Wall clock time and date at job start Mon Mar 30 2020 01:15:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81401 * 1 3 3 C 1.81404 * 102.99822 * 2 1 4 4 H 1.09005 * 109.46986 * 55.00642 * 3 2 1 5 5 C 1.52993 * 109.47255 * 295.00093 * 3 2 1 6 6 C 1.53006 * 109.47138 * 179.97438 * 5 3 2 7 7 C 1.52994 * 109.46802 * 59.99945 * 6 5 3 8 8 C 1.53000 * 109.47579 * 299.99829 * 7 6 5 9 9 H 1.08998 * 109.47288 * 180.02562 * 8 7 6 10 10 N 1.46895 * 109.47360 * 300.00343 * 8 7 6 11 11 C 1.46900 * 111.00315 * 272.57786 * 10 8 7 12 12 C 1.52996 * 109.47465 * 183.09148 * 11 10 8 13 13 C 1.50696 * 115.55296 * 304.97636 * 12 11 10 14 14 H 1.07994 * 120.00489 * 95.22088 * 13 12 11 15 15 C 1.37880 * 119.99644 * 275.22287 * 13 12 11 16 16 N 1.31516 * 119.99886 * 6.98265 * 15 13 12 17 17 Si 1.86802 * 119.99671 * 186.98777 * 15 13 12 18 18 H 1.48498 * 109.47438 * 359.97438 * 17 15 13 19 19 H 1.48498 * 109.46839 * 239.99573 * 17 15 13 20 20 H 1.48505 * 109.46753 * 120.00000 * 17 15 13 21 21 C 1.52998 * 117.49414 * 90.64102 * 12 11 10 22 22 C 1.52997 * 117.49687 * 159.29876 * 12 11 10 23 23 C 1.53002 * 109.46767 * 174.99808 * 3 2 1 24 24 H 1.08995 * 109.46919 * 299.99658 * 1 2 3 25 25 H 1.09003 * 109.47370 * 59.99837 * 1 2 3 26 26 H 1.08999 * 109.46894 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.47228 * 299.99775 * 5 3 2 28 28 H 1.08998 * 109.47029 * 60.00145 * 5 3 2 29 29 H 1.08998 * 109.47284 * 179.97438 * 6 5 3 30 30 H 1.09004 * 109.46880 * 299.99992 * 6 5 3 31 31 H 1.09007 * 109.47272 * 180.02562 * 7 6 5 32 32 H 1.09004 * 109.47365 * 60.00344 * 7 6 5 33 33 H 1.00901 * 111.00544 * 148.61968 * 10 8 7 34 34 H 1.09000 * 109.47119 * 63.09129 * 11 10 8 35 35 H 1.09006 * 109.46699 * 303.09550 * 11 10 8 36 36 H 0.96995 * 120.00068 * 5.61443 * 16 15 13 37 37 H 1.09002 * 117.49802 * 215.00073 * 21 12 11 38 38 H 1.09002 * 117.50319 * 0.02562 * 21 12 11 39 39 H 1.08995 * 117.50165 * 359.97438 * 22 12 11 40 40 H 1.09002 * 117.49666 * 144.98108 * 22 12 11 41 41 H 1.09005 * 109.46686 * 60.00650 * 23 3 2 42 42 H 1.08991 * 109.47676 * 300.00202 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2220 1.7676 0.0000 4 1 1.7295 2.2541 0.8419 5 6 1.7427 2.4016 -1.3073 6 6 2.0863 3.8926 -1.3070 7 6 3.6011 4.0668 -1.1809 8 6 4.0805 3.4327 0.1264 9 1 5.1596 3.5572 0.2163 10 7 3.4162 4.0880 1.2609 11 6 4.1667 5.2729 1.6977 12 6 3.4879 5.8824 2.9259 13 6 2.0299 6.2250 2.7598 14 1 1.2712 5.5238 3.0743 15 6 1.6645 7.4338 2.2062 16 7 2.5812 8.2282 1.6980 17 14 -0.1326 7.9430 2.1781 18 1 -0.9580 6.8808 2.8071 19 1 -0.5689 8.1412 0.7726 20 1 -0.2993 9.2116 2.9318 21 6 3.9467 5.3944 4.3015 22 6 4.3309 6.7953 3.8186 23 6 3.7370 1.9412 0.1258 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 2.2354 1.9150 -2.1491 28 1 0.6635 2.2779 -1.3968 29 1 1.7453 4.3443 -2.2385 30 1 1.5933 4.3789 -0.4651 31 1 3.8459 5.1290 -1.1803 32 1 4.0941 3.5805 -2.0228 33 1 3.2836 3.4421 2.0247 34 1 4.1876 6.0070 0.8923 35 1 5.1864 4.9836 1.9521 36 1 3.5023 7.9301 1.6385 37 1 3.1938 5.3213 5.0864 38 1 4.7323 4.6395 4.3315 39 1 5.3691 6.9612 3.5312 40 1 3.8309 7.6439 4.2855 41 1 4.2295 1.4546 -0.7161 42 1 4.0784 1.4895 1.0570 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000235162456.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:15:41 Heat of formation + Delta-G solvation = -13.233748 kcal Electronic energy + Delta-G solvation = -19584.696136 eV Core-core repulsion = 16882.859990 eV Total energy + Delta-G solvation = -2701.836146 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.151 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.12795 -38.59790 -34.82537 -33.82249 -31.79287 -30.71069 -29.47037 -27.04782 -25.94201 -23.63456 -23.20967 -22.94034 -21.20414 -20.00290 -18.54511 -17.54355 -16.75194 -16.25015 -15.85077 -15.62710 -15.42236 -15.34904 -14.75602 -14.64460 -14.36451 -14.21600 -14.04536 -13.60545 -13.42526 -13.04770 -12.96915 -12.75087 -12.62678 -12.46961 -12.32151 -12.19959 -11.93472 -11.66754 -11.36502 -11.25055 -11.10755 -10.60961 -10.40612 -10.39955 -10.13417 -9.03557 -8.65175 -8.39064 -6.08777 0.79422 1.55009 1.62551 1.67636 1.77823 2.63508 3.14681 3.35163 3.47168 3.70269 3.79034 3.98925 4.19871 4.27635 4.31704 4.33083 4.36797 4.40000 4.42391 4.53078 4.57816 4.58663 4.61459 4.71507 4.80067 4.84270 4.88055 5.01168 5.02242 5.10549 5.14934 5.17317 5.30642 5.34821 5.45714 5.56660 5.66253 6.24621 6.36937 6.44903 6.69183 6.86562 7.67476 9.00187 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.017767 B = 0.006054 C = 0.005488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1575.533082 B = 4624.021911 C = 5101.213539 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 S -0.305 6.305 3 C -0.031 4.031 4 H 0.079 0.921 5 C -0.097 4.097 6 C -0.105 4.105 7 C -0.101 4.101 8 C 0.091 3.909 9 H 0.042 0.958 10 N -0.661 5.661 11 C 0.120 3.880 12 C 0.001 3.999 13 C -0.542 4.542 14 H 0.036 0.964 15 C -0.018 4.018 16 N -0.939 5.939 17 Si 1.104 2.896 18 H -0.277 1.277 19 H -0.287 1.287 20 H -0.286 1.286 21 C -0.177 4.177 22 C -0.185 4.185 23 C -0.087 4.087 24 H 0.074 0.926 25 H 0.084 0.916 26 H 0.114 0.886 27 H 0.078 0.922 28 H 0.062 0.938 29 H 0.060 0.940 30 H 0.051 0.949 31 H 0.036 0.964 32 H 0.079 0.921 33 H 0.335 0.665 34 H 0.036 0.964 35 H 0.009 0.991 36 H 0.263 0.737 37 H 0.075 0.925 38 H 0.090 0.910 39 H 0.077 0.923 40 H 0.057 0.943 41 H 0.086 0.914 42 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.191 -14.538 -5.470 15.534 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.280 4.280 2 S -0.076 6.076 3 C -0.159 4.159 4 H 0.097 0.903 5 C -0.136 4.136 6 C -0.145 4.145 7 C -0.139 4.139 8 C -0.020 4.020 9 H 0.060 0.940 10 N -0.292 5.292 11 C -0.010 4.010 12 C 0.001 3.999 13 C -0.580 4.580 14 H 0.055 0.945 15 C -0.217 4.217 16 N -0.576 5.576 17 Si 0.929 3.071 18 H -0.202 1.202 19 H -0.213 1.213 20 H -0.213 1.213 21 C -0.214 4.214 22 C -0.223 4.223 23 C -0.126 4.126 24 H 0.093 0.907 25 H 0.103 0.897 26 H 0.132 0.868 27 H 0.097 0.903 28 H 0.081 0.919 29 H 0.078 0.922 30 H 0.070 0.930 31 H 0.055 0.945 32 H 0.097 0.903 33 H 0.153 0.847 34 H 0.054 0.946 35 H 0.027 0.973 36 H 0.073 0.927 37 H 0.094 0.906 38 H 0.109 0.891 39 H 0.096 0.904 40 H 0.076 0.924 41 H 0.105 0.895 42 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -0.995 -13.889 -6.249 15.263 hybrid contribution 1.062 -0.079 1.080 1.516 sum 0.067 -13.969 -5.170 14.895 Atomic orbital electron populations 1.23409 0.91992 1.07196 1.05412 1.86654 1.10093 1.12805 1.98055 1.23003 0.99803 0.91508 1.01618 0.90273 1.21708 1.00752 0.95172 0.95947 1.21326 0.96151 0.95816 1.01159 1.21462 0.96582 0.99412 0.96467 1.21567 0.95538 0.92594 0.92295 0.93999 1.60208 1.50598 1.08365 1.10048 1.21291 0.91578 0.91996 0.96107 1.19270 0.94514 0.98365 0.87789 1.21294 0.90036 1.03877 1.42777 0.94542 1.26672 1.08095 0.93880 0.93065 1.70761 1.03572 1.39286 1.43994 0.83086 0.71763 0.75657 0.76567 1.20229 1.21334 1.21271 1.22900 1.02527 0.96215 0.99805 1.22645 0.98801 0.93344 1.07487 1.21454 0.93121 0.94797 1.03230 0.90651 0.89736 0.86781 0.90313 0.91908 0.92168 0.93018 0.94541 0.90287 0.84679 0.94566 0.97296 0.92716 0.90603 0.89118 0.90432 0.92383 0.89514 0.91314 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.06 10.45 113.37 1.19 -0.88 16 2 S -0.30 -7.18 21.79 -56.49 -1.23 -8.41 16 3 C -0.03 -0.79 2.49 30.59 0.08 -0.71 16 4 H 0.08 2.41 7.41 -2.39 -0.02 2.39 16 5 C -0.10 -2.37 5.11 30.59 0.16 -2.22 16 6 C -0.11 -3.15 5.77 30.59 0.18 -2.98 16 7 C -0.10 -3.01 5.57 30.59 0.17 -2.84 16 8 C 0.09 2.71 2.83 44.94 0.13 2.83 16 9 H 0.04 1.23 7.71 -2.39 -0.02 1.21 16 10 N -0.66 -24.17 4.58 -491.48 -2.25 -26.42 16 11 C 0.12 5.07 5.33 86.30 0.46 5.53 16 12 C 0.00 0.06 1.07 -52.93 -0.06 0.01 16 13 C -0.54 -29.27 8.52 25.60 0.22 -29.05 16 14 H 0.04 2.03 7.82 -2.91 -0.02 2.00 16 15 C -0.02 -1.01 5.39 84.66 0.46 -0.55 16 16 N -0.94 -55.76 13.46 21.45 0.29 -55.47 16 17 Si 1.10 50.99 29.91 68.60 2.05 53.04 16 18 H -0.28 -12.02 7.11 99.48 0.71 -11.32 16 19 H -0.29 -13.02 7.11 99.48 0.71 -12.32 16 20 H -0.29 -12.99 7.11 99.48 0.71 -12.29 16 21 C -0.18 -7.34 9.93 30.62 0.30 -7.03 16 22 C -0.18 -8.45 8.97 30.62 0.27 -8.18 16 23 C -0.09 -2.16 4.58 30.61 0.14 -2.02 16 24 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 25 H 0.08 1.44 7.14 -2.39 -0.02 1.42 16 26 H 0.11 1.68 8.14 -2.39 -0.02 1.66 16 27 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 28 H 0.06 1.46 6.92 -2.39 -0.02 1.45 16 29 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 30 H 0.05 1.96 7.60 -2.39 -0.02 1.94 16 31 H 0.04 1.28 7.68 -2.38 -0.02 1.26 16 32 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 33 H 0.33 11.95 8.01 -89.69 -0.72 11.23 16 34 H 0.04 1.74 6.97 -2.39 -0.02 1.73 16 35 H 0.01 0.36 7.93 -2.38 -0.02 0.34 16 36 H 0.26 15.64 6.12 -92.71 -0.57 15.07 16 37 H 0.08 3.18 8.14 -2.39 -0.02 3.16 16 38 H 0.09 3.24 8.14 -2.39 -0.02 3.22 16 39 H 0.08 3.27 8.14 -2.39 -0.02 3.25 16 40 H 0.06 2.93 8.14 -2.39 -0.02 2.91 16 41 H 0.09 1.92 8.14 -2.38 -0.02 1.90 16 42 H 0.07 1.69 8.12 -2.39 -0.02 1.67 16 Total: -1.00 -59.75 337.94 3.00 -56.75 By element: Atomic # 1 Polarization: 28.14 SS G_CDS: 0.46 Total: 28.60 kcal Atomic # 6 Polarization: -51.77 SS G_CDS: 3.69 Total: -48.09 kcal Atomic # 7 Polarization: -79.93 SS G_CDS: -1.96 Total: -81.89 kcal Atomic # 14 Polarization: 50.99 SS G_CDS: 2.05 Total: 53.04 kcal Atomic # 16 Polarization: -7.18 SS G_CDS: -1.23 Total: -8.41 kcal Total: -59.75 3.00 -56.75 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000235162456.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.516 kcal (2) G-P(sol) polarization free energy of solvation -59.749 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.233 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.000 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.749 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.234 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds