Wall clock time and date at job start Mon Mar 30 2020 00:45:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86796 * 120.00307 * 2 1 4 4 H 1.48498 * 109.47361 * 269.99498 * 3 2 1 5 5 H 1.48497 * 109.47059 * 29.99991 * 3 2 1 6 6 H 1.48507 * 109.47001 * 149.99789 * 3 2 1 7 7 C 1.38806 * 119.99640 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99918 * 180.02562 * 7 2 1 9 9 S 1.76193 * 120.00056 * 359.97438 * 7 2 1 10 10 C 1.81002 * 100.00049 * 180.02562 * 9 7 2 11 11 C 1.53000 * 109.47004 * 180.02562 * 10 9 7 12 12 C 1.53001 * 109.46886 * 180.02562 * 11 10 9 13 13 N 1.46902 * 109.46901 * 180.02562 * 12 11 10 14 14 C 1.47653 * 111.00095 * 49.00419 * 13 12 11 15 15 C 1.52596 * 111.72586 * 181.51220 * 14 13 12 16 16 C 1.53872 * 111.27036 * 306.36258 * 15 14 13 17 17 C 1.51812 * 106.90141 * 55.23693 * 16 15 14 18 18 H 1.09003 * 110.25461 * 57.04559 * 17 16 15 19 19 C 1.52568 * 116.25756 * 182.94208 * 17 16 15 20 20 C 1.54891 * 105.36848 * 145.87668 * 19 17 16 21 21 C 1.55307 * 106.37569 * 356.54954 * 20 19 17 22 22 C 1.45471 * 110.99661 * 169.99806 * 13 12 11 23 23 H 1.08999 * 110.16586 * 291.67132 * 22 13 12 24 24 H 0.97010 * 119.99946 * 0.02562 * 1 2 3 25 25 H 1.09002 * 109.47115 * 60.00094 * 10 9 7 26 26 H 1.09001 * 109.46925 * 300.00251 * 10 9 7 27 27 H 1.09001 * 109.47194 * 299.99731 * 11 10 9 28 28 H 1.08992 * 109.47399 * 59.99903 * 11 10 9 29 29 H 1.09001 * 109.47109 * 299.99380 * 12 11 10 30 30 H 1.09002 * 109.47508 * 59.99571 * 12 11 10 31 31 H 1.08999 * 109.03249 * 302.08806 * 14 13 12 32 32 H 1.08996 * 109.03184 * 60.93590 * 14 13 12 33 33 H 1.09001 * 109.11504 * 185.90092 * 15 14 13 34 34 H 1.08997 * 109.11499 * 66.82502 * 15 14 13 35 35 H 1.08998 * 109.96999 * 295.88273 * 16 15 14 36 36 H 1.08999 * 110.03695 * 174.62367 * 16 15 14 37 37 H 1.09003 * 110.26803 * 26.90610 * 19 17 16 38 38 H 1.09002 * 110.34574 * 264.89129 * 19 17 16 39 39 H 1.09009 * 110.07590 * 237.32051 * 20 19 17 40 40 H 1.09002 * 110.07952 * 115.77644 * 20 19 17 41 41 H 1.09003 * 110.71780 * 217.72259 * 21 20 19 42 42 H 1.08993 * 110.86991 * 94.52863 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4980 2.0463 -1.4000 5 1 1.4478 2.6526 0.7000 6 1 3.5479 1.4400 0.7001 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2022 0.0010 9 16 1.1291 -2.7280 0.0019 10 6 2.5156 -3.8915 0.0029 11 6 1.9790 -5.3243 0.0036 12 6 3.1510 -6.3078 0.0051 13 7 2.6357 -7.6835 0.0051 14 6 1.6043 -7.8623 -1.0363 15 6 1.0309 -9.2763 -1.0265 16 6 2.1464 -10.3318 -1.1233 17 6 3.1144 -10.0564 0.0132 18 1 2.5911 -10.0812 0.9691 19 6 4.3523 -10.9460 0.0761 20 6 5.4844 -10.0367 0.6151 21 6 4.8728 -8.6167 0.7623 22 6 3.7056 -8.6408 -0.2294 23 1 4.0769 -8.5470 -1.2499 24 1 -0.4850 0.8401 -0.0004 25 1 3.1242 -3.7307 0.8928 26 1 3.1243 -3.7322 -0.8872 27 1 1.3701 -5.4839 0.8935 28 1 1.3706 -5.4849 -0.8864 29 1 3.7602 -6.1485 -0.8846 30 1 3.7591 -6.1471 0.8954 31 1 0.7973 -7.1504 -0.8632 32 1 2.0470 -7.6651 -2.0125 33 1 0.3544 -9.3931 -1.8732 34 1 0.4739 -9.4293 -0.1021 35 1 2.6608 -10.2430 -2.0802 36 1 1.7247 -11.3315 -1.0191 37 1 4.6044 -11.3131 -0.9189 38 1 4.1840 -11.7821 0.7549 39 1 6.3150 -10.0151 -0.0906 40 1 5.8259 -10.3993 1.5847 41 1 5.5994 -7.8532 0.4841 42 1 4.5127 -8.4524 1.7778 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000245499486.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:45:34 Heat of formation + Delta-G solvation = -28.872854 kcal Electronic energy + Delta-G solvation = -18572.617358 eV Core-core repulsion = 15870.103050 eV Total energy + Delta-G solvation = -2702.514308 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.151 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.22820 -36.27784 -34.21603 -32.42650 -31.92981 -28.82543 -27.85307 -26.03641 -25.38701 -23.18983 -21.87467 -20.66700 -19.88955 -19.74663 -17.44665 -15.98672 -15.55033 -15.32035 -14.97590 -14.78761 -14.36251 -14.08100 -13.97275 -13.55205 -13.11965 -12.99837 -12.80191 -12.28419 -12.02469 -11.62289 -11.50928 -11.33464 -11.11875 -11.05415 -10.94742 -10.87579 -10.78753 -10.66844 -10.54869 -10.49904 -10.13873 -10.11962 -9.46669 -9.04154 -8.28911 -8.27323 -6.50561 -6.21078 -3.90987 3.22603 3.23508 3.30217 3.57086 3.91837 4.24144 4.28204 4.51550 4.64180 4.88103 5.03687 5.09263 5.14873 5.18182 5.25290 5.32020 5.35146 5.38926 5.43146 5.45619 5.57506 5.66019 5.70184 5.74941 5.76874 5.79611 5.83786 5.93446 5.97495 6.02364 6.05933 6.07387 6.18107 6.23509 6.33217 6.38847 6.62353 6.77539 7.11132 7.23817 7.62244 8.38427 9.25197 10.87144 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.038427 B = 0.003316 C = 0.003101 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 728.483459 B = 8442.240442 C = 9026.431249 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.870 5.870 2 C 0.070 3.930 3 Si 0.918 3.082 4 H -0.277 1.277 5 H -0.282 1.282 6 H -0.272 1.272 7 C -0.516 4.516 8 H 0.072 0.928 9 S -0.133 6.133 10 C -0.112 4.112 11 C -0.100 4.100 12 C 0.057 3.943 13 N -0.517 5.517 14 C 0.044 3.956 15 C -0.116 4.116 16 C -0.111 4.111 17 C -0.090 4.090 18 H 0.083 0.917 19 C -0.117 4.117 20 C -0.121 4.121 21 C -0.116 4.116 22 C 0.071 3.929 23 H 0.042 0.958 24 H 0.267 0.733 25 H 0.060 0.940 26 H 0.057 0.943 27 H 0.074 0.926 28 H 0.066 0.934 29 H 0.030 0.970 30 H 0.075 0.925 31 H 0.087 0.913 32 H 0.030 0.970 33 H 0.065 0.935 34 H 0.068 0.932 35 H 0.059 0.941 36 H 0.062 0.938 37 H 0.062 0.938 38 H 0.064 0.936 39 H 0.061 0.939 40 H 0.064 0.936 41 H 0.063 0.937 42 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.364 -21.483 -1.048 22.735 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.506 5.506 2 C -0.138 4.138 3 Si 0.745 3.255 4 H -0.203 1.203 5 H -0.208 1.208 6 H -0.197 1.197 7 C -0.664 4.664 8 H 0.090 0.910 9 S 0.095 5.905 10 C -0.261 4.261 11 C -0.138 4.138 12 C -0.072 4.072 13 N -0.241 5.241 14 C -0.083 4.083 15 C -0.154 4.154 16 C -0.148 4.148 17 C -0.108 4.108 18 H 0.101 0.899 19 C -0.155 4.155 20 C -0.159 4.159 21 C -0.154 4.154 22 C -0.038 4.038 23 H 0.060 0.940 24 H 0.077 0.923 25 H 0.079 0.921 26 H 0.076 0.924 27 H 0.092 0.908 28 H 0.085 0.915 29 H 0.048 0.952 30 H 0.094 0.906 31 H 0.105 0.895 32 H 0.048 0.952 33 H 0.084 0.916 34 H 0.087 0.913 35 H 0.077 0.923 36 H 0.081 0.919 37 H 0.080 0.920 38 H 0.082 0.918 39 H 0.080 0.920 40 H 0.083 0.917 41 H 0.082 0.918 42 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 5.851 -21.629 -0.565 22.414 hybrid contribution 2.275 1.560 -0.856 2.888 sum 8.126 -20.069 -1.421 21.699 Atomic orbital electron populations 1.70026 1.05917 1.27281 1.47331 1.25015 0.95081 0.99075 0.94647 0.86168 0.79463 0.81573 0.78337 1.20304 1.20753 1.19682 1.22695 0.94510 0.90824 1.58378 0.91002 1.84606 1.09640 0.99414 1.96842 1.23230 1.02798 0.97381 1.02708 1.21409 0.97123 0.92254 1.03044 1.22218 0.97232 0.87076 1.00632 1.62603 1.10995 1.03802 1.46667 1.22258 0.95903 0.97454 0.92694 1.21606 0.97672 0.93777 1.02343 1.21483 0.96658 0.98667 0.98007 1.21707 0.95394 0.94098 0.99650 0.89901 1.21928 0.94827 0.97794 1.00967 1.22439 0.97727 0.94806 1.00963 1.22181 0.96427 0.96596 1.00148 1.22342 0.91461 0.92708 0.97276 0.93969 0.92333 0.92107 0.92419 0.90757 0.91509 0.95166 0.90627 0.89523 0.95154 0.91591 0.91289 0.92263 0.91885 0.91968 0.91755 0.91983 0.91720 0.91839 0.90544 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.26 13.22 55.49 0.73 -25.52 16 2 C 0.07 2.03 5.49 -17.43 -0.10 1.94 16 3 Si 0.92 21.75 29.55 -169.99 -5.02 16.73 16 4 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 5 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 6 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 7 C -0.52 -15.01 9.50 30.94 0.29 -14.72 16 8 H 0.07 2.03 7.80 -52.48 -0.41 1.62 16 9 S -0.13 -3.54 21.44 -107.50 -2.30 -5.85 16 10 C -0.11 -2.31 5.67 37.16 0.21 -2.10 16 11 C -0.10 -1.68 4.59 -26.73 -0.12 -1.80 16 12 C 0.06 0.82 4.83 -3.82 -0.02 0.80 16 13 N -0.52 -6.65 4.85 -225.79 -1.10 -7.75 16 14 C 0.04 0.54 4.73 -3.62 -0.02 0.52 16 15 C -0.12 -1.17 5.99 -26.48 -0.16 -1.32 16 16 C -0.11 -1.00 5.70 -26.88 -0.15 -1.16 16 17 C -0.09 -0.87 2.43 -90.22 -0.22 -1.09 16 18 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 19 C -0.12 -0.96 6.50 -25.96 -0.17 -1.12 16 20 C -0.12 -1.01 6.87 -24.51 -0.17 -1.17 16 21 C -0.12 -1.17 5.81 -25.42 -0.15 -1.32 16 22 C 0.07 0.80 1.86 -67.17 -0.12 0.67 16 23 H 0.04 0.50 8.00 -51.93 -0.42 0.09 16 24 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 25 H 0.06 1.25 8.14 -51.92 -0.42 0.83 16 26 H 0.06 1.18 8.14 -51.92 -0.42 0.76 16 27 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 28 H 0.07 1.13 6.26 -51.93 -0.33 0.80 16 29 H 0.03 0.43 8.07 -51.93 -0.42 0.01 16 30 H 0.08 1.06 7.78 -51.93 -0.40 0.66 16 31 H 0.09 1.14 6.04 -51.93 -0.31 0.82 16 32 H 0.03 0.38 8.10 -51.93 -0.42 -0.04 16 33 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.06 0.54 8.10 -51.93 -0.42 0.12 16 36 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.06 0.48 8.06 -51.93 -0.42 0.06 16 38 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 39 H 0.06 0.48 8.14 -51.92 -0.42 0.06 16 40 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 41 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 42 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 LS Contribution 334.59 15.07 5.04 5.04 Total: -1.00 -30.44 334.59 -11.29 -41.73 By element: Atomic # 1 Polarization: 5.25 SS G_CDS: -7.75 Total: -2.51 kcal Atomic # 6 Polarization: -20.99 SS G_CDS: -0.89 Total: -21.87 kcal Atomic # 7 Polarization: -32.91 SS G_CDS: -0.36 Total: -33.27 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.73 kcal Atomic # 16 Polarization: -3.54 SS G_CDS: -2.30 Total: -5.85 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -30.44 -11.29 -41.73 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000245499486.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.862 kcal (2) G-P(sol) polarization free energy of solvation -30.442 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.580 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.292 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.735 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.873 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds