7596 -6.1477 -0.8898 31 1 3.5103 -9.2652 1.1234 32 1 4.6805 -8.1422 0.3697 33 1 3.4323 -11.4711 -0.1189 34 1 5.1511 -11.0774 -0.3950 35 1 4.8232 -11.2314 -2.8321 36 1 4.2990 -12.7416 -2.0616 37 1 2.7259 -11.9391 -3.8234 38 1 1.9704 -12.0836 -2.2243 39 1 2.9652 -9.4914 -3.5061 40 1 1.2612 -9.9801 -3.2976 41 1 2.4209 -7.4457 -2.1175 42 1 0.8993 -7.8560 -1.2606 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000177563097.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:45:28 Heat of formation + Delta-G solvation = -29.763437 kcal Electronic energy + Delta-G solvation = -18273.125829 eV Core-core repulsion = 15570.572903 eV Total energy + Delta-G solvation = -2702.552927 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.151 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.23757 -36.60477 -33.40623 -32.39807 -31.81843 -30.03211 -27.47153 -25.93401 -25.27712 -22.71420 -21.51084 -21.04858 -20.43463 -20.11136 -17.42244 -15.69764 -15.43561 -15.21613 -15.05031 -14.78184 -14.43047 -14.35679 -13.82680 -13.42470 -13.18403 -12.97941 -12.58786 -12.35905 -12.17288 -11.93848 -11.71742 -11.45192 -11.23879 -11.09935 -11.05997 -11.00433 -10.75794 -10.71602 -10.56864 -10.42782 -10.28868 -9.99246 -9.47155 -9.03900 -8.26826 -8.24776 -6.48840 -6.19989 -3.89673 3.22616 3.24095 3.31658 3.57943 3.94901 4.16011 4.25586 4.39923 4.48267 4.79137 4.90940 5.05583 5.09949 5.15880 5.21867 5.25416 5.27909 5.35276 5.38966 5.42293 5.52093 5.57842 5.63460 5.69746 5.77409 5.79767 5.83560 5.85158 5.93120 5.94540 5.98487 6.03212 6.10953 6.17377 6.29572 6.39991 6.65082 6.81692 6.93519 7.14882 7.63577 8.39800 9.26322 10.88272 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.048945 B = 0.002888 C = 0.002836 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 571.931255 B = 9693.737183 C = 9872.130256 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.870 5.870 2 C 0.070 3.930 3 Si 0.918 3.082 4 H -0.272 1.272 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.515 4.515 8 H 0.072 0.928 9 S -0.133 6.133 10 C -0.112 4.112 11 C -0.091 4.091 12 C 0.056 3.944 13 N -0.530 5.530 14 C 0.050 3.950 15 C -0.116 4.116 16 H 0.071 0.929 17 C -0.104 4.104 18 C -0.118 4.118 19 C -0.118 4.118 20 C -0.108 4.108 21 C -0.100 4.100 22 H 0.084 0.916 23 C 0.048 3.952 24 H 0.266 0.734 25 H 0.059 0.941 26 H 0.057 0.943 27 H 0.063 0.937 28 H 0.073 0.927 29 H 0.071 0.929 30 H 0.031 0.969 31 H 0.077 0.923 32 H 0.056 0.944 33 H 0.066 0.934 34 H 0.062 0.938 35 H 0.058 0.942 36 H 0.060 0.940 37 H 0.059 0.941 38 H 0.060 0.940 39 H 0.063 0.937 40 H 0.066 0.934 41 H 0.050 0.950 42 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.506 -22.891 -3.843 24.394 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.506 5.506 2 C -0.139 4.139 3 Si 0.745 3.255 4 H -0.196 1.196 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.663 4.663 8 H 0.090 0.910 9 S 0.095 5.905 10 C -0.262 4.262 11 C -0.130 4.130 12 C -0.074 4.074 13 N -0.254 5.254 14 C -0.078 4.078 15 C -0.136 4.136 16 H 0.090 0.910 17 C -0.142 4.142 18 C -0.156 4.156 19 C -0.155 4.155 20 C -0.146 4.146 21 C -0.119 4.119 22 H 0.103 0.897 23 C -0.079 4.079 24 H 0.076 0.924 25 H 0.078 0.922 26 H 0.075 0.925 27 H 0.082 0.918 28 H 0.092 0.908 29 H 0.090 0.910 30 H 0.049 0.951 31 H 0.095 0.905 32 H 0.074 0.926 33 H 0.085 0.915 34 H 0.080 0.920 35 H 0.077 0.923 36 H 0.078 0.922 37 H 0.078 0.922 38 H 0.079 0.921 39 H 0.081 0.919 40 H 0.084 0.916 41 H 0.068 0.932 42 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 5.864 -22.976 -3.430 23.959 hybrid contribution 2.525 1.448 -0.674 2.988 sum 8.390 -21.528 -4.104 23.466 Atomic orbital electron populations 1.70036 1.05907 1.27159 1.47458 1.25019 0.95080 0.99078 0.94692 0.86118 0.79646 0.81918 0.77863 1.19636 1.20596 1.20571 1.22736 0.94535 0.90836 1.58186 0.90973 1.84637 1.09667 0.99380 1.96822 1.23239 1.02768 0.97537 1.02607 1.21223 0.96971 0.91736 1.03079 1.22361 0.96991 0.87658 1.00353 1.64573 1.26887 1.02306 1.31667 1.22601 0.93579 0.94011 0.97597 1.22233 0.97213 0.95869 0.98245 0.91042 1.21309 1.01401 0.94409 0.97065 1.21540 0.97344 1.00242 0.96441 1.21523 0.96941 0.96547 1.00502 1.21382 1.01487 0.95707 0.96015 1.22197 0.96283 0.96344 0.97105 0.89731 1.23123 1.00287 0.94289 0.90157 0.92394 0.92199 0.92465 0.91830 0.90841 0.91034 0.95087 0.90502 0.92578 0.91544 0.91961 0.92348 0.92171 0.92199 0.92134 0.91863 0.91571 0.93190 0.89825 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.37 13.22 55.49 0.73 -25.63 16 2 C 0.07 2.02 5.49 -17.43 -0.10 1.93 16 3 Si 0.92 21.82 29.55 -169.99 -5.02 16.80 16 4 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 5 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 6 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 7 C -0.51 -15.04 9.50 30.94 0.29 -14.75 16 8 H 0.07 2.05 7.80 -52.49 -0.41 1.64 16 9 S -0.13 -3.58 21.44 -107.50 -2.30 -5.88 16 10 C -0.11 -2.35 5.67 37.16 0.21 -2.14 16 11 C -0.09 -1.58 5.27 -26.73 -0.14 -1.72 16 12 C 0.06 0.80 4.64 -3.82 -0.02 0.79 16 13 N -0.53 -6.88 5.22 -229.92 -1.20 -8.08 16 14 C 0.05 0.53 6.57 -2.98 -0.02 0.51 16 15 C -0.12 -1.07 2.35 -90.00 -0.21 -1.28 16 16 H 0.07 0.70 7.93 -51.93 -0.41 0.29 16 17 C -0.10 -0.79 5.67 -27.06 -0.15 -0.94 16 18 C -0.12 -0.82 5.84 -26.55 -0.16 -0.98 16 19 C -0.12 -0.84 5.84 -26.57 -0.16 -0.99 16 20 C -0.11 -0.89 5.68 -26.98 -0.15 -1.04 16 21 C -0.10 -0.96 2.49 -89.51 -0.22 -1.18 16 22 H 0.08 0.84 8.05 -51.93 -0.42 0.42 16 23 C 0.05 0.57 5.54 -1.68 -0.01 0.56 16 24 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 25 H 0.06 1.24 8.14 -51.91 -0.42 0.82 16 26 H 0.06 1.18 8.14 -51.92 -0.42 0.76 16 27 H 0.06 1.11 7.51 -51.93 -0.39 0.72 16 28 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 29 H 0.07 1.00 8.01 -51.93 -0.42 0.59 16 30 H 0.03 0.44 7.90 -51.93 -0.41 0.03 16 31 H 0.08 0.80 8.07 -51.93 -0.42 0.38 16 32 H 0.06 0.59 7.57 -51.93 -0.39 0.20 16 33 H 0.07 0.51 8.05 -51.93 -0.42 0.09 16 34 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 36 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 37 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 38 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 39 H 0.06 0.54 7.99 -51.93 -0.41 0.13 16 40 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 41 H 0.05 0.61 7.72 -51.93 -0.40 0.21 16 42 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 LS Contribution 337.65 15.07 5.09 5.09 Total: -1.00 -30.75 337.65 -11.40 -42.15 By element: Atomic # 1 Polarization: 4.66 SS G_CDS: -7.86 Total: -3.21 kcal Atomic # 6 Polarization: -20.40 SS G_CDS: -0.83 Total: -21.23 kcal Atomic # 7 Polarization: -33.25 SS G_CDS: -0.47 Total: -33.72 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.80 kcal Atomic # 16 Polarization: -3.58 SS G_CDS: -2.30 Total: -5.88 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -30.75 -11.40 -42.15 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000177563097.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.390 kcal (2) G-P(sol) polarization free energy of solvation -30.753 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.363 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.400 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.153 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.763 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds