Wall clock time and date at job start Mon Mar 30 2020 00:52:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53000 * 109.55751 * 2 1 4 4 C 1.50604 * 109.55965 * 239.78097 * 2 1 3 5 5 C 1.54757 * 116.45948 * 329.13618 * 4 2 1 6 6 N 1.47214 * 117.55552 * 313.53054 * 5 4 2 7 7 C 1.46901 * 111.00223 * 193.28838 * 6 5 4 8 8 C 1.53004 * 109.46721 * 51.14598 * 7 6 5 9 9 C 1.50697 * 115.54733 * 284.47341 * 8 7 6 10 10 H 1.07997 * 119.99716 * 114.54326 * 9 8 7 11 11 C 1.37875 * 120.00025 * 294.53159 * 9 8 7 12 12 N 1.31520 * 119.99936 * 164.78020 * 11 9 8 13 13 Si 1.86797 * 120.00259 * 344.78656 * 11 9 8 14 14 H 1.48499 * 109.47448 * 85.33729 * 13 11 9 15 15 H 1.48499 * 109.47310 * 205.34109 * 13 11 9 16 16 H 1.48505 * 109.46937 * 325.33797 * 13 11 9 17 17 C 1.53002 * 117.49507 * 138.80485 * 8 7 6 18 18 C 1.53003 * 117.49897 * 70.14804 * 8 7 6 19 19 C 1.43450 * 111.40444 * 317.54369 * 6 5 4 20 20 C 1.52276 * 104.90284 * 100.56859 * 19 6 5 21 21 S 1.74917 * 114.45856 * 267.14060 * 20 19 6 22 22 H 1.08991 * 109.47525 * 60.00419 * 1 2 3 23 23 H 1.09002 * 109.47178 * 300.00396 * 1 2 3 24 24 H 1.09002 * 109.47010 * 180.02562 * 1 2 3 25 25 H 1.08995 * 109.47805 * 59.99508 * 3 2 1 26 26 H 1.08997 * 109.47078 * 180.02562 * 3 2 1 27 27 H 1.09000 * 109.46668 * 299.99853 * 3 2 1 28 28 H 1.09002 * 108.04227 * 91.09469 * 4 2 1 29 29 H 1.09003 * 108.03875 * 207.53672 * 4 2 1 30 30 H 1.09000 * 107.84350 * 191.45396 * 5 4 2 31 31 H 1.09005 * 107.76368 * 75.54138 * 5 4 2 32 32 H 1.09000 * 109.46897 * 171.14067 * 7 6 5 33 33 H 1.08992 * 109.47341 * 291.14289 * 7 6 5 34 34 H 0.96993 * 120.00332 * 180.02562 * 12 11 9 35 35 H 1.08991 * 117.50284 * 359.97438 * 17 8 7 36 36 H 1.09005 * 117.49679 * 145.02143 * 17 8 7 37 37 H 1.09000 * 117.49531 * 214.97883 * 18 8 7 38 38 H 1.08997 * 117.49796 * 359.96885 * 18 8 7 39 39 H 1.08996 * 110.34960 * 341.71952 * 19 6 5 40 40 H 1.09003 * 110.34353 * 219.40830 * 19 6 5 41 41 H 1.09000 * 108.49137 * 145.85402 * 20 19 6 42 42 H 1.08999 * 108.48882 * 28.42717 * 20 19 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0421 1.4417 0.0000 4 6 2.0342 -0.7143 -1.2263 5 6 1.1444 -1.8558 -1.7741 6 7 0.6168 -2.8321 -0.8067 7 6 0.0680 -4.0093 -1.4928 8 6 1.1014 -4.5504 -2.4829 9 6 1.2628 -3.7558 -3.7531 10 1 2.1944 -3.2497 -3.9587 11 6 0.2211 -3.6751 -4.6527 12 7 0.2378 -2.7605 -5.5978 13 14 -1.2139 -4.8645 -4.5294 14 1 -2.2087 -4.3411 -3.5590 15 1 -1.8520 -5.0103 -5.8623 16 1 -0.7219 -6.1877 -4.0687 17 6 1.2651 -6.0690 -2.5738 18 6 2.3498 -5.2206 -1.9053 19 6 1.6157 -3.2135 0.1497 20 6 1.2954 -2.3997 1.3962 21 16 2.1493 -0.8771 1.5063 22 1 -0.3634 0.5137 -0.8899 23 1 -0.3634 0.5139 0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 1.6796 1.9562 0.8899 26 1 3.1321 1.4401 -0.0005 27 1 1.6796 1.9560 -0.8900 28 1 2.1659 0.0244 -2.0170 29 1 3.0132 -1.1335 -0.9941 30 1 1.7232 -2.4026 -2.5184 31 1 0.2962 -1.4003 -2.2852 32 1 -0.1701 -4.7794 -0.7590 33 1 -0.8373 -3.7274 -2.0303 34 1 -0.4951 -2.7035 -6.2305 35 1 0.6369 -6.6824 -1.9281 36 1 1.4899 -6.4932 -3.5524 37 1 3.2877 -5.0870 -2.4443 38 1 2.4350 -5.2756 -0.8201 39 1 2.6099 -2.9641 -0.2207 40 1 1.5464 -4.2798 0.3651 41 1 1.5423 -2.9985 2.2729 42 1 0.2244 -2.1971 1.4111 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000231046469.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:52:32 Heat of formation + Delta-G solvation = 28.535043 kcal Electronic energy + Delta-G solvation = -20478.709447 eV Core-core repulsion = 17778.684532 eV Total energy + Delta-G solvation = -2700.024915 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.151 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.66103 -37.97879 -35.97278 -34.29128 -32.16206 -30.24661 -28.35537 -28.05113 -26.19448 -24.57688 -23.34337 -22.26956 -21.07590 -19.95235 -18.53590 -17.48745 -16.98669 -16.62150 -16.31942 -15.65012 -15.59206 -15.25142 -14.87173 -14.49998 -14.42971 -14.01769 -13.72406 -13.46998 -13.20920 -12.96642 -12.90754 -12.79671 -12.35739 -12.27539 -12.25044 -12.07065 -11.86235 -11.77369 -11.58513 -11.42372 -11.19878 -10.84390 -10.59574 -10.44490 -10.28506 -9.02048 -8.49754 -8.28055 -6.17763 0.99148 1.35478 1.41891 1.52569 1.71042 2.39782 2.90306 3.20199 3.42536 3.74633 3.93103 4.04583 4.16866 4.24913 4.29979 4.36754 4.40404 4.46732 4.53296 4.57834 4.67403 4.74179 4.80243 4.87243 4.92439 4.95552 4.99732 5.04371 5.09306 5.15788 5.20051 5.24149 5.35215 5.43624 5.49474 5.57418 5.71862 5.76183 6.21385 6.34696 6.53512 6.73447 7.37011 8.86189 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.024188 B = 0.007351 C = 0.006441 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1157.336147 B = 3807.970204 C = 4346.292899 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.001 3.999 3 C -0.126 4.126 4 C -0.103 4.103 5 C 0.042 3.958 6 N -0.517 5.517 7 C 0.089 3.911 8 C -0.050 4.050 9 C -0.467 4.467 10 H 0.035 0.965 11 C 0.031 3.969 12 N -0.935 5.935 13 Si 0.918 3.082 14 H -0.269 1.269 15 H -0.304 1.304 16 H -0.232 1.232 17 C -0.189 4.189 18 C -0.169 4.169 19 C 0.060 3.940 20 C -0.102 4.102 21 S -0.261 6.261 22 H 0.054 0.946 23 H 0.064 0.936 24 H 0.079 0.921 25 H 0.072 0.928 26 H 0.062 0.938 27 H 0.074 0.926 28 H 0.068 0.932 29 H 0.056 0.944 30 H 0.081 0.919 31 H 0.030 0.970 32 H 0.079 0.921 33 H 0.048 0.952 34 H 0.262 0.738 35 H 0.095 0.905 36 H 0.069 0.931 37 H 0.069 0.931 38 H 0.103 0.897 39 H 0.048 0.952 40 H 0.084 0.916 41 H 0.108 0.892 42 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.787 1.689 13.658 13.785 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.108 4.108 3 C -0.184 4.184 4 C -0.143 4.143 5 C -0.085 4.085 6 N -0.239 5.239 7 C -0.039 4.039 8 C -0.052 4.052 9 C -0.504 4.504 10 H 0.053 0.947 11 C -0.168 4.168 12 N -0.574 5.574 13 Si 0.744 3.256 14 H -0.194 1.194 15 H -0.232 1.232 16 H -0.155 1.155 17 C -0.228 4.228 18 C -0.206 4.206 19 C -0.071 4.071 20 C -0.252 4.252 21 S -0.033 6.033 22 H 0.073 0.927 23 H 0.083 0.917 24 H 0.097 0.903 25 H 0.091 0.909 26 H 0.081 0.919 27 H 0.093 0.907 28 H 0.087 0.913 29 H 0.075 0.925 30 H 0.099 0.901 31 H 0.049 0.951 32 H 0.097 0.903 33 H 0.067 0.933 34 H 0.071 0.929 35 H 0.113 0.887 36 H 0.088 0.912 37 H 0.088 0.912 38 H 0.121 0.879 39 H 0.066 0.934 40 H 0.103 0.897 41 H 0.127 0.873 42 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 1.045 2.321 14.582 14.802 hybrid contribution -0.860 -1.179 -2.231 2.666 sum 0.185 1.142 12.351 12.405 Atomic orbital electron populations 1.22186 0.92576 1.04230 1.01559 1.22581 0.98514 0.97317 0.92356 1.21734 1.01484 0.92008 1.03191 1.21787 0.98915 0.96900 0.96678 1.22720 0.98319 0.92914 0.94548 1.61751 1.33878 1.12061 1.16239 1.21955 0.96036 0.91337 0.94540 1.20104 0.97134 0.91543 0.96462 1.20108 0.99068 1.29120 1.02123 0.94665 1.25535 1.00390 0.95911 0.94949 1.70080 1.34056 1.33625 1.19665 0.86197 0.80032 0.82891 0.76506 1.19422 1.23180 1.15480 1.23074 1.03516 0.95253 1.00935 1.22916 0.92983 1.05456 0.99225 1.21837 0.94453 0.99068 0.91731 1.22694 1.04030 0.96816 1.01642 1.85989 1.63862 1.16175 1.37291 0.92728 0.91739 0.90268 0.90924 0.91942 0.90719 0.91329 0.92504 0.90124 0.95123 0.90261 0.93331 0.92858 0.88714 0.91221 0.91242 0.87853 0.93371 0.89749 0.87349 0.89145 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.13 7.32 71.98 0.53 -3.60 16 2 C 0.00 0.04 0.88 -11.57 -0.01 0.03 16 3 C -0.13 -2.92 8.31 71.98 0.60 -2.32 16 4 C -0.10 -3.41 4.41 30.42 0.13 -3.28 16 5 C 0.04 1.66 3.57 86.84 0.31 1.97 16 6 N -0.52 -17.93 2.70 -902.17 -2.44 -20.37 16 7 C 0.09 3.37 5.02 86.30 0.43 3.80 16 8 C -0.05 -2.08 0.37 -52.93 -0.02 -2.10 16 9 C -0.47 -24.21 6.44 25.60 0.16 -24.05 16 10 H 0.04 2.09 7.36 -2.91 -0.02 2.07 16 11 C 0.03 1.68 5.41 84.65 0.46 2.14 16 12 N -0.94 -55.43 13.96 21.45 0.30 -55.13 16 13 Si 0.92 42.17 25.56 68.60 1.75 43.92 16 14 H -0.27 -11.97 6.73 99.48 0.67 -11.30 16 15 H -0.30 -14.41 7.11 99.48 0.71 -13.70 16 16 H -0.23 -9.75 5.80 99.48 0.58 -9.17 16 17 C -0.19 -7.10 7.71 30.62 0.24 -6.87 16 18 C -0.17 -6.07 8.98 30.62 0.27 -5.79 16 19 C 0.06 1.78 3.81 86.70 0.33 2.11 16 20 C -0.10 -2.68 5.24 71.74 0.38 -2.31 16 21 S -0.26 -7.11 20.78 -56.49 -1.17 -8.29 16 22 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 23 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 24 H 0.08 2.48 4.34 -2.39 -0.01 2.47 16 25 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 26 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 27 H 0.07 1.64 8.07 -2.39 -0.02 1.62 16 28 H 0.07 2.28 7.67 -2.39 -0.02 2.26 16 29 H 0.06 1.91 6.80 -2.39 -0.02 1.90 16 30 H 0.08 3.79 3.48 -2.39 -0.01 3.78 16 31 H 0.03 1.37 7.93 -2.38 -0.02 1.35 16 32 H 0.08 2.55 7.57 -2.39 -0.02 2.54 16 33 H 0.05 2.06 5.83 -2.39 -0.01 2.05 16 34 H 0.26 14.88 8.31 -92.71 -0.77 14.11 16 35 H 0.09 3.06 8.12 -2.39 -0.02 3.04 16 36 H 0.07 2.82 8.06 -2.38 -0.02 2.80 16 37 H 0.07 2.66 8.14 -2.39 -0.02 2.64 16 38 H 0.10 3.12 5.78 -2.39 -0.01 3.11 16 39 H 0.05 1.57 6.28 -2.39 -0.02 1.56 16 40 H 0.08 2.27 5.67 -2.39 -0.01 2.26 16 41 H 0.11 2.43 8.14 -4.31 -0.04 2.39 16 42 H 0.09 2.47 6.33 -4.31 -0.03 2.45 16 Total: -1.00 -56.94 306.56 3.05 -53.89 By element: Atomic # 1 Polarization: 25.45 SS G_CDS: 0.80 Total: 26.25 kcal Atomic # 6 Polarization: -44.08 SS G_CDS: 3.81 Total: -40.27 kcal Atomic # 7 Polarization: -73.36 SS G_CDS: -2.14 Total: -75.50 kcal Atomic # 14 Polarization: 42.17 SS G_CDS: 1.75 Total: 43.92 kcal Atomic # 16 Polarization: -7.11 SS G_CDS: -1.17 Total: -8.29 kcal Total: -56.94 3.05 -53.89 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000231046469.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.421 kcal (2) G-P(sol) polarization free energy of solvation -56.936 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.485 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.050 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.886 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.535 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds