Wall clock time and date at job start Mon Mar 30 2020 00:52:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53000 * 109.55751 * 2 1 4 4 C 1.50604 * 109.55965 * 239.78097 * 2 1 3 5 5 C 1.54757 * 116.45948 * 329.13618 * 4 2 1 6 6 N 1.47214 * 117.55552 * 313.53054 * 5 4 2 7 7 C 1.46901 * 111.00223 * 193.28838 * 6 5 4 8 8 C 1.53004 * 109.46721 * 51.14598 * 7 6 5 9 9 C 1.50697 * 115.54733 * 284.47341 * 8 7 6 10 10 H 1.07997 * 119.99716 * 114.54326 * 9 8 7 11 11 C 1.37875 * 120.00025 * 294.53159 * 9 8 7 12 12 N 1.31520 * 119.99936 * 164.78020 * 11 9 8 13 13 Si 1.86797 * 120.00259 * 344.78656 * 11 9 8 14 14 H 1.48499 * 109.47448 * 85.33729 * 13 11 9 15 15 H 1.48499 * 109.47310 * 205.34109 * 13 11 9 16 16 H 1.48505 * 109.46937 * 325.33797 * 13 11 9 17 17 C 1.53002 * 117.49507 * 138.80485 * 8 7 6 18 18 C 1.53003 * 117.49897 * 70.14804 * 8 7 6 19 19 C 1.43450 * 111.40444 * 317.54369 * 6 5 4 20 20 C 1.52276 * 104.90284 * 100.56859 * 19 6 5 21 21 S 1.74917 * 114.45856 * 267.14060 * 20 19 6 22 22 H 1.08991 * 109.47525 * 60.00419 * 1 2 3 23 23 H 1.09002 * 109.47178 * 300.00396 * 1 2 3 24 24 H 1.09002 * 109.47010 * 180.02562 * 1 2 3 25 25 H 1.08995 * 109.47805 * 59.99508 * 3 2 1 26 26 H 1.08997 * 109.47078 * 180.02562 * 3 2 1 27 27 H 1.09000 * 109.46668 * 299.99853 * 3 2 1 28 28 H 1.09002 * 108.04227 * 91.09469 * 4 2 1 29 29 H 1.09003 * 108.03875 * 207.53672 * 4 2 1 30 30 H 1.09000 * 107.84350 * 191.45396 * 5 4 2 31 31 H 1.09005 * 107.76368 * 75.54138 * 5 4 2 32 32 H 1.09000 * 109.46897 * 171.14067 * 7 6 5 33 33 H 1.08992 * 109.47341 * 291.14289 * 7 6 5 34 34 H 0.96993 * 120.00332 * 180.02562 * 12 11 9 35 35 H 1.08991 * 117.50284 * 359.97438 * 17 8 7 36 36 H 1.09005 * 117.49679 * 145.02143 * 17 8 7 37 37 H 1.09000 * 117.49531 * 214.97883 * 18 8 7 38 38 H 1.08997 * 117.49796 * 359.96885 * 18 8 7 39 39 H 1.08996 * 110.34960 * 341.71952 * 19 6 5 40 40 H 1.09003 * 110.34353 * 219.40830 * 19 6 5 41 41 H 1.09000 * 108.49137 * 145.85402 * 20 19 6 42 42 H 1.08999 * 108.48882 * 28.42717 * 20 19 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0421 1.4417 0.0000 4 6 2.0342 -0.7143 -1.2263 5 6 1.1444 -1.8558 -1.7741 6 7 0.6168 -2.8321 -0.8067 7 6 0.0680 -4.0093 -1.4928 8 6 1.1014 -4.5504 -2.4829 9 6 1.2628 -3.7558 -3.7531 10 1 2.1944 -3.2497 -3.9587 11 6 0.2211 -3.6751 -4.6527 12 7 0.2378 -2.7605 -5.5978 13 14 -1.2139 -4.8645 -4.5294 14 1 -2.2087 -4.3411 -3.5590 15 1 -1.8520 -5.0103 -5.8623 16 1 -0.7219 -6.1877 -4.0687 17 6 1.2651 -6.0690 -2.5738 18 6 2.3498 -5.2206 -1.9053 19 6 1.6157 -3.2135 0.1497 20 6 1.2954 -2.3997 1.3962 21 16 2.1493 -0.8771 1.5063 22 1 -0.3634 0.5137 -0.8899 23 1 -0.3634 0.5139 0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 1.6796 1.9562 0.8899 26 1 3.1321 1.4401 -0.0005 27 1 1.6796 1.9560 -0.8900 28 1 2.1659 0.0244 -2.0170 29 1 3.0132 -1.1335 -0.9941 30 1 1.7232 -2.4026 -2.5184 31 1 0.2962 -1.4003 -2.2852 32 1 -0.1701 -4.7794 -0.7590 33 1 -0.8373 -3.7274 -2.0303 34 1 -0.4951 -2.7035 -6.2305 35 1 0.6369 -6.6824 -1.9281 36 1 1.4899 -6.4932 -3.5524 37 1 3.2877 -5.0870 -2.4443 38 1 2.4350 -5.2756 -0.8201 39 1 2.6099 -2.9641 -0.2207 40 1 1.5464 -4.2798 0.3651 41 1 1.5423 -2.9985 2.2729 42 1 0.2244 -2.1971 1.4111 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000231046469.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:52:33 Heat of formation + Delta-G solvation = 41.524310 kcal Electronic energy + Delta-G solvation = -20478.146190 eV Core-core repulsion = 17778.684532 eV Total energy + Delta-G solvation = -2699.461658 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.151 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.13859 -36.53798 -34.59336 -32.30643 -30.79338 -28.84992 -27.14044 -26.26367 -24.64704 -23.21079 -21.75528 -20.91977 -19.42778 -18.46642 -16.72417 -16.18422 -15.41988 -15.16850 -14.73155 -14.31991 -14.11109 -13.82730 -13.17707 -13.06121 -12.93727 -12.65944 -12.20186 -12.08103 -11.81439 -11.74587 -11.50771 -11.12636 -10.89173 -10.83452 -10.62450 -10.55087 -10.38072 -10.22187 -10.12746 -10.04363 -9.46050 -9.28141 -9.06866 -8.72723 -8.48874 -7.47696 -7.29799 -6.23365 -4.13523 2.16865 2.89148 3.23281 3.34291 3.41459 4.35599 4.54544 4.92322 4.98209 5.10881 5.16832 5.37650 5.44017 5.51833 5.65678 5.78161 5.82409 5.85490 5.87058 5.99973 6.02978 6.04887 6.10964 6.14525 6.16808 6.26511 6.31163 6.36972 6.44914 6.55211 6.65117 6.72975 6.78001 6.94759 7.04916 7.11251 7.42208 7.64071 7.83129 7.99130 8.36060 8.75275 9.41185 10.87172 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.024188 B = 0.007351 C = 0.006441 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1157.336147 B = 3807.970204 C = 4346.292899 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.001 3.999 3 C -0.129 4.129 4 C -0.112 4.112 5 C 0.024 3.976 6 N -0.525 5.525 7 C 0.085 3.915 8 C -0.030 4.030 9 C -0.485 4.485 10 H 0.079 0.921 11 C 0.083 3.917 12 N -0.885 5.885 13 Si 0.866 3.134 14 H -0.275 1.275 15 H -0.294 1.294 16 H -0.253 1.253 17 C -0.195 4.195 18 C -0.188 4.188 19 C 0.058 3.942 20 C -0.106 4.106 21 S -0.265 6.265 22 H 0.059 0.941 23 H 0.048 0.952 24 H 0.094 0.906 25 H 0.059 0.941 26 H 0.059 0.941 27 H 0.068 0.932 28 H 0.071 0.929 29 H 0.060 0.940 30 H 0.117 0.883 31 H 0.062 0.938 32 H 0.050 0.950 33 H 0.072 0.928 34 H 0.266 0.734 35 H 0.066 0.934 36 H 0.083 0.917 37 H 0.081 0.919 38 H 0.074 0.926 39 H 0.060 0.940 40 H 0.069 0.931 41 H 0.086 0.914 42 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.036 2.692 10.780 11.159 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.108 4.108 3 C -0.188 4.188 4 C -0.151 4.151 5 C -0.102 4.102 6 N -0.248 5.248 7 C -0.042 4.042 8 C -0.032 4.032 9 C -0.522 4.522 10 H 0.097 0.903 11 C -0.121 4.121 12 N -0.521 5.521 13 Si 0.693 3.307 14 H -0.201 1.201 15 H -0.221 1.221 16 H -0.177 1.177 17 C -0.233 4.233 18 C -0.225 4.225 19 C -0.073 4.073 20 C -0.256 4.256 21 S -0.037 6.037 22 H 0.078 0.922 23 H 0.067 0.933 24 H 0.113 0.887 25 H 0.078 0.922 26 H 0.078 0.922 27 H 0.087 0.913 28 H 0.090 0.910 29 H 0.079 0.921 30 H 0.134 0.866 31 H 0.080 0.920 32 H 0.069 0.931 33 H 0.090 0.910 34 H 0.075 0.925 35 H 0.085 0.915 36 H 0.102 0.898 37 H 0.099 0.901 38 H 0.092 0.908 39 H 0.078 0.922 40 H 0.088 0.912 41 H 0.105 0.895 42 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 1.279 3.341 11.673 12.209 hybrid contribution -1.048 -1.529 -1.349 2.293 sum 0.230 1.812 10.323 10.484 Atomic orbital electron populations 1.22256 0.92621 1.05098 1.01056 1.22594 0.98515 0.96294 0.93378 1.21746 1.01308 0.93488 1.02216 1.21904 0.99863 0.97794 0.95585 1.23071 1.00110 0.92323 0.94702 1.61747 1.33278 1.12827 1.16898 1.22020 0.97487 0.90311 0.94415 1.20210 0.94675 0.90901 0.97408 1.20033 1.01206 1.30171 1.00762 0.90343 1.24849 0.97689 0.94515 0.95009 1.69946 1.32886 1.31261 1.17986 0.87034 0.82715 0.83917 0.77009 1.20140 1.22071 1.17692 1.23050 1.03017 0.96424 1.00823 1.22905 0.94301 1.07506 0.97759 1.21803 0.95759 0.97865 0.91895 1.22764 1.04209 0.96824 1.01760 1.85960 1.63793 1.16068 1.37857 0.92199 0.93288 0.88746 0.92221 0.92218 0.91339 0.91020 0.92145 0.86568 0.91963 0.93137 0.90989 0.92469 0.91511 0.89801 0.90085 0.90762 0.92162 0.91247 0.89520 0.88935 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.23 7.32 37.16 0.27 -1.96 16 2 C 0.00 0.02 0.88 -91.82 -0.08 -0.06 16 3 C -0.13 -1.62 8.31 37.16 0.31 -1.31 16 4 C -0.11 -1.85 4.41 -27.00 -0.12 -1.97 16 5 C 0.02 0.47 3.57 -2.73 -0.01 0.46 16 6 N -0.53 -9.42 2.70 -236.51 -0.64 -10.06 16 7 C 0.09 1.69 5.02 -3.82 -0.02 1.67 16 8 C -0.03 -0.63 0.37 -155.66 -0.06 -0.69 16 9 C -0.49 -12.18 6.44 -34.44 -0.22 -12.40 16 10 H 0.08 2.18 7.36 -52.49 -0.39 1.80 16 11 C 0.08 2.20 5.41 -17.82 -0.10 2.10 16 12 N -0.89 -24.97 13.96 55.43 0.77 -24.20 16 13 Si 0.87 20.32 25.56 -169.99 -4.34 15.97 16 14 H -0.28 -6.37 6.73 56.52 0.38 -5.99 16 15 H -0.29 -7.07 7.11 56.52 0.40 -6.66 16 16 H -0.25 -5.70 5.80 56.52 0.33 -5.37 16 17 C -0.19 -3.92 7.71 -26.69 -0.21 -4.12 16 18 C -0.19 -3.58 8.98 -26.69 -0.24 -3.82 16 19 C 0.06 0.94 3.81 -6.03 -0.02 0.91 16 20 C -0.11 -1.55 5.24 36.79 0.19 -1.36 16 21 S -0.26 -3.94 20.78 -107.50 -2.23 -6.18 16 22 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 23 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 24 H 0.09 1.54 4.34 -51.93 -0.23 1.31 16 25 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 26 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 27 H 0.07 0.80 8.07 -51.93 -0.42 0.38 16 28 H 0.07 1.16 7.67 -51.93 -0.40 0.76 16 29 H 0.06 1.02 6.80 -51.93 -0.35 0.67 16 30 H 0.12 2.61 3.48 -51.93 -0.18 2.43 16 31 H 0.06 1.33 7.93 -51.93 -0.41 0.92 16 32 H 0.05 0.91 7.57 -51.93 -0.39 0.52 16 33 H 0.07 1.57 5.83 -51.93 -0.30 1.27 16 34 H 0.27 7.16 8.31 -40.82 -0.34 6.82 16 35 H 0.07 1.24 8.12 -51.93 -0.42 0.81 16 36 H 0.08 1.78 8.06 -51.93 -0.42 1.36 16 37 H 0.08 1.59 8.14 -51.93 -0.42 1.17 16 38 H 0.07 1.27 5.78 -51.93 -0.30 0.97 16 39 H 0.06 1.04 6.28 -51.93 -0.33 0.72 16 40 H 0.07 1.09 5.67 -51.93 -0.29 0.79 16 41 H 0.09 1.15 8.14 -48.90 -0.40 0.76 16 42 H 0.09 1.41 6.33 -48.90 -0.31 1.10 16 LS Contribution 306.56 15.07 4.62 4.62 Total: -1.00 -25.57 306.56 -9.01 -34.58 By element: Atomic # 1 Polarization: 14.70 SS G_CDS: -6.88 Total: 7.82 kcal Atomic # 6 Polarization: -22.26 SS G_CDS: -0.30 Total: -22.56 kcal Atomic # 7 Polarization: -34.39 SS G_CDS: 0.13 Total: -34.26 kcal Atomic # 14 Polarization: 20.32 SS G_CDS: -4.34 Total: 15.97 kcal Atomic # 16 Polarization: -3.94 SS G_CDS: -2.23 Total: -6.18 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -25.57 -9.01 -34.58 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000231046469.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.104 kcal (2) G-P(sol) polarization free energy of solvation -25.572 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.532 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.008 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.579 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.524 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds