Wall clock time and date at job start Mon Mar 30 2020 00:45:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86800 * 119.99987 * 2 1 4 4 H 1.48501 * 109.46831 * 0.02562 * 3 2 1 5 5 H 1.48495 * 109.47434 * 120.00068 * 3 2 1 6 6 H 1.48496 * 109.47534 * 240.00174 * 3 2 1 7 7 C 1.38799 * 120.00348 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99890 * 179.97438 * 7 2 1 9 9 S 1.76198 * 119.99714 * 0.02562 * 7 2 1 10 10 C 1.80998 * 99.99926 * 179.97438 * 9 7 2 11 11 C 1.53002 * 109.47403 * 179.97438 * 10 9 7 12 12 C 1.52999 * 109.47267 * 179.97438 * 11 10 9 13 13 N 1.46904 * 109.47086 * 183.53175 * 12 11 10 14 14 C 1.45416 * 110.99845 * 295.16116 * 13 12 11 15 15 C 1.52870 * 110.41263 * 183.79557 * 14 13 12 16 16 C 1.52958 * 108.18802 * 60.81686 * 15 14 13 17 17 C 1.53063 * 109.56506 * 296.74024 * 16 15 14 18 18 H 1.08995 * 110.22757 * 285.71998 * 17 16 15 19 19 C 1.54541 * 107.33386 * 165.60887 * 17 16 15 20 20 C 1.53750 * 107.11749 * 242.17646 * 19 17 16 21 21 C 1.54338 * 105.92701 * 16.72792 * 20 19 17 22 22 C 1.42788 * 110.99982 * 161.83237 * 13 12 11 23 23 H 1.09003 * 105.72204 * 281.70480 * 22 13 12 24 24 H 0.97005 * 120.00557 * 359.97438 * 1 2 3 25 25 H 1.09004 * 109.47568 * 300.00090 * 10 9 7 26 26 H 1.08999 * 109.47439 * 59.99924 * 10 9 7 27 27 H 1.08998 * 109.47250 * 299.99961 * 11 10 9 28 28 H 1.09000 * 109.46695 * 60.00196 * 11 10 9 29 29 H 1.09000 * 109.47624 * 303.53336 * 12 11 10 30 30 H 1.09006 * 109.46832 * 63.53328 * 12 11 10 31 31 H 1.09007 * 109.30833 * 304.08097 * 14 13 12 32 32 H 1.08992 * 109.31479 * 63.68901 * 14 13 12 33 33 H 1.09002 * 109.71566 * 180.48844 * 15 14 13 34 34 H 1.08996 * 109.71816 * 301.13880 * 15 14 13 35 35 H 1.08994 * 109.45845 * 56.77509 * 16 15 14 36 36 H 1.09003 * 109.44997 * 176.71607 * 16 15 14 37 37 H 1.09006 * 109.90737 * 1.54299 * 19 17 16 38 38 H 1.09001 * 109.90872 * 122.61656 * 19 17 16 39 39 H 1.09000 * 110.16067 * 135.84292 * 20 19 17 40 40 H 1.08998 * 110.15551 * 257.61573 * 20 19 17 41 41 H 1.08992 * 110.50189 * 89.88294 * 21 20 19 42 42 H 1.09000 * 110.49907 * 212.56701 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 1.2851 2.7464 0.0006 5 1 3.1040 1.6965 1.2124 6 1 3.1039 1.6965 -1.2125 7 6 2.0103 -1.2020 -0.0005 8 1 3.0903 -1.2019 -0.0010 9 16 1.1293 -2.7279 -0.0019 10 6 2.5159 -3.8913 -0.0029 11 6 1.9794 -5.3242 -0.0036 12 6 3.1515 -6.3076 -0.0051 13 7 2.6380 -7.6813 -0.0910 14 6 1.8678 -8.0248 1.0936 15 6 1.4196 -9.4850 1.0333 16 6 2.6688 -10.3660 0.9794 17 6 3.4470 -10.0739 -0.3059 18 1 2.9361 -10.5116 -1.1635 19 6 4.8522 -10.6965 -0.1450 20 6 5.8678 -9.5439 -0.2083 21 6 5.0569 -8.2516 0.0249 22 6 3.6610 -8.5846 -0.5110 23 1 3.7489 -8.4507 -1.5892 24 1 -0.4851 0.8400 0.0004 25 1 3.1246 -3.7305 -0.8928 26 1 3.1245 -3.7321 0.8871 27 1 1.3711 -5.4849 0.8865 28 1 1.3706 -5.4838 -0.8935 29 1 3.7942 -6.1057 -0.8620 30 1 3.7249 -6.1909 0.9146 31 1 2.4834 -7.8729 1.9803 32 1 0.9889 -7.3828 1.1508 33 1 0.8365 -9.7277 1.9217 34 1 0.8158 -9.6478 0.1406 35 1 3.3001 -10.1540 1.8422 36 1 2.3739 -11.4153 0.9947 37 1 4.9256 -11.2034 0.8173 38 1 5.0392 -11.4045 -0.9524 39 1 6.6192 -9.6620 0.5724 40 1 6.3443 -9.5167 -1.1883 41 1 5.0115 -8.0161 1.0881 42 1 5.4920 -7.4222 -0.5326 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000245499487.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:45:36 Heat of formation + Delta-G solvation = -31.271590 kcal Electronic energy + Delta-G solvation = -18637.716893 eV Core-core repulsion = 15935.098568 eV Total energy + Delta-G solvation = -2702.618325 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.151 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.37838 -36.18983 -34.26253 -32.42275 -32.09729 -29.14511 -27.83340 -26.07550 -25.38855 -23.28331 -22.19158 -21.32626 -20.00145 -18.44335 -17.43717 -16.58244 -15.82567 -15.21117 -14.96106 -14.77507 -14.60733 -14.03746 -13.77395 -13.54226 -13.14284 -12.84080 -12.76749 -12.55514 -11.77056 -11.69178 -11.64940 -11.40195 -11.26068 -11.12721 -11.02664 -10.85565 -10.79104 -10.68014 -10.58069 -10.40540 -10.21625 -10.08149 -9.48687 -9.02113 -8.26062 -7.96096 -6.48600 -6.19447 -3.89302 3.23821 3.25248 3.29736 3.57035 3.92286 4.26023 4.32633 4.43733 4.55774 4.86852 4.92864 4.99412 5.12914 5.16293 5.31347 5.35988 5.38825 5.40022 5.43044 5.48847 5.55541 5.66652 5.69831 5.71117 5.75800 5.81455 5.84382 5.90336 5.94087 5.99224 6.03125 6.11476 6.13798 6.22536 6.31257 6.42944 6.66711 6.82976 7.25104 7.55775 7.63277 8.39590 9.26590 10.88709 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.038667 B = 0.003338 C = 0.003131 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 723.960316 B = 8387.079252 C = 8939.875250 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.870 5.870 2 C 0.071 3.929 3 Si 0.918 3.082 4 H -0.283 1.283 5 H -0.274 1.274 6 H -0.274 1.274 7 C -0.517 4.517 8 H 0.071 0.929 9 S -0.132 6.132 10 C -0.112 4.112 11 C -0.095 4.095 12 C 0.074 3.926 13 N -0.552 5.552 14 C 0.069 3.931 15 C -0.122 4.122 16 C -0.115 4.115 17 C -0.082 4.082 18 H 0.078 0.922 19 C -0.121 4.121 20 C -0.121 4.121 21 C -0.153 4.153 22 C 0.109 3.891 23 H 0.059 0.941 24 H 0.267 0.733 25 H 0.059 0.941 26 H 0.057 0.943 27 H 0.064 0.936 28 H 0.073 0.927 29 H 0.071 0.929 30 H 0.033 0.967 31 H 0.026 0.974 32 H 0.080 0.920 33 H 0.067 0.933 34 H 0.071 0.929 35 H 0.059 0.941 36 H 0.061 0.939 37 H 0.064 0.936 38 H 0.063 0.937 39 H 0.062 0.938 40 H 0.064 0.936 41 H 0.061 0.939 42 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.151 -21.436 0.979 22.954 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.506 5.506 2 C -0.138 4.138 3 Si 0.744 3.256 4 H -0.208 1.208 5 H -0.200 1.200 6 H -0.199 1.199 7 C -0.665 4.665 8 H 0.089 0.911 9 S 0.096 5.904 10 C -0.261 4.261 11 C -0.134 4.134 12 C -0.054 4.054 13 N -0.275 5.275 14 C -0.058 4.058 15 C -0.160 4.160 16 C -0.152 4.152 17 C -0.100 4.100 18 H 0.097 0.903 19 C -0.158 4.158 20 C -0.159 4.159 21 C -0.192 4.192 22 C -0.001 4.001 23 H 0.077 0.923 24 H 0.077 0.923 25 H 0.078 0.922 26 H 0.076 0.924 27 H 0.082 0.918 28 H 0.092 0.908 29 H 0.090 0.910 30 H 0.051 0.949 31 H 0.044 0.956 32 H 0.099 0.901 33 H 0.086 0.914 34 H 0.090 0.910 35 H 0.078 0.922 36 H 0.080 0.920 37 H 0.083 0.917 38 H 0.081 0.919 39 H 0.080 0.920 40 H 0.082 0.918 41 H 0.079 0.921 42 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 6.551 -21.539 0.643 22.522 hybrid contribution 2.516 1.350 0.615 2.921 sum 9.068 -20.188 1.258 22.167 Atomic orbital electron populations 1.70011 1.05913 1.27386 1.47273 1.25006 0.95067 0.99040 0.94657 0.86235 0.79246 0.81286 0.78829 1.20829 1.19975 1.19938 1.22660 0.94485 0.90891 1.58457 0.91065 1.84618 1.09634 0.99317 1.96837 1.23229 1.02780 0.97483 1.02626 1.21313 0.97132 0.91879 1.03062 1.22057 0.96908 0.86086 1.00352 1.58311 1.28434 1.02412 1.38323 1.21651 0.97674 0.96383 0.90088 1.21592 0.97459 0.94547 1.02380 1.21680 0.96866 0.99433 0.97271 1.21438 0.95921 0.94271 0.98414 0.90333 1.22327 0.94006 0.97772 1.01743 1.22034 0.97687 0.94573 1.01579 1.22773 0.97050 0.97910 1.01494 1.20476 0.88256 0.91344 1.00015 0.92276 0.92281 0.92199 0.92436 0.91754 0.90793 0.91020 0.94853 0.95595 0.90132 0.91394 0.90990 0.92221 0.92018 0.91701 0.91854 0.91958 0.91764 0.92072 0.91209 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.32 13.22 55.49 0.73 -25.58 16 2 C 0.07 2.05 5.49 -17.43 -0.10 1.95 16 3 Si 0.92 21.76 29.55 -169.99 -5.02 16.74 16 4 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 5 H -0.27 -6.37 7.11 56.52 0.40 -5.96 16 6 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 7 C -0.52 -15.05 9.50 30.94 0.29 -14.76 16 8 H 0.07 2.01 7.80 -52.49 -0.41 1.60 16 9 S -0.13 -3.53 21.44 -107.50 -2.30 -5.83 16 10 C -0.11 -2.31 5.67 37.16 0.21 -2.10 16 11 C -0.10 -1.61 5.00 -26.73 -0.13 -1.74 16 12 C 0.07 1.04 3.93 -3.82 -0.02 1.03 16 13 N -0.55 -7.06 4.33 -231.69 -1.00 -8.07 16 14 C 0.07 0.83 5.23 -4.69 -0.02 0.80 16 15 C -0.12 -1.20 6.11 -26.82 -0.16 -1.37 16 16 C -0.11 -1.02 4.98 -26.72 -0.13 -1.16 16 17 C -0.08 -0.76 3.20 -90.36 -0.29 -1.05 16 18 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 19 C -0.12 -0.96 6.38 -25.53 -0.16 -1.13 16 20 C -0.12 -1.03 6.79 -25.64 -0.17 -1.20 16 21 C -0.15 -1.58 5.09 -25.93 -0.13 -1.71 16 22 C 0.11 1.21 2.41 -70.37 -0.17 1.04 16 23 H 0.06 0.70 8.05 -51.93 -0.42 0.29 16 24 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 25 H 0.06 1.23 8.14 -51.91 -0.42 0.80 16 26 H 0.06 1.18 8.14 -51.92 -0.42 0.75 16 27 H 0.06 1.10 6.77 -51.93 -0.35 0.74 16 28 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 29 H 0.07 0.99 7.37 -51.93 -0.38 0.61 16 30 H 0.03 0.47 7.51 -51.93 -0.39 0.08 16 31 H 0.03 0.32 8.08 -51.92 -0.42 -0.10 16 32 H 0.08 1.03 6.65 -51.93 -0.35 0.68 16 33 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.06 0.55 7.84 -51.93 -0.41 0.15 16 36 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 37 H 0.06 0.49 7.41 -51.93 -0.38 0.11 16 38 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 39 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 40 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 41 H 0.06 0.68 7.82 -51.93 -0.41 0.28 16 42 H 0.07 0.74 7.53 -51.93 -0.39 0.35 16 LS Contribution 332.21 15.07 5.01 5.01 Total: -1.00 -30.50 332.21 -11.25 -41.74 By element: Atomic # 1 Polarization: 5.04 SS G_CDS: -7.67 Total: -2.62 kcal Atomic # 6 Polarization: -20.40 SS G_CDS: -0.99 Total: -21.38 kcal Atomic # 7 Polarization: -33.38 SS G_CDS: -0.27 Total: -33.65 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.74 kcal Atomic # 16 Polarization: -3.53 SS G_CDS: -2.30 Total: -5.83 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -30.50 -11.25 -41.74 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000245499487.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.473 kcal (2) G-P(sol) polarization free energy of solvation -30.496 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.024 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.248 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.744 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.272 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds