Wall clock time and date at job start Mon Mar 30 2020 01:15:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81397 * 1 3 3 C 1.81405 * 103.00015 * 2 1 4 4 H 1.09001 * 109.47089 * 54.99739 * 3 2 1 5 5 C 1.53004 * 109.46809 * 295.00181 * 3 2 1 6 6 C 1.52998 * 109.47000 * 179.97438 * 5 3 2 7 7 C 1.53008 * 109.47019 * 59.99571 * 6 5 3 8 8 C 1.52995 * 109.47478 * 299.99936 * 7 6 5 9 9 H 1.09001 * 109.47097 * 300.00267 * 8 7 6 10 10 N 1.46893 * 109.47483 * 179.97438 * 8 7 6 11 11 C 1.46904 * 110.99903 * 84.99920 * 10 8 7 12 12 C 1.52999 * 109.47502 * 185.29146 * 11 10 8 13 13 C 1.50697 * 115.54930 * 65.04629 * 12 11 10 14 14 H 1.07993 * 120.00453 * 265.57737 * 13 12 11 15 15 C 1.37885 * 119.99710 * 85.57259 * 13 12 11 16 16 N 1.31517 * 119.99786 * 353.74753 * 15 13 12 17 17 Si 1.86796 * 119.99999 * 173.74377 * 15 13 12 18 18 H 1.48495 * 109.47388 * 0.02562 * 17 15 13 19 19 H 1.48500 * 109.46961 * 120.00188 * 17 15 13 20 20 H 1.48501 * 109.47182 * 240.00318 * 17 15 13 21 21 C 1.52998 * 117.49807 * 279.38275 * 12 11 10 22 22 C 1.52997 * 117.49938 * 210.72242 * 12 11 10 23 23 C 1.52991 * 109.47064 * 174.99949 * 3 2 1 24 24 H 1.09007 * 109.47158 * 299.99829 * 1 2 3 25 25 H 1.08997 * 109.47009 * 60.00064 * 1 2 3 26 26 H 1.09003 * 109.46945 * 180.02562 * 1 2 3 27 27 H 1.08990 * 109.47154 * 59.99968 * 5 3 2 28 28 H 1.09001 * 109.46933 * 299.99653 * 5 3 2 29 29 H 1.09000 * 109.47465 * 300.00470 * 6 5 3 30 30 H 1.08995 * 109.47525 * 179.97438 * 6 5 3 31 31 H 1.09005 * 109.46992 * 179.97438 * 7 6 5 32 32 H 1.09000 * 109.46879 * 60.00613 * 7 6 5 33 33 H 1.00898 * 111.00700 * 208.95568 * 10 8 7 34 34 H 1.09000 * 109.47462 * 305.29427 * 11 10 8 35 35 H 1.09006 * 109.46599 * 65.29349 * 11 10 8 36 36 H 0.96999 * 119.99426 * 179.97438 * 16 15 13 37 37 H 1.09007 * 117.50041 * 359.97438 * 21 12 11 38 38 H 1.09002 * 117.49860 * 145.01799 * 21 12 11 39 39 H 1.09001 * 117.49576 * 214.97756 * 22 12 11 40 40 H 1.08998 * 117.50015 * 0.02562 * 22 12 11 41 41 H 1.09001 * 109.47339 * 59.99943 * 23 3 2 42 42 H 1.09003 * 109.47697 * 299.99885 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7676 0.0000 4 1 1.7294 2.2542 0.8418 5 6 1.7427 2.4016 -1.3074 6 6 2.0863 3.8925 -1.3072 7 6 3.6012 4.0667 -1.1811 8 6 4.0805 3.4328 0.1263 9 1 3.5875 3.9191 0.9680 10 7 5.5349 3.5995 0.2470 11 6 5.8683 4.9054 0.8315 12 6 7.3863 5.0968 0.8198 13 6 8.0203 5.1811 -0.5447 14 1 8.4289 4.2942 -1.0060 15 6 8.0785 6.3905 -1.2043 16 7 7.4739 7.4441 -0.7003 17 14 9.0161 6.5325 -2.8137 18 1 9.6015 5.2134 -3.1635 19 1 8.0887 6.9632 -3.8905 20 1 10.1030 7.5336 -2.6667 21 6 8.1918 4.4233 1.9326 22 6 8.0003 5.9420 1.9376 23 6 3.7369 1.9412 0.1257 24 1 -0.3634 0.5138 0.8901 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 0.6636 2.2778 -1.3969 28 1 2.2353 1.9150 -2.1492 29 1 1.5935 4.3788 -0.4653 30 1 1.7452 4.3441 -2.2387 31 1 3.8460 5.1289 -1.1814 32 1 4.0941 3.5805 -2.0229 33 1 5.9417 2.8485 0.7841 34 1 5.3979 5.6959 0.2469 35 1 5.5047 4.9473 1.8583 36 1 7.5152 8.2950 -1.1641 37 1 7.6403 3.8442 2.6734 38 1 9.1805 4.0416 1.6779 39 1 8.8631 6.5588 1.6860 40 1 7.3230 6.3613 2.6815 41 1 4.2295 1.4546 -0.7161 42 1 4.0784 1.4895 1.0571 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000235218522.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:15:45 Heat of formation + Delta-G solvation = -11.897029 kcal Electronic energy + Delta-G solvation = -19011.603308 eV Core-core repulsion = 16309.825127 eV Total energy + Delta-G solvation = -2701.778181 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.151 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.93382 -38.40322 -35.16383 -33.86597 -31.84113 -30.52952 -29.40008 -27.58034 -25.84096 -23.69065 -22.98008 -22.44504 -21.01462 -20.61596 -18.02937 -17.47052 -16.70786 -16.29090 -16.12303 -15.77342 -15.39776 -15.28777 -14.92485 -14.75432 -14.37664 -14.21014 -13.67370 -13.50896 -13.42677 -13.12146 -12.87963 -12.78942 -12.61797 -12.42445 -12.33693 -12.18356 -12.01820 -11.63130 -11.49442 -11.41522 -11.14537 -10.71925 -10.61404 -10.35088 -9.89117 -9.04400 -8.67431 -8.02162 -6.07679 0.73689 1.41231 1.44442 1.54795 1.68264 2.48857 3.19077 3.28102 3.60928 3.65496 3.88311 4.00989 4.17024 4.23900 4.34242 4.38255 4.40135 4.43130 4.44615 4.48348 4.58010 4.61213 4.72932 4.81877 4.87860 4.93793 5.00860 5.03853 5.09864 5.15091 5.17438 5.26047 5.30512 5.35371 5.50017 5.65452 5.78111 5.90584 6.39806 6.54259 6.77868 6.95542 7.57294 9.07017 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.025019 B = 0.004441 C = 0.004105 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1118.866046 B = 6303.890285 C = 6818.759794 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 S -0.310 6.310 3 C -0.034 4.034 4 H 0.091 0.909 5 C -0.105 4.105 6 C -0.108 4.108 7 C -0.105 4.105 8 C 0.100 3.900 9 H 0.035 0.965 10 N -0.676 5.676 11 C 0.126 3.874 12 C 0.026 3.974 13 C -0.477 4.477 14 H 0.046 0.954 15 C 0.023 3.977 16 N -0.911 5.911 17 Si 0.942 3.058 18 H -0.271 1.271 19 H -0.285 1.285 20 H -0.284 1.284 21 C -0.189 4.189 22 C -0.166 4.166 23 C -0.089 4.089 24 H 0.084 0.916 25 H 0.087 0.913 26 H 0.110 0.890 27 H 0.081 0.919 28 H 0.068 0.932 29 H 0.067 0.933 30 H 0.075 0.925 31 H 0.037 0.963 32 H 0.055 0.945 33 H 0.337 0.663 34 H 0.043 0.957 35 H 0.004 0.996 36 H 0.255 0.745 37 H 0.088 0.912 38 H 0.075 0.925 39 H 0.056 0.944 40 H 0.070 0.930 41 H 0.069 0.931 42 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.262 -11.177 1.849 19.007 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.278 4.278 2 S -0.082 6.082 3 C -0.163 4.163 4 H 0.110 0.890 5 C -0.144 4.144 6 C -0.147 4.147 7 C -0.144 4.144 8 C -0.011 4.011 9 H 0.053 0.947 10 N -0.307 5.307 11 C -0.003 4.003 12 C 0.026 3.974 13 C -0.515 4.515 14 H 0.064 0.936 15 C -0.175 4.175 16 N -0.551 5.551 17 Si 0.769 3.231 18 H -0.195 1.195 19 H -0.211 1.211 20 H -0.210 1.210 21 C -0.226 4.226 22 C -0.205 4.205 23 C -0.128 4.128 24 H 0.103 0.897 25 H 0.106 0.894 26 H 0.129 0.871 27 H 0.099 0.901 28 H 0.087 0.913 29 H 0.085 0.915 30 H 0.094 0.906 31 H 0.056 0.944 32 H 0.073 0.927 33 H 0.155 0.845 34 H 0.062 0.938 35 H 0.021 0.979 36 H 0.064 0.936 37 H 0.106 0.894 38 H 0.093 0.907 39 H 0.075 0.925 40 H 0.089 0.911 41 H 0.087 0.913 42 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -14.556 -11.710 1.183 18.719 hybrid contribution -0.187 1.504 0.108 1.520 sum -14.743 -10.205 1.291 17.977 Atomic orbital electron populations 1.23440 0.91208 1.07356 1.05838 1.87063 1.10727 1.12361 1.98052 1.23047 0.98935 0.92496 1.01774 0.89038 1.21811 1.01523 0.95177 0.95873 1.21509 0.94492 0.96095 1.02649 1.21482 0.95919 0.99520 0.97433 1.21436 0.88041 0.94780 0.96840 0.94749 1.60196 1.09596 1.03721 1.57162 1.21200 0.95482 0.90396 0.93261 1.18942 0.90397 0.98651 0.89459 1.20545 1.36348 0.93392 1.01219 0.93577 1.25539 0.96212 0.95870 0.99926 1.70118 1.43798 1.00759 1.40375 0.85760 0.78675 0.77845 0.80857 1.19540 1.21126 1.20972 1.22976 1.01723 0.94435 1.03457 1.22430 1.02602 0.92482 1.02951 1.21382 0.93316 0.95170 1.02884 0.89700 0.89411 0.87095 0.90062 0.91301 0.91476 0.90628 0.94408 0.92651 0.84476 0.93849 0.97851 0.93600 0.89351 0.90663 0.92484 0.91143 0.91259 0.91206 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.43 10.45 113.37 1.18 -0.24 16 2 S -0.31 -6.50 21.79 -56.49 -1.23 -7.73 16 3 C -0.03 -0.71 2.65 30.59 0.08 -0.63 16 4 H 0.09 1.82 8.14 -2.39 -0.02 1.80 16 5 C -0.10 -2.06 5.11 30.59 0.16 -1.91 16 6 C -0.11 -2.45 5.92 30.60 0.18 -2.27 16 7 C -0.11 -3.32 5.42 30.60 0.17 -3.15 16 8 C 0.10 3.12 2.49 44.94 0.11 3.23 16 9 H 0.03 1.07 7.86 -2.39 -0.02 1.05 16 10 N -0.68 -25.86 6.18 -491.47 -3.04 -28.90 16 11 C 0.13 5.59 5.29 86.30 0.46 6.04 16 12 C 0.03 1.28 1.55 -52.93 -0.08 1.20 16 13 C -0.48 -26.30 8.74 25.60 0.22 -26.08 16 14 H 0.05 2.61 7.82 -2.91 -0.02 2.58 16 15 C 0.02 1.30 5.39 84.66 0.46 1.76 16 16 N -0.91 -52.63 12.91 21.45 0.28 -52.35 16 17 Si 0.94 44.67 29.54 68.60 2.03 46.69 16 18 H -0.27 -12.62 7.11 99.48 0.71 -11.92 16 19 H -0.29 -13.38 7.11 99.48 0.71 -12.67 16 20 H -0.28 -13.22 7.11 99.48 0.71 -12.51 16 21 C -0.19 -7.99 9.96 30.62 0.30 -7.68 16 22 C -0.17 -7.87 9.40 30.62 0.29 -7.58 16 23 C -0.09 -2.29 4.48 30.61 0.14 -2.15 16 24 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 25 H 0.09 0.97 7.14 -2.39 -0.02 0.96 16 26 H 0.11 1.18 8.14 -2.39 -0.02 1.16 16 27 H 0.08 1.26 6.92 -2.39 -0.02 1.24 16 28 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 29 H 0.07 1.42 8.14 -2.39 -0.02 1.41 16 30 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 31 H 0.04 1.41 7.39 -2.38 -0.02 1.39 16 32 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 33 H 0.34 11.98 8.40 -89.70 -0.75 11.23 16 34 H 0.04 2.20 7.33 -2.39 -0.02 2.19 16 35 H 0.00 0.15 8.09 -2.38 -0.02 0.13 16 36 H 0.26 14.16 8.31 -92.71 -0.77 13.39 16 37 H 0.09 3.23 8.14 -2.38 -0.02 3.21 16 38 H 0.07 3.19 8.14 -2.39 -0.02 3.17 16 39 H 0.06 2.93 8.14 -2.39 -0.02 2.91 16 40 H 0.07 3.12 8.14 -2.39 -0.02 3.10 16 41 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 42 H 0.07 1.76 8.12 -2.39 -0.02 1.74 16 Total: -1.00 -60.33 343.69 1.91 -58.41 By element: Atomic # 1 Polarization: 23.12 SS G_CDS: 0.21 Total: 23.34 kcal Atomic # 6 Polarization: -43.13 SS G_CDS: 3.67 Total: -39.46 kcal Atomic # 7 Polarization: -78.49 SS G_CDS: -2.76 Total: -81.25 kcal Atomic # 14 Polarization: 44.67 SS G_CDS: 2.03 Total: 46.69 kcal Atomic # 16 Polarization: -6.50 SS G_CDS: -1.23 Total: -7.73 kcal Total: -60.33 1.91 -58.41 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000235218522.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.518 kcal (2) G-P(sol) polarization free energy of solvation -60.328 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.810 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.913 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.415 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.897 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds