Wall clock time and date at job start Mon Mar 30 2020 00:45:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86800 * 119.99987 * 2 1 4 4 H 1.48501 * 109.46831 * 0.02562 * 3 2 1 5 5 H 1.48495 * 109.47434 * 120.00068 * 3 2 1 6 6 H 1.48496 * 109.47534 * 240.00174 * 3 2 1 7 7 C 1.38799 * 120.00348 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99890 * 179.97438 * 7 2 1 9 9 S 1.76198 * 119.99714 * 0.02562 * 7 2 1 10 10 C 1.80998 * 99.99926 * 179.97438 * 9 7 2 11 11 C 1.53002 * 109.47403 * 179.97438 * 10 9 7 12 12 C 1.52999 * 109.47267 * 179.97438 * 11 10 9 13 13 N 1.46904 * 109.47086 * 183.53175 * 12 11 10 14 14 C 1.45416 * 110.99845 * 295.16116 * 13 12 11 15 15 C 1.52870 * 110.41263 * 183.79557 * 14 13 12 16 16 C 1.52958 * 108.18802 * 60.81686 * 15 14 13 17 17 C 1.53063 * 109.56506 * 296.74024 * 16 15 14 18 18 H 1.08995 * 110.22757 * 285.71998 * 17 16 15 19 19 C 1.54541 * 107.33386 * 165.60887 * 17 16 15 20 20 C 1.53750 * 107.11749 * 242.17646 * 19 17 16 21 21 C 1.54338 * 105.92701 * 16.72792 * 20 19 17 22 22 C 1.42788 * 110.99982 * 161.83237 * 13 12 11 23 23 H 1.09003 * 105.72204 * 281.70480 * 22 13 12 24 24 H 0.97005 * 120.00557 * 359.97438 * 1 2 3 25 25 H 1.09004 * 109.47568 * 300.00090 * 10 9 7 26 26 H 1.08999 * 109.47439 * 59.99924 * 10 9 7 27 27 H 1.08998 * 109.47250 * 299.99961 * 11 10 9 28 28 H 1.09000 * 109.46695 * 60.00196 * 11 10 9 29 29 H 1.09000 * 109.47624 * 303.53336 * 12 11 10 30 30 H 1.09006 * 109.46832 * 63.53328 * 12 11 10 31 31 H 1.09007 * 109.30833 * 304.08097 * 14 13 12 32 32 H 1.08992 * 109.31479 * 63.68901 * 14 13 12 33 33 H 1.09002 * 109.71566 * 180.48844 * 15 14 13 34 34 H 1.08996 * 109.71816 * 301.13880 * 15 14 13 35 35 H 1.08994 * 109.45845 * 56.77509 * 16 15 14 36 36 H 1.09003 * 109.44997 * 176.71607 * 16 15 14 37 37 H 1.09006 * 109.90737 * 1.54299 * 19 17 16 38 38 H 1.09001 * 109.90872 * 122.61656 * 19 17 16 39 39 H 1.09000 * 110.16067 * 135.84292 * 20 19 17 40 40 H 1.08998 * 110.15551 * 257.61573 * 20 19 17 41 41 H 1.08992 * 110.50189 * 89.88294 * 21 20 19 42 42 H 1.09000 * 110.49907 * 212.56701 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 1.2851 2.7464 0.0006 5 1 3.1040 1.6965 1.2124 6 1 3.1039 1.6965 -1.2125 7 6 2.0103 -1.2020 -0.0005 8 1 3.0903 -1.2019 -0.0010 9 16 1.1293 -2.7279 -0.0019 10 6 2.5159 -3.8913 -0.0029 11 6 1.9794 -5.3242 -0.0036 12 6 3.1515 -6.3076 -0.0051 13 7 2.6380 -7.6813 -0.0910 14 6 1.8678 -8.0248 1.0936 15 6 1.4196 -9.4850 1.0333 16 6 2.6688 -10.3660 0.9794 17 6 3.4470 -10.0739 -0.3059 18 1 2.9361 -10.5116 -1.1635 19 6 4.8522 -10.6965 -0.1450 20 6 5.8678 -9.5439 -0.2083 21 6 5.0569 -8.2516 0.0249 22 6 3.6610 -8.5846 -0.5110 23 1 3.7489 -8.4507 -1.5892 24 1 -0.4851 0.8400 0.0004 25 1 3.1246 -3.7305 -0.8928 26 1 3.1245 -3.7321 0.8871 27 1 1.3711 -5.4849 0.8865 28 1 1.3706 -5.4838 -0.8935 29 1 3.7942 -6.1057 -0.8620 30 1 3.7249 -6.1909 0.9146 31 1 2.4834 -7.8729 1.9803 32 1 0.9889 -7.3828 1.1508 33 1 0.8365 -9.7277 1.9217 34 1 0.8158 -9.6478 0.1406 35 1 3.3001 -10.1540 1.8422 36 1 2.3739 -11.4153 0.9947 37 1 4.9256 -11.2034 0.8173 38 1 5.0392 -11.4045 -0.9524 39 1 6.6192 -9.6620 0.5724 40 1 6.3443 -9.5167 -1.1883 41 1 5.0115 -8.0161 1.0881 42 1 5.4920 -7.4222 -0.5326 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000245499487.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:45:36 Heat of formation + Delta-G solvation = -47.913541 kcal Electronic energy + Delta-G solvation = -18638.438542 eV Core-core repulsion = 15935.098568 eV Total energy + Delta-G solvation = -2703.339974 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.151 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.24302 -37.18343 -35.17440 -34.60981 -33.36434 -29.93294 -28.72379 -27.85718 -26.96139 -24.38096 -23.02210 -22.45615 -20.92070 -19.56003 -19.27864 -17.49280 -16.89781 -16.76501 -16.35548 -16.28317 -15.63141 -15.48843 -14.77693 -14.73757 -14.29922 -14.07641 -13.70602 -13.59867 -13.30718 -13.13498 -12.95213 -12.75821 -12.51725 -12.43821 -12.42372 -12.07872 -11.96479 -11.75124 -11.50881 -11.43344 -11.29764 -11.13779 -11.05107 -10.96290 -10.32301 -8.97572 -8.67000 -8.37247 -6.13901 1.30931 1.40749 1.47461 1.73863 2.28365 2.87915 2.96719 3.32602 3.56444 3.68667 3.77925 3.99335 4.08148 4.10594 4.23283 4.29150 4.36711 4.45334 4.49480 4.57873 4.59748 4.67139 4.70031 4.72991 4.81198 4.83710 4.93297 4.98050 5.01237 5.09703 5.15848 5.19358 5.22877 5.25056 5.32828 5.38149 5.38999 5.42100 5.56173 6.17642 6.20889 6.59710 7.04506 8.72046 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.038667 B = 0.003338 C = 0.003131 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 723.960316 B = 8387.079252 C = 8939.875250 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.908 5.908 2 C 0.015 3.985 3 Si 0.994 3.006 4 H -0.274 1.274 5 H -0.264 1.264 6 H -0.264 1.264 7 C -0.541 4.541 8 H 0.072 0.928 9 S -0.197 6.197 10 C -0.087 4.087 11 C -0.082 4.082 12 C 0.086 3.914 13 N -0.559 5.559 14 C 0.067 3.933 15 C -0.118 4.118 16 C -0.111 4.111 17 C -0.082 4.082 18 H 0.081 0.919 19 C -0.116 4.116 20 C -0.118 4.118 21 C -0.151 4.151 22 C 0.104 3.896 23 H 0.050 0.950 24 H 0.272 0.728 25 H 0.062 0.938 26 H 0.060 0.940 27 H 0.061 0.939 28 H 0.064 0.936 29 H 0.075 0.925 30 H 0.036 0.964 31 H 0.023 0.977 32 H 0.066 0.934 33 H 0.080 0.920 34 H 0.067 0.933 35 H 0.057 0.943 36 H 0.079 0.921 37 H 0.072 0.928 38 H 0.075 0.925 39 H 0.069 0.931 40 H 0.069 0.931 41 H 0.051 0.949 42 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.718 -22.491 1.106 24.525 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.190 4.190 3 Si 0.816 3.184 4 H -0.199 1.199 5 H -0.189 1.189 6 H -0.189 1.189 7 C -0.688 4.688 8 H 0.091 0.909 9 S 0.032 5.968 10 C -0.236 4.236 11 C -0.121 4.121 12 C -0.042 4.042 13 N -0.283 5.283 14 C -0.060 4.060 15 C -0.156 4.156 16 C -0.148 4.148 17 C -0.101 4.101 18 H 0.099 0.901 19 C -0.153 4.153 20 C -0.156 4.156 21 C -0.191 4.191 22 C -0.005 4.005 23 H 0.068 0.932 24 H 0.081 0.919 25 H 0.081 0.919 26 H 0.079 0.921 27 H 0.080 0.920 28 H 0.083 0.917 29 H 0.093 0.907 30 H 0.054 0.946 31 H 0.041 0.959 32 H 0.085 0.915 33 H 0.099 0.901 34 H 0.086 0.914 35 H 0.076 0.924 36 H 0.097 0.903 37 H 0.091 0.909 38 H 0.094 0.906 39 H 0.088 0.912 40 H 0.088 0.912 41 H 0.070 0.930 42 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 8.121 -22.616 0.769 24.042 hybrid contribution 2.013 1.610 0.566 2.639 sum 10.134 -21.006 1.336 23.361 Atomic orbital electron populations 1.70148 1.07713 1.28642 1.47902 1.26080 0.96043 1.03136 0.93711 0.85063 0.77944 0.76015 0.79376 1.19896 1.18903 1.18885 1.23020 0.94745 0.92042 1.59020 0.90940 1.84638 1.14051 1.01112 1.97031 1.23144 1.00127 0.97559 1.02775 1.21182 0.98058 0.90350 1.02498 1.21831 0.95332 0.86447 1.00622 1.58232 1.29218 1.02006 1.38805 1.21679 0.96959 0.97768 0.89626 1.21579 0.98106 0.93125 1.02799 1.21665 0.96134 1.00155 0.96895 1.21457 0.97055 0.92797 0.98776 0.90094 1.22305 0.92684 0.97636 1.02714 1.22033 0.97760 0.93633 1.02186 1.22729 0.96865 0.98859 1.00644 1.20563 0.88224 0.92344 0.99339 0.93230 0.91927 0.91941 0.92142 0.92005 0.91693 0.90691 0.94625 0.95894 0.91518 0.90108 0.91432 0.92405 0.90253 0.90920 0.90596 0.91208 0.91206 0.92985 0.91793 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -55.62 13.22 21.65 0.29 -55.34 16 2 C 0.02 0.88 5.49 84.86 0.47 1.35 16 3 Si 0.99 44.42 29.55 68.60 2.03 46.45 16 4 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 5 H -0.26 -11.30 7.11 99.48 0.71 -10.59 16 6 H -0.26 -11.30 7.11 99.48 0.71 -10.59 16 7 C -0.54 -31.86 9.50 67.95 0.65 -31.21 16 8 H 0.07 4.10 7.80 -2.91 -0.02 4.08 16 9 S -0.20 -10.77 21.44 -56.49 -1.21 -11.98 16 10 C -0.09 -3.60 5.67 71.98 0.41 -3.19 16 11 C -0.08 -2.79 5.00 30.59 0.15 -2.64 16 12 C 0.09 2.39 3.93 86.30 0.34 2.73 16 13 N -0.56 -13.97 4.33 -886.93 -3.84 -17.81 16 14 C 0.07 1.56 5.23 86.54 0.45 2.02 16 15 C -0.12 -2.16 6.11 30.54 0.19 -1.97 16 16 C -0.11 -1.73 4.98 30.60 0.15 -1.58 16 17 C -0.08 -1.36 3.20 -10.63 -0.03 -1.39 16 18 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 19 C -0.12 -1.54 6.38 31.37 0.20 -1.34 16 20 C -0.12 -1.75 6.79 31.30 0.21 -1.54 16 21 C -0.15 -2.94 5.09 31.11 0.16 -2.78 16 22 C 0.10 2.20 2.41 45.36 0.11 2.31 16 23 H 0.05 1.14 8.05 -2.39 -0.02 1.12 16 24 H 0.27 15.45 8.31 -92.70 -0.77 14.67 16 25 H 0.06 2.55 8.14 -2.39 -0.02 2.53 16 26 H 0.06 2.47 8.14 -2.40 -0.02 2.45 16 27 H 0.06 2.14 6.77 -2.39 -0.02 2.12 16 28 H 0.06 2.33 8.14 -2.39 -0.02 2.31 16 29 H 0.07 2.03 7.37 -2.39 -0.02 2.01 16 30 H 0.04 0.98 7.51 -2.38 -0.02 0.96 16 31 H 0.02 0.55 8.08 -2.38 -0.02 0.53 16 32 H 0.07 1.72 6.65 -2.39 -0.02 1.70 16 33 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 34 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 35 H 0.06 0.94 7.84 -2.39 -0.02 0.92 16 36 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 37 H 0.07 0.88 7.41 -2.38 -0.02 0.86 16 38 H 0.08 0.84 8.14 -2.39 -0.02 0.83 16 39 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 40 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 41 H 0.05 1.10 7.82 -2.39 -0.02 1.08 16 42 H 0.06 1.29 7.53 -2.39 -0.02 1.27 16 Total: -1.00 -65.70 332.21 1.67 -64.04 By element: Atomic # 1 Polarization: 12.93 SS G_CDS: 0.95 Total: 13.88 kcal Atomic # 6 Polarization: -42.69 SS G_CDS: 3.45 Total: -39.24 kcal Atomic # 7 Polarization: -69.60 SS G_CDS: -3.55 Total: -73.15 kcal Atomic # 14 Polarization: 44.42 SS G_CDS: 2.03 Total: 46.45 kcal Atomic # 16 Polarization: -10.77 SS G_CDS: -1.21 Total: -11.98 kcal Total: -65.70 1.67 -64.04 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000245499487.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.123 kcal (2) G-P(sol) polarization free energy of solvation -65.705 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.582 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.668 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.036 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.914 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds