Wall clock time and date at job start Mon Mar 30 2020 01:15:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81394 * 1 3 3 C 1.81396 * 102.99980 * 2 1 4 4 H 1.09001 * 109.47568 * 305.00280 * 3 2 1 5 5 C 1.53002 * 109.47123 * 65.00387 * 3 2 1 6 6 C 1.53008 * 109.47150 * 179.97438 * 5 3 2 7 7 C 1.52998 * 109.46870 * 299.99625 * 6 5 3 8 8 C 1.53006 * 109.47197 * 60.00450 * 7 6 5 9 9 H 1.08998 * 109.46819 * 59.99168 * 8 7 6 10 10 N 1.46896 * 109.47316 * 179.97438 * 8 7 6 11 11 C 1.46894 * 111.00158 * 275.00170 * 10 8 7 12 12 C 1.53001 * 109.47168 * 185.41878 * 11 10 8 13 13 C 1.50703 * 115.55019 * 65.04385 * 12 11 10 14 14 H 1.07997 * 120.00258 * 265.31857 * 13 12 11 15 15 C 1.37876 * 119.99727 * 85.32168 * 13 12 11 16 16 N 1.31513 * 120.00077 * 353.47746 * 15 13 12 17 17 Si 1.86796 * 119.99988 * 173.47593 * 15 13 12 18 18 H 1.48502 * 109.47320 * 60.00143 * 17 15 13 19 19 H 1.48503 * 109.47393 * 180.02562 * 17 15 13 20 20 H 1.48494 * 109.47436 * 299.99968 * 17 15 13 21 21 C 1.52999 * 117.49521 * 279.37765 * 12 11 10 22 22 C 1.52996 * 117.49742 * 210.71793 * 12 11 10 23 23 C 1.53001 * 109.47132 * 185.00236 * 3 2 1 24 24 H 1.09009 * 109.47170 * 299.99846 * 1 2 3 25 25 H 1.08996 * 109.47532 * 59.99678 * 1 2 3 26 26 H 1.09002 * 109.47324 * 179.97438 * 1 2 3 27 27 H 1.09005 * 109.47391 * 59.99793 * 5 3 2 28 28 H 1.09000 * 109.46819 * 299.99546 * 5 3 2 29 29 H 1.08994 * 109.46551 * 59.99929 * 6 5 3 30 30 H 1.09000 * 109.46698 * 179.97438 * 6 5 3 31 31 H 1.08996 * 109.46807 * 179.97438 * 7 6 5 32 32 H 1.08990 * 109.47775 * 300.00050 * 7 6 5 33 33 H 1.00904 * 110.99579 * 38.95598 * 10 8 7 34 34 H 1.09002 * 109.47117 * 305.41436 * 11 10 8 35 35 H 1.08994 * 109.47663 * 65.41438 * 11 10 8 36 36 H 0.97001 * 120.00048 * 180.02562 * 16 15 13 37 37 H 1.08994 * 117.50056 * 359.97438 * 21 12 11 38 38 H 1.09007 * 117.49726 * 145.02258 * 21 12 11 39 39 H 1.09002 * 117.49572 * 214.97278 * 22 12 11 40 40 H 1.08992 * 117.50271 * 359.97438 * 22 12 11 41 41 H 1.08995 * 109.47258 * 59.99936 * 23 3 2 42 42 H 1.09005 * 109.46937 * 299.99934 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8139 0.0000 0.0000 3 6 2.2220 1.7675 0.0000 4 1 1.7294 2.2542 -0.8418 5 6 1.7428 2.4015 1.3074 6 6 2.0875 3.8922 1.3077 7 6 3.6025 4.0653 1.1823 8 6 4.0818 3.4313 -0.1252 9 1 3.5894 3.9182 -0.9669 10 7 5.5363 3.5980 -0.2459 11 6 5.8698 4.9037 -0.8303 12 6 7.3794 4.9868 -1.0650 13 6 7.9327 4.0246 -2.0844 14 1 8.3402 3.0763 -1.7664 15 6 7.9187 4.3549 -3.4229 16 7 7.3089 5.4490 -3.8238 17 14 8.7659 3.2485 -4.6668 18 1 8.1535 1.8964 -4.6247 19 1 8.6080 3.8218 -6.0277 20 1 10.2103 3.1482 -4.3373 21 6 8.2632 5.3289 0.1362 22 6 8.0348 6.3658 -0.9665 23 6 3.7369 1.9412 -0.1258 24 1 -0.3634 0.5138 0.8901 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3634 -1.0277 -0.0005 27 1 2.2354 1.9149 2.1492 28 1 0.6635 2.2778 1.3969 29 1 1.5952 4.3791 0.4659 30 1 1.7457 4.3440 2.2389 31 1 3.8481 5.1272 1.1820 32 1 4.0948 3.5784 2.0240 33 1 5.9896 3.4750 0.6471 34 1 5.3476 5.0209 -1.7799 35 1 5.5641 5.6963 -0.1474 36 1 7.2988 5.6812 -4.7656 37 1 7.7692 5.4952 1.0934 38 1 9.2451 4.8584 0.1888 39 1 8.8664 6.5769 -1.6388 40 1 7.3905 7.2139 -0.7350 41 1 4.0783 1.4895 -1.0571 42 1 4.2295 1.4545 0.7161 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000235136485.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:15:39 Heat of formation + Delta-G solvation = -12.500053 kcal Electronic energy + Delta-G solvation = -18980.336771 eV Core-core repulsion = 16278.532441 eV Total energy + Delta-G solvation = -2701.804330 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.151 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.98051 -38.39054 -35.15953 -33.87124 -31.79109 -30.51466 -29.40672 -27.55778 -25.74393 -23.66418 -23.00505 -22.45639 -21.18859 -20.66921 -18.05032 -17.51333 -16.65816 -16.33709 -16.07848 -15.53677 -15.38272 -15.26298 -14.93249 -14.64056 -14.30713 -14.26950 -13.85250 -13.57897 -13.39139 -13.07348 -12.85061 -12.80941 -12.61780 -12.47909 -12.33800 -12.08632 -12.00230 -11.78018 -11.53000 -11.42024 -11.15533 -10.72123 -10.64942 -10.34252 -9.89519 -8.96307 -8.68153 -8.02696 -6.08204 0.74784 1.43521 1.44374 1.51073 1.69677 2.48516 3.22522 3.27701 3.62501 3.66362 3.93197 4.03878 4.12197 4.19514 4.33892 4.36804 4.38622 4.43955 4.45932 4.54513 4.58563 4.66333 4.75481 4.80905 4.87946 4.93974 5.01429 5.05022 5.08648 5.12754 5.18281 5.20379 5.30307 5.38615 5.42804 5.66071 5.77766 5.90224 6.40701 6.54452 6.80059 6.95000 7.56748 9.06149 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.020023 B = 0.004824 C = 0.004134 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1398.087425 B = 5802.499887 C = 6771.677591 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 S -0.319 6.319 3 C -0.035 4.035 4 H 0.082 0.918 5 C -0.103 4.103 6 C -0.106 4.106 7 C -0.142 4.142 8 C 0.098 3.902 9 H 0.056 0.944 10 N -0.677 5.677 11 C 0.129 3.871 12 C 0.025 3.975 13 C -0.480 4.480 14 H 0.046 0.954 15 C 0.023 3.977 16 N -0.912 5.912 17 Si 0.941 3.059 18 H -0.278 1.278 19 H -0.287 1.287 20 H -0.274 1.274 21 C -0.187 4.187 22 C -0.167 4.167 23 C -0.076 4.076 24 H 0.091 0.909 25 H 0.080 0.920 26 H 0.110 0.890 27 H 0.074 0.926 28 H 0.079 0.921 29 H 0.061 0.939 30 H 0.083 0.917 31 H 0.056 0.944 32 H 0.071 0.929 33 H 0.338 0.662 34 H 0.037 0.963 35 H 0.009 0.991 36 H 0.255 0.745 37 H 0.090 0.910 38 H 0.074 0.926 39 H 0.055 0.945 40 H 0.071 0.929 41 H 0.050 0.950 42 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.709 -5.066 11.382 19.276 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.277 4.277 2 S -0.090 6.090 3 C -0.164 4.164 4 H 0.101 0.899 5 C -0.142 4.142 6 C -0.146 4.146 7 C -0.181 4.181 8 C -0.014 4.014 9 H 0.074 0.926 10 N -0.307 5.307 11 C -0.001 4.001 12 C 0.024 3.976 13 C -0.518 4.518 14 H 0.064 0.936 15 C -0.176 4.176 16 N -0.551 5.551 17 Si 0.768 3.232 18 H -0.203 1.203 19 H -0.212 1.212 20 H -0.199 1.199 21 C -0.224 4.224 22 C -0.205 4.205 23 C -0.116 4.116 24 H 0.109 0.891 25 H 0.099 0.901 26 H 0.129 0.871 27 H 0.093 0.907 28 H 0.097 0.903 29 H 0.080 0.920 30 H 0.102 0.898 31 H 0.074 0.926 32 H 0.089 0.911 33 H 0.156 0.844 34 H 0.056 0.944 35 H 0.027 0.973 36 H 0.064 0.936 37 H 0.108 0.892 38 H 0.092 0.908 39 H 0.074 0.926 40 H 0.090 0.910 41 H 0.069 0.931 42 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -14.041 -6.232 10.572 18.648 hybrid contribution -0.243 1.233 -0.542 1.368 sum -14.284 -5.000 10.030 18.156 Atomic orbital electron populations 1.23426 0.91129 1.07328 1.05796 1.87144 1.10791 1.13006 1.98060 1.23099 0.99228 0.92147 1.01974 0.89919 1.21816 1.01505 0.95515 0.95377 1.21464 0.94639 0.95706 1.02825 1.22235 0.97553 1.00510 0.97837 1.21478 0.88155 0.94844 0.96910 0.92592 1.60160 1.07519 1.33028 1.29963 1.21146 0.95594 0.87541 0.95784 1.18941 0.90061 0.94118 0.94437 1.20513 1.38362 1.02045 0.90904 0.93607 1.25542 0.95910 0.96362 0.99784 1.70097 1.43522 1.26066 1.15413 0.85887 0.79383 0.79419 0.78525 1.20321 1.21243 1.19916 1.22967 1.01588 1.04743 0.93119 1.22431 1.03084 0.93511 1.01461 1.21146 0.92260 0.96036 1.02133 0.89056 0.90050 0.87134 0.90730 0.90284 0.91993 0.89803 0.92574 0.91068 0.84355 0.94394 0.97308 0.93566 0.89165 0.90765 0.92596 0.91018 0.93135 0.91403 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.60 10.45 113.37 1.18 -0.41 16 2 S -0.32 -7.49 21.79 -56.49 -1.23 -8.72 16 3 C -0.04 -0.82 2.65 30.60 0.08 -0.74 16 4 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 5 C -0.10 -1.85 5.11 30.60 0.16 -1.70 16 6 C -0.11 -1.96 5.92 30.60 0.18 -1.78 16 7 C -0.14 -3.39 5.17 30.60 0.16 -3.23 16 8 C 0.10 3.02 2.47 44.90 0.11 3.13 16 9 H 0.06 1.92 7.71 -2.39 -0.02 1.90 16 10 N -0.68 -25.77 6.12 -491.67 -3.01 -28.78 16 11 C 0.13 5.66 5.34 86.30 0.46 6.12 16 12 C 0.03 1.22 1.55 -52.93 -0.08 1.14 16 13 C -0.48 -26.64 8.74 25.60 0.22 -26.41 16 14 H 0.05 2.59 7.82 -2.91 -0.02 2.57 16 15 C 0.02 1.29 5.39 84.65 0.46 1.74 16 16 N -0.91 -53.09 12.92 21.45 0.28 -52.82 16 17 Si 0.94 45.09 29.54 68.60 2.03 47.11 16 18 H -0.28 -13.24 7.11 99.48 0.71 -12.53 16 19 H -0.29 -13.50 7.11 99.48 0.71 -12.79 16 20 H -0.27 -12.78 7.11 99.48 0.71 -12.07 16 21 C -0.19 -7.84 9.96 30.62 0.30 -7.53 16 22 C -0.17 -7.83 9.42 30.62 0.29 -7.54 16 23 C -0.08 -2.22 4.81 30.58 0.15 -2.07 16 24 H 0.09 1.07 7.14 -2.39 -0.02 1.05 16 25 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 26 H 0.11 1.36 8.14 -2.39 -0.02 1.34 16 27 H 0.07 1.38 8.14 -2.38 -0.02 1.36 16 28 H 0.08 1.14 6.92 -2.39 -0.02 1.12 16 29 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 30 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 31 H 0.06 1.42 7.56 -2.39 -0.02 1.40 16 32 H 0.07 1.60 8.13 -2.39 -0.02 1.58 16 33 H 0.34 11.85 8.53 -89.69 -0.76 11.08 16 34 H 0.04 1.93 7.92 -2.39 -0.02 1.91 16 35 H 0.01 0.36 7.52 -2.39 -0.02 0.34 16 36 H 0.26 14.37 8.31 -92.71 -0.77 13.60 16 37 H 0.09 3.22 8.14 -2.39 -0.02 3.20 16 38 H 0.07 3.13 8.14 -2.38 -0.02 3.11 16 39 H 0.06 2.87 8.14 -2.39 -0.02 2.85 16 40 H 0.07 3.14 8.14 -2.39 -0.02 3.12 16 41 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 42 H 0.07 1.96 8.14 -2.38 -0.02 1.94 16 Total: -1.00 -61.21 343.95 1.94 -59.27 By element: Atomic # 1 Polarization: 23.02 SS G_CDS: 0.20 Total: 23.23 kcal Atomic # 6 Polarization: -42.96 SS G_CDS: 3.67 Total: -39.29 kcal Atomic # 7 Polarization: -78.86 SS G_CDS: -2.73 Total: -81.60 kcal Atomic # 14 Polarization: 45.09 SS G_CDS: 2.03 Total: 47.11 kcal Atomic # 16 Polarization: -7.49 SS G_CDS: -1.23 Total: -8.72 kcal Total: -61.21 1.94 -59.27 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000235136485.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.770 kcal (2) G-P(sol) polarization free energy of solvation -61.206 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.436 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.936 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.270 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.500 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds