Wall clock time and date at job start Mon Mar 30 2020 01:15:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81397 * 1 3 3 C 1.81405 * 103.00015 * 2 1 4 4 H 1.09001 * 109.47089 * 54.99739 * 3 2 1 5 5 C 1.53004 * 109.46809 * 295.00181 * 3 2 1 6 6 C 1.52998 * 109.47000 * 179.97438 * 5 3 2 7 7 C 1.53008 * 109.47019 * 59.99571 * 6 5 3 8 8 C 1.52995 * 109.47478 * 299.99936 * 7 6 5 9 9 H 1.09001 * 109.47097 * 300.00267 * 8 7 6 10 10 N 1.46893 * 109.47483 * 179.97438 * 8 7 6 11 11 C 1.46904 * 110.99903 * 84.99920 * 10 8 7 12 12 C 1.52999 * 109.47502 * 185.29146 * 11 10 8 13 13 C 1.50697 * 115.54930 * 65.04629 * 12 11 10 14 14 H 1.07993 * 120.00453 * 265.57737 * 13 12 11 15 15 C 1.37885 * 119.99710 * 85.57259 * 13 12 11 16 16 N 1.31517 * 119.99786 * 353.74753 * 15 13 12 17 17 Si 1.86796 * 119.99999 * 173.74377 * 15 13 12 18 18 H 1.48495 * 109.47388 * 0.02562 * 17 15 13 19 19 H 1.48500 * 109.46961 * 120.00188 * 17 15 13 20 20 H 1.48501 * 109.47182 * 240.00318 * 17 15 13 21 21 C 1.52998 * 117.49807 * 279.38275 * 12 11 10 22 22 C 1.52997 * 117.49938 * 210.72242 * 12 11 10 23 23 C 1.52991 * 109.47064 * 174.99949 * 3 2 1 24 24 H 1.09007 * 109.47158 * 299.99829 * 1 2 3 25 25 H 1.08997 * 109.47009 * 60.00064 * 1 2 3 26 26 H 1.09003 * 109.46945 * 180.02562 * 1 2 3 27 27 H 1.08990 * 109.47154 * 59.99968 * 5 3 2 28 28 H 1.09001 * 109.46933 * 299.99653 * 5 3 2 29 29 H 1.09000 * 109.47465 * 300.00470 * 6 5 3 30 30 H 1.08995 * 109.47525 * 179.97438 * 6 5 3 31 31 H 1.09005 * 109.46992 * 179.97438 * 7 6 5 32 32 H 1.09000 * 109.46879 * 60.00613 * 7 6 5 33 33 H 1.00898 * 111.00700 * 208.95568 * 10 8 7 34 34 H 1.09000 * 109.47462 * 305.29427 * 11 10 8 35 35 H 1.09006 * 109.46599 * 65.29349 * 11 10 8 36 36 H 0.96999 * 119.99426 * 179.97438 * 16 15 13 37 37 H 1.09007 * 117.50041 * 359.97438 * 21 12 11 38 38 H 1.09002 * 117.49860 * 145.01799 * 21 12 11 39 39 H 1.09001 * 117.49576 * 214.97756 * 22 12 11 40 40 H 1.08998 * 117.50015 * 0.02562 * 22 12 11 41 41 H 1.09001 * 109.47339 * 59.99943 * 23 3 2 42 42 H 1.09003 * 109.47697 * 299.99885 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7676 0.0000 4 1 1.7294 2.2542 0.8418 5 6 1.7427 2.4016 -1.3074 6 6 2.0863 3.8925 -1.3072 7 6 3.6012 4.0667 -1.1811 8 6 4.0805 3.4328 0.1263 9 1 3.5875 3.9191 0.9680 10 7 5.5349 3.5995 0.2470 11 6 5.8683 4.9054 0.8315 12 6 7.3863 5.0968 0.8198 13 6 8.0203 5.1811 -0.5447 14 1 8.4289 4.2942 -1.0060 15 6 8.0785 6.3905 -1.2043 16 7 7.4739 7.4441 -0.7003 17 14 9.0161 6.5325 -2.8137 18 1 9.6015 5.2134 -3.1635 19 1 8.0887 6.9632 -3.8905 20 1 10.1030 7.5336 -2.6667 21 6 8.1918 4.4233 1.9326 22 6 8.0003 5.9420 1.9376 23 6 3.7369 1.9412 0.1257 24 1 -0.3634 0.5138 0.8901 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 0.6636 2.2778 -1.3969 28 1 2.2353 1.9150 -2.1492 29 1 1.5935 4.3788 -0.4653 30 1 1.7452 4.3441 -2.2387 31 1 3.8460 5.1289 -1.1814 32 1 4.0941 3.5805 -2.0229 33 1 5.9417 2.8485 0.7841 34 1 5.3979 5.6959 0.2469 35 1 5.5047 4.9473 1.8583 36 1 7.5152 8.2950 -1.1641 37 1 7.6403 3.8442 2.6734 38 1 9.1805 4.0416 1.6779 39 1 8.8631 6.5588 1.6860 40 1 7.3230 6.3613 2.6815 41 1 4.2295 1.4546 -0.7161 42 1 4.0784 1.4895 1.0571 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000235218522.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:15:45 Heat of formation + Delta-G solvation = 2.484781 kcal Electronic energy + Delta-G solvation = -19010.979666 eV Core-core repulsion = 16309.825127 eV Total energy + Delta-G solvation = -2701.154539 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.151 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -38.69558 -36.67108 -33.74139 -31.78478 -30.76393 -29.50641 -28.46597 -25.56710 -24.19490 -22.59291 -21.49985 -20.92010 -19.67403 -18.87621 -16.50768 -16.08894 -15.22364 -14.88459 -14.51913 -14.41915 -14.28896 -14.05071 -13.63030 -13.51097 -13.30085 -12.93852 -12.42954 -12.30381 -11.87476 -11.77817 -11.43076 -11.21285 -11.02775 -10.91286 -10.68228 -10.47574 -10.42611 -10.38123 -10.25358 -10.07722 -9.65377 -9.36016 -8.74497 -8.32444 -8.00834 -7.80731 -7.50369 -5.91512 -3.92329 1.56401 2.46281 3.35794 3.43998 3.49149 4.46947 4.52596 4.61951 4.90822 4.92856 4.97636 5.14615 5.22754 5.37141 5.38929 5.43315 5.45835 5.50000 5.54096 5.58552 5.74138 5.95813 6.10466 6.13837 6.19805 6.24514 6.34582 6.37612 6.51625 6.61047 6.67066 6.77808 6.78543 6.96039 7.16235 7.51920 7.63808 8.00745 8.02361 8.21733 8.61132 9.07051 9.70551 11.18424 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.025019 B = 0.004441 C = 0.004105 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1118.866046 B = 6303.890285 C = 6818.759794 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 S -0.271 6.271 3 C -0.042 4.042 4 H 0.083 0.917 5 C -0.112 4.112 6 C -0.116 4.116 7 C -0.108 4.108 8 C 0.098 3.902 9 H 0.032 0.968 10 N -0.664 5.664 11 C 0.109 3.891 12 C 0.053 3.947 13 C -0.466 4.466 14 H 0.060 0.940 15 C 0.067 3.933 16 N -0.886 5.886 17 Si 0.887 3.113 18 H -0.273 1.273 19 H -0.286 1.286 20 H -0.287 1.287 21 C -0.216 4.216 22 C -0.159 4.159 23 C -0.099 4.099 24 H 0.073 0.927 25 H 0.076 0.924 26 H 0.097 0.903 27 H 0.057 0.943 28 H 0.076 0.924 29 H 0.057 0.943 30 H 0.065 0.935 31 H 0.070 0.930 32 H 0.071 0.929 33 H 0.330 0.670 34 H 0.077 0.923 35 H -0.008 1.008 36 H 0.256 0.744 37 H 0.059 0.941 38 H 0.076 0.924 39 H 0.081 0.919 40 H 0.059 0.941 41 H 0.081 0.919 42 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.662 -9.841 1.604 16.913 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.290 4.290 2 S -0.042 6.042 3 C -0.171 4.171 4 H 0.102 0.898 5 C -0.151 4.151 6 C -0.156 4.156 7 C -0.146 4.146 8 C -0.014 4.014 9 H 0.050 0.950 10 N -0.294 5.294 11 C -0.020 4.020 12 C 0.052 3.948 13 C -0.504 4.504 14 H 0.078 0.922 15 C -0.134 4.134 16 N -0.524 5.524 17 Si 0.715 3.285 18 H -0.198 1.198 19 H -0.213 1.213 20 H -0.213 1.213 21 C -0.254 4.254 22 C -0.197 4.197 23 C -0.138 4.138 24 H 0.092 0.908 25 H 0.095 0.905 26 H 0.116 0.884 27 H 0.075 0.925 28 H 0.095 0.905 29 H 0.076 0.924 30 H 0.084 0.916 31 H 0.088 0.912 32 H 0.089 0.911 33 H 0.148 0.852 34 H 0.095 0.905 35 H 0.010 0.990 36 H 0.065 0.935 37 H 0.077 0.923 38 H 0.095 0.905 39 H 0.099 0.901 40 H 0.077 0.923 41 H 0.099 0.901 42 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -12.958 -10.359 0.937 16.616 hybrid contribution -0.669 1.132 0.175 1.327 sum -13.628 -9.227 1.112 16.495 Atomic orbital electron populations 1.23362 0.94747 1.06109 1.04781 1.86904 1.06804 1.12553 1.97937 1.23179 1.00577 0.92167 1.01171 0.89828 1.21859 1.00147 0.96575 0.96501 1.21578 0.97491 0.94815 1.01704 1.21534 0.93129 1.01923 0.98004 1.21411 0.90131 0.92951 0.96914 0.94966 1.60297 1.07122 1.04800 1.57208 1.21585 0.97291 0.89885 0.93238 1.18828 0.88958 0.96889 0.90098 1.20345 1.36414 0.93883 0.99780 0.92228 1.24927 0.95372 0.95988 0.97159 1.70024 1.42723 1.00509 1.39180 0.86625 0.79817 0.77952 0.84117 1.19782 1.21268 1.21336 1.22994 1.02064 0.95665 1.04633 1.22514 1.03157 0.91401 1.02645 1.21538 0.91618 0.97389 1.03256 0.90751 0.90510 0.88407 0.92472 0.90548 0.92390 0.91615 0.91173 0.91051 0.85197 0.90500 0.98960 0.93470 0.92260 0.90545 0.90091 0.92254 0.90053 0.91503 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.99 10.45 101.05 1.06 0.07 16 2 S -0.27 -3.12 21.79 -107.50 -2.34 -5.46 16 3 C -0.04 -0.49 2.65 -26.73 -0.07 -0.56 16 4 H 0.08 0.95 8.14 -51.92 -0.42 0.53 16 5 C -0.11 -1.23 5.11 -26.73 -0.14 -1.36 16 6 C -0.12 -1.40 5.92 -26.73 -0.16 -1.56 16 7 C -0.11 -1.68 5.42 -26.73 -0.14 -1.82 16 8 C 0.10 1.54 2.49 -67.69 -0.17 1.37 16 9 H 0.03 0.52 7.86 -51.93 -0.41 0.11 16 10 N -0.66 -12.68 6.18 -106.69 -0.66 -13.34 16 11 C 0.11 2.39 5.29 -3.82 -0.02 2.37 16 12 C 0.05 1.29 1.55 -155.66 -0.24 1.05 16 13 C -0.47 -12.66 8.74 -34.44 -0.30 -12.96 16 14 H 0.06 1.66 7.82 -52.49 -0.41 1.25 16 15 C 0.07 1.84 5.39 -17.82 -0.10 1.74 16 16 N -0.89 -25.07 12.91 55.43 0.72 -24.35 16 17 Si 0.89 21.45 29.54 -169.99 -5.02 16.43 16 18 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 19 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 20 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 21 C -0.22 -4.71 9.96 -26.69 -0.27 -4.98 16 22 C -0.16 -3.76 9.40 -26.70 -0.25 -4.01 16 23 C -0.10 -1.33 4.48 -26.70 -0.12 -1.45 16 24 H 0.07 0.55 8.14 -51.92 -0.42 0.13 16 25 H 0.08 0.57 7.14 -51.93 -0.37 0.20 16 26 H 0.10 0.68 8.14 -51.92 -0.42 0.26 16 27 H 0.06 0.55 6.92 -51.93 -0.36 0.19 16 28 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 29 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 30 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.07 1.26 7.39 -51.93 -0.38 0.88 16 32 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 33 H 0.33 5.99 8.40 -39.29 -0.33 5.66 16 34 H 0.08 1.89 7.33 -51.93 -0.38 1.51 16 35 H -0.01 -0.16 8.09 -51.93 -0.42 -0.58 16 36 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 37 H 0.06 1.16 8.14 -51.92 -0.42 0.74 16 38 H 0.08 1.67 8.14 -51.93 -0.42 1.24 16 39 H 0.08 2.05 8.14 -51.93 -0.42 1.62 16 40 H 0.06 1.33 8.14 -51.93 -0.42 0.90 16 41 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 42 H 0.07 0.89 8.12 -51.93 -0.42 0.47 16 LS Contribution 343.69 15.07 5.18 5.18 Total: -1.00 -27.86 343.69 -10.74 -38.60 By element: Atomic # 1 Polarization: 12.74 SS G_CDS: -7.69 Total: 5.05 kcal Atomic # 6 Polarization: -21.19 SS G_CDS: -0.92 Total: -22.11 kcal Atomic # 7 Polarization: -37.75 SS G_CDS: 0.06 Total: -37.69 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Atomic # 16 Polarization: -3.12 SS G_CDS: -2.34 Total: -5.46 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -27.86 -10.74 -38.60 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000235218522.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.089 kcal (2) G-P(sol) polarization free energy of solvation -27.863 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.226 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.741 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.604 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.485 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds