Wall clock time and date at job start Mon Mar 30 2020 00:45:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86796 * 120.00307 * 2 1 4 4 H 1.48498 * 109.47361 * 269.99498 * 3 2 1 5 5 H 1.48497 * 109.47059 * 29.99991 * 3 2 1 6 6 H 1.48507 * 109.47001 * 149.99789 * 3 2 1 7 7 C 1.38806 * 119.99640 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99918 * 180.02562 * 7 2 1 9 9 S 1.76193 * 120.00056 * 359.97438 * 7 2 1 10 10 C 1.81002 * 100.00049 * 180.02562 * 9 7 2 11 11 C 1.53000 * 109.47004 * 180.02562 * 10 9 7 12 12 C 1.53001 * 109.46886 * 180.02562 * 11 10 9 13 13 N 1.46902 * 109.46901 * 180.02562 * 12 11 10 14 14 C 1.47653 * 111.00095 * 49.00419 * 13 12 11 15 15 C 1.52596 * 111.72586 * 181.51220 * 14 13 12 16 16 C 1.53872 * 111.27036 * 306.36258 * 15 14 13 17 17 C 1.51812 * 106.90141 * 55.23693 * 16 15 14 18 18 H 1.09003 * 110.25461 * 57.04559 * 17 16 15 19 19 C 1.52568 * 116.25756 * 182.94208 * 17 16 15 20 20 C 1.54891 * 105.36848 * 145.87668 * 19 17 16 21 21 C 1.55307 * 106.37569 * 356.54954 * 20 19 17 22 22 C 1.45471 * 110.99661 * 169.99806 * 13 12 11 23 23 H 1.08999 * 110.16586 * 291.67132 * 22 13 12 24 24 H 0.97010 * 119.99946 * 0.02562 * 1 2 3 25 25 H 1.09002 * 109.47115 * 60.00094 * 10 9 7 26 26 H 1.09001 * 109.46925 * 300.00251 * 10 9 7 27 27 H 1.09001 * 109.47194 * 299.99731 * 11 10 9 28 28 H 1.08992 * 109.47399 * 59.99903 * 11 10 9 29 29 H 1.09001 * 109.47109 * 299.99380 * 12 11 10 30 30 H 1.09002 * 109.47508 * 59.99571 * 12 11 10 31 31 H 1.08999 * 109.03249 * 302.08806 * 14 13 12 32 32 H 1.08996 * 109.03184 * 60.93590 * 14 13 12 33 33 H 1.09001 * 109.11504 * 185.90092 * 15 14 13 34 34 H 1.08997 * 109.11499 * 66.82502 * 15 14 13 35 35 H 1.08998 * 109.96999 * 295.88273 * 16 15 14 36 36 H 1.08999 * 110.03695 * 174.62367 * 16 15 14 37 37 H 1.09003 * 110.26803 * 26.90610 * 19 17 16 38 38 H 1.09002 * 110.34574 * 264.89129 * 19 17 16 39 39 H 1.09009 * 110.07590 * 237.32051 * 20 19 17 40 40 H 1.09002 * 110.07952 * 115.77644 * 20 19 17 41 41 H 1.09003 * 110.71780 * 217.72259 * 21 20 19 42 42 H 1.08993 * 110.86991 * 94.52863 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4980 2.0463 -1.4000 5 1 1.4478 2.6526 0.7000 6 1 3.5479 1.4400 0.7001 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2022 0.0010 9 16 1.1291 -2.7280 0.0019 10 6 2.5156 -3.8915 0.0029 11 6 1.9790 -5.3243 0.0036 12 6 3.1510 -6.3078 0.0051 13 7 2.6357 -7.6835 0.0051 14 6 1.6043 -7.8623 -1.0363 15 6 1.0309 -9.2763 -1.0265 16 6 2.1464 -10.3318 -1.1233 17 6 3.1144 -10.0564 0.0132 18 1 2.5911 -10.0812 0.9691 19 6 4.3523 -10.9460 0.0761 20 6 5.4844 -10.0367 0.6151 21 6 4.8728 -8.6167 0.7623 22 6 3.7056 -8.6408 -0.2294 23 1 4.0769 -8.5470 -1.2499 24 1 -0.4850 0.8401 -0.0004 25 1 3.1242 -3.7307 0.8928 26 1 3.1243 -3.7322 -0.8872 27 1 1.3701 -5.4839 0.8935 28 1 1.3706 -5.4849 -0.8864 29 1 3.7602 -6.1485 -0.8846 30 1 3.7591 -6.1471 0.8954 31 1 0.7973 -7.1504 -0.8632 32 1 2.0470 -7.6651 -2.0125 33 1 0.3544 -9.3931 -1.8732 34 1 0.4739 -9.4293 -0.1021 35 1 2.6608 -10.2430 -2.0802 36 1 1.7247 -11.3315 -1.0191 37 1 4.6044 -11.3131 -0.9189 38 1 4.1840 -11.7821 0.7549 39 1 6.3150 -10.0151 -0.0906 40 1 5.8259 -10.3993 1.5847 41 1 5.5994 -7.8532 0.4841 42 1 4.5127 -8.4524 1.7778 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000245499486.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:45:34 Heat of formation + Delta-G solvation = -45.719965 kcal Electronic energy + Delta-G solvation = -18573.347903 eV Core-core repulsion = 15870.103050 eV Total energy + Delta-G solvation = -2703.244854 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.151 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.10319 -37.28192 -35.16101 -34.61847 -33.16731 -29.63253 -28.74274 -27.85764 -26.91965 -24.32345 -22.79083 -21.73610 -20.80041 -20.58716 -19.55591 -16.98492 -16.90764 -16.56160 -16.50187 -16.08296 -15.64414 -15.17602 -15.14256 -14.69561 -14.36699 -14.09188 -13.78902 -13.54699 -13.28289 -13.23107 -12.93249 -12.80809 -12.56623 -12.39724 -12.13805 -12.03410 -11.76545 -11.68644 -11.60534 -11.48129 -11.22224 -11.18133 -11.13518 -10.86708 -10.33202 -9.31882 -8.68452 -8.38589 -6.15200 1.30385 1.38653 1.47892 1.72549 2.27007 2.90066 2.95581 3.30448 3.48671 3.74441 3.87441 3.96531 4.06152 4.13409 4.23855 4.32044 4.35540 4.44170 4.45525 4.50345 4.56405 4.61915 4.70260 4.72052 4.80371 4.90320 4.92358 4.99747 5.06622 5.12689 5.15841 5.22262 5.23725 5.24594 5.29957 5.35201 5.38222 5.44594 5.60400 6.07620 6.16785 6.24639 7.03423 8.70935 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.038427 B = 0.003316 C = 0.003101 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 728.483459 B = 8442.240442 C = 9026.431249 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C 0.015 3.985 3 Si 0.995 3.005 4 H -0.267 1.267 5 H -0.273 1.273 6 H -0.263 1.263 7 C -0.540 4.540 8 H 0.072 0.928 9 S -0.196 6.196 10 C -0.087 4.087 11 C -0.086 4.086 12 C 0.068 3.932 13 N -0.523 5.523 14 C 0.042 3.958 15 C -0.114 4.114 16 C -0.107 4.107 17 C -0.085 4.085 18 H 0.071 0.929 19 C -0.113 4.113 20 C -0.118 4.118 21 C -0.117 4.117 22 C 0.066 3.934 23 H 0.037 0.963 24 H 0.272 0.728 25 H 0.062 0.938 26 H 0.059 0.941 27 H 0.066 0.934 28 H 0.065 0.935 29 H 0.031 0.969 30 H 0.078 0.922 31 H 0.071 0.929 32 H 0.026 0.974 33 H 0.078 0.922 34 H 0.065 0.935 35 H 0.061 0.939 36 H 0.079 0.921 37 H 0.070 0.930 38 H 0.075 0.925 39 H 0.069 0.931 40 H 0.073 0.927 41 H 0.060 0.940 42 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.835 -22.523 -1.221 24.225 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.190 4.190 3 Si 0.817 3.183 4 H -0.192 1.192 5 H -0.198 1.198 6 H -0.187 1.187 7 C -0.688 4.688 8 H 0.090 0.910 9 S 0.033 5.967 10 C -0.237 4.237 11 C -0.125 4.125 12 C -0.061 4.061 13 N -0.247 5.247 14 C -0.085 4.085 15 C -0.151 4.151 16 C -0.144 4.144 17 C -0.104 4.104 18 H 0.090 0.910 19 C -0.151 4.151 20 C -0.156 4.156 21 C -0.155 4.155 22 C -0.043 4.043 23 H 0.055 0.945 24 H 0.081 0.919 25 H 0.081 0.919 26 H 0.078 0.922 27 H 0.085 0.915 28 H 0.084 0.916 29 H 0.049 0.951 30 H 0.097 0.903 31 H 0.090 0.910 32 H 0.045 0.955 33 H 0.096 0.904 34 H 0.083 0.917 35 H 0.080 0.920 36 H 0.098 0.902 37 H 0.088 0.912 38 H 0.094 0.906 39 H 0.087 0.913 40 H 0.092 0.908 41 H 0.079 0.921 42 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 7.322 -22.689 -0.740 23.853 hybrid contribution 1.805 1.812 -0.801 2.680 sum 9.128 -20.878 -1.541 22.838 Atomic orbital electron populations 1.70156 1.07699 1.28584 1.47925 1.26084 0.96057 1.03143 0.93704 0.85002 0.78176 0.76282 0.78862 1.19228 1.19815 1.18715 1.23043 0.94722 0.92016 1.58976 0.90983 1.84616 1.13963 1.01128 1.97030 1.23151 1.00181 0.97546 1.02790 1.21279 0.97995 0.90575 1.02634 1.22026 0.95778 0.87466 1.00822 1.62628 1.11807 1.03141 1.47104 1.22289 0.95296 0.98688 0.92248 1.21593 0.98171 0.92665 1.02700 1.21473 0.96115 0.99033 0.97827 1.21692 0.96045 0.93353 0.99295 0.91006 1.21922 0.93717 0.97702 1.01766 1.22433 0.97896 0.93465 1.01772 1.22195 0.96052 0.97955 0.99269 1.22447 0.91467 0.93106 0.97249 0.94507 0.91920 0.91913 0.92206 0.91523 0.91621 0.95079 0.90329 0.91015 0.95523 0.90384 0.91669 0.92020 0.90244 0.91164 0.90605 0.91255 0.90795 0.92100 0.91392 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -55.45 13.22 21.65 0.29 -55.16 16 2 C 0.02 0.87 5.49 84.86 0.47 1.33 16 3 Si 1.00 44.42 29.55 68.60 2.03 46.44 16 4 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 5 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 6 H -0.26 -11.24 7.11 99.48 0.71 -10.53 16 7 C -0.54 -31.79 9.50 67.96 0.65 -31.14 16 8 H 0.07 4.09 7.80 -2.91 -0.02 4.07 16 9 S -0.20 -10.69 21.44 -56.49 -1.21 -11.90 16 10 C -0.09 -3.63 5.67 71.98 0.41 -3.22 16 11 C -0.09 -2.92 4.59 30.59 0.14 -2.78 16 12 C 0.07 1.91 4.83 86.30 0.42 2.33 16 13 N -0.52 -13.13 4.85 -868.25 -4.21 -17.35 16 14 C 0.04 1.01 4.73 86.02 0.41 1.42 16 15 C -0.11 -2.14 5.99 30.75 0.18 -1.95 16 16 C -0.11 -1.72 5.70 30.50 0.17 -1.54 16 17 C -0.08 -1.49 2.43 -10.53 -0.03 -1.51 16 18 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 19 C -0.11 -1.55 6.50 31.10 0.20 -1.35 16 20 C -0.12 -1.69 6.87 32.03 0.22 -1.47 16 21 C -0.12 -2.21 5.81 31.45 0.18 -2.02 16 22 C 0.07 1.39 1.86 46.04 0.09 1.48 16 23 H 0.04 0.83 8.00 -2.39 -0.02 0.81 16 24 H 0.27 15.37 8.31 -92.70 -0.77 14.60 16 25 H 0.06 2.57 8.14 -2.39 -0.02 2.55 16 26 H 0.06 2.45 8.14 -2.39 -0.02 2.43 16 27 H 0.07 2.37 8.14 -2.39 -0.02 2.35 16 28 H 0.07 2.24 6.26 -2.39 -0.01 2.23 16 29 H 0.03 0.87 8.07 -2.39 -0.02 0.85 16 30 H 0.08 2.15 7.78 -2.39 -0.02 2.13 16 31 H 0.07 1.90 6.04 -2.39 -0.01 1.89 16 32 H 0.03 0.65 8.10 -2.39 -0.02 0.63 16 33 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 34 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 35 H 0.06 0.98 8.10 -2.39 -0.02 0.96 16 36 H 0.08 1.04 8.14 -2.39 -0.02 1.03 16 37 H 0.07 0.87 8.06 -2.39 -0.02 0.85 16 38 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 39 H 0.07 0.91 8.14 -2.38 -0.02 0.89 16 40 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 41 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 42 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 Total: -1.00 -65.49 334.59 1.35 -64.14 By element: Atomic # 1 Polarization: 13.30 SS G_CDS: 0.95 Total: 14.25 kcal Atomic # 6 Polarization: -43.93 SS G_CDS: 3.51 Total: -40.43 kcal Atomic # 7 Polarization: -68.58 SS G_CDS: -3.93 Total: -72.51 kcal Atomic # 14 Polarization: 44.42 SS G_CDS: 2.03 Total: 46.44 kcal Atomic # 16 Polarization: -10.69 SS G_CDS: -1.21 Total: -11.90 kcal Total: -65.49 1.35 -64.14 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000245499486.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.421 kcal (2) G-P(sol) polarization free energy of solvation -65.487 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.066 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.346 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.141 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.720 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds