Wall clock time and date at job start Mon Mar 30 2020 00:49:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86802 * 120.00277 * 2 1 4 4 H 1.48502 * 109.47179 * 270.00189 * 3 2 1 5 5 H 1.48509 * 109.46840 * 29.99777 * 3 2 1 6 6 H 1.48492 * 109.47445 * 149.99711 * 3 2 1 7 7 C 1.37875 * 120.00179 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00590 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99903 * 359.97438 * 7 2 1 10 10 C 1.52996 * 109.47452 * 180.02562 * 9 7 2 11 11 C 1.53123 * 109.57495 * 65.29988 * 10 9 7 12 12 C 1.53034 * 109.27992 * 177.60435 * 11 10 9 13 13 N 1.46847 * 109.51345 * 300.80438 * 12 11 10 14 14 C 1.46895 * 110.99982 * 185.84805 * 13 12 11 15 15 C 1.53001 * 109.47473 * 169.99767 * 14 13 12 16 16 H 1.08997 * 108.82731 * 56.46540 * 15 14 13 17 17 C 1.52330 * 108.87008 * 174.99614 * 15 14 13 18 18 C 1.54266 * 112.58625 * 120.82120 * 17 15 14 19 19 S 1.83956 * 102.58027 * 24.52564 * 18 17 15 20 20 C 1.54256 * 108.86743 * 298.07655 * 15 14 13 21 21 C 1.46843 * 111.20124 * 61.74903 * 13 12 11 22 22 C 1.53042 * 109.52278 * 298.25596 * 21 13 12 23 23 H 0.97004 * 120.00092 * 0.02562 * 1 2 3 24 24 H 1.09002 * 109.47043 * 59.99963 * 9 7 2 25 25 H 1.08998 * 109.47580 * 300.00685 * 9 7 2 26 26 H 1.09003 * 109.52281 * 305.13219 * 10 9 7 27 27 H 1.08997 * 109.51083 * 57.65029 * 11 10 9 28 28 H 1.08998 * 109.48980 * 297.53960 * 11 10 9 29 29 H 1.09002 * 109.46271 * 180.79158 * 12 11 10 30 30 H 1.08994 * 109.46242 * 60.81457 * 12 11 10 31 31 H 1.09000 * 109.47118 * 289.99436 * 14 13 12 32 32 H 1.09003 * 109.47534 * 49.99526 * 14 13 12 33 33 H 1.09000 * 108.87138 * 241.63336 * 17 15 14 34 34 H 1.09001 * 108.87143 * 0.14858 * 17 15 14 35 35 H 1.08996 * 110.78717 * 142.79953 * 18 17 15 36 36 H 1.08998 * 110.78418 * 266.25391 * 18 17 15 37 37 H 1.08998 * 110.78868 * 332.92225 * 20 15 14 38 38 H 1.09000 * 110.78988 * 96.37312 * 20 15 14 39 39 H 1.08993 * 109.46313 * 58.27251 * 21 13 12 40 40 H 1.09000 * 109.46480 * 178.25361 * 21 13 12 41 41 H 1.08997 * 109.50758 * 179.11703 * 22 21 13 42 42 H 1.08998 * 109.50897 * 299.20258 * 22 21 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0017 10 6 2.2452 -3.6621 0.0027 11 6 3.0368 -3.6591 1.3135 12 6 3.9864 -4.8590 1.3330 13 7 3.2110 -6.1002 1.2117 14 6 4.0752 -7.2780 1.3657 15 6 3.2094 -8.5340 1.4834 16 1 2.5630 -8.5989 0.6082 17 6 4.1173 -9.7568 1.5171 18 6 3.9417 -10.5898 2.8035 19 16 2.2337 -10.1563 3.3316 20 6 2.3276 -8.4158 2.7436 21 6 2.4794 -6.1471 -0.0607 22 6 1.4849 -4.9854 -0.1219 23 1 -0.4850 0.8401 -0.0004 24 1 0.6240 -2.5575 -0.8880 25 1 0.6246 -2.5563 0.8919 26 1 2.9313 -3.5555 -0.8376 27 1 2.3476 -3.7266 2.1552 28 1 3.6137 -2.7373 1.3878 29 1 4.5414 -4.8677 2.2711 30 1 4.6840 -4.7837 0.4990 31 1 4.7272 -7.3664 0.4968 32 1 4.6812 -7.1689 2.2652 33 1 3.8927 -10.3864 0.6561 34 1 5.1544 -9.4278 1.4515 35 1 4.0213 -11.6554 2.5882 36 1 4.6679 -10.2915 3.5596 37 1 2.8034 -7.7803 3.4904 38 1 1.3369 -8.0396 2.4886 39 1 3.1842 -6.0658 -0.8880 40 1 1.9396 -7.0912 -0.1347 41 1 0.9531 -5.0113 -1.0730 42 1 0.7708 -5.0739 0.6968 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259968570.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:49:46 Heat of formation + Delta-G solvation = -25.063361 kcal Electronic energy + Delta-G solvation = -18924.427082 eV Core-core repulsion = 16222.077966 eV Total energy + Delta-G solvation = -2702.349116 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.151 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.19141 -36.81960 -34.07690 -32.21288 -30.51148 -29.96785 -28.02303 -26.22635 -24.46521 -22.80250 -22.62104 -20.71739 -19.73675 -18.92423 -16.77086 -16.33056 -16.25221 -15.35013 -14.84613 -14.47872 -14.29825 -14.14248 -13.68954 -13.37206 -13.06202 -12.89495 -12.48649 -12.15920 -12.06404 -11.95711 -11.63332 -11.52418 -11.31336 -11.11093 -10.90844 -10.70655 -10.65397 -10.56780 -10.23996 -9.99135 -9.89897 -9.53999 -9.05498 -8.86552 -8.32460 -8.14841 -7.87348 -5.97056 -3.98612 1.74790 2.18465 3.32302 3.38930 3.41543 3.94691 4.28133 4.45502 4.47530 4.68138 4.85945 4.96047 5.20306 5.28014 5.29598 5.37595 5.40220 5.40548 5.49079 5.49798 5.59099 5.67082 5.72747 5.84868 5.89443 5.94833 6.02012 6.12051 6.24237 6.43468 6.56467 6.66359 6.97468 7.09614 7.19560 7.29531 7.34872 7.70984 7.87640 8.03711 8.46719 9.08030 9.64874 11.14271 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.043877 B = 0.003401 C = 0.003336 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 637.987168 B = 8230.731341 C = 8390.969554 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.056 3.944 3 Si 0.888 3.112 4 H -0.282 1.282 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.515 4.515 8 H 0.054 0.946 9 C 0.028 3.972 10 C -0.081 4.081 11 C -0.099 4.099 12 C 0.057 3.943 13 N -0.535 5.535 14 C 0.061 3.939 15 C -0.092 4.092 16 H 0.085 0.915 17 C -0.121 4.121 18 C -0.063 4.063 19 S -0.324 6.324 20 C -0.032 4.032 21 C 0.056 3.944 22 C -0.112 4.112 23 H 0.259 0.741 24 H 0.014 0.986 25 H 0.017 0.983 26 H 0.050 0.950 27 H 0.063 0.937 28 H 0.072 0.928 29 H 0.065 0.935 30 H 0.027 0.973 31 H 0.033 0.967 32 H 0.074 0.926 33 H 0.075 0.925 34 H 0.075 0.925 35 H 0.101 0.899 36 H 0.087 0.913 37 H 0.093 0.907 38 H 0.107 0.893 39 H 0.027 0.973 40 H 0.067 0.933 41 H 0.059 0.941 42 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.964 -19.316 3.250 21.541 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.145 4.145 3 Si 0.716 3.284 4 H -0.208 1.208 5 H -0.213 1.213 6 H -0.199 1.199 7 C -0.553 4.553 8 H 0.073 0.927 9 C -0.009 4.009 10 C -0.100 4.100 11 C -0.137 4.137 12 C -0.070 4.070 13 N -0.260 5.260 14 C -0.069 4.069 15 C -0.113 4.113 16 H 0.103 0.897 17 C -0.161 4.161 18 C -0.211 4.211 19 S -0.098 6.098 20 C -0.180 4.180 21 C -0.071 4.071 22 C -0.150 4.150 23 H 0.069 0.931 24 H 0.032 0.968 25 H 0.035 0.965 26 H 0.069 0.931 27 H 0.082 0.918 28 H 0.091 0.909 29 H 0.083 0.917 30 H 0.045 0.955 31 H 0.051 0.949 32 H 0.092 0.908 33 H 0.094 0.906 34 H 0.094 0.906 35 H 0.119 0.881 36 H 0.106 0.894 37 H 0.112 0.888 38 H 0.125 0.875 39 H 0.045 0.955 40 H 0.085 0.915 41 H 0.078 0.922 42 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 7.574 -19.850 4.193 21.656 hybrid contribution 1.909 1.645 -1.240 2.808 sum 9.483 -18.205 2.953 20.738 Atomic orbital electron populations 1.69963 1.06024 1.26461 1.51094 1.25017 0.94796 0.99127 0.95546 0.86657 0.79884 0.83810 0.78016 1.20795 1.21287 1.19929 1.21253 0.92895 0.91054 1.50102 0.92746 1.19111 0.93620 0.91050 0.97107 1.21233 0.97873 0.94776 0.96098 1.21542 0.97839 0.95457 0.98873 1.22190 0.95285 0.89920 0.99645 1.61946 1.27889 1.01545 1.34635 1.22294 0.94000 0.89880 1.00686 1.21770 0.96515 0.93963 0.99004 0.89660 1.22044 1.00725 0.95817 0.97508 1.24091 0.94634 1.03163 0.99187 1.88065 1.21557 1.17420 1.82752 1.24119 1.03890 0.91815 0.98185 1.22168 0.96480 0.99427 0.89068 1.21689 0.97523 0.94264 1.01478 0.93088 0.96810 0.96513 0.93139 0.91830 0.90926 0.91674 0.95513 0.94867 0.90801 0.90646 0.90628 0.88078 0.89442 0.88846 0.87484 0.95466 0.91496 0.92213 0.91609 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.94 13.29 55.43 0.74 -26.20 16 2 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 3 Si 0.89 21.59 29.54 -169.99 -5.02 16.57 16 4 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 5 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 6 H -0.27 -6.51 7.11 56.52 0.40 -6.10 16 7 C -0.51 -14.29 8.45 -34.44 -0.29 -14.58 16 8 H 0.05 1.47 7.08 -52.49 -0.37 1.09 16 9 C 0.03 0.71 4.45 -27.89 -0.12 0.59 16 10 C -0.08 -1.62 2.20 -90.49 -0.20 -1.82 16 11 C -0.10 -1.81 5.15 -26.65 -0.14 -1.95 16 12 C 0.06 0.83 5.46 -3.84 -0.02 0.81 16 13 N -0.54 -7.06 4.28 -234.68 -1.00 -8.06 16 14 C 0.06 0.63 3.82 -3.83 -0.01 0.61 16 15 C -0.09 -0.86 2.58 -90.30 -0.23 -1.09 16 16 H 0.09 0.85 6.23 -51.93 -0.32 0.53 16 17 C -0.12 -0.92 5.98 -26.41 -0.16 -1.07 16 18 C -0.06 -0.49 7.46 37.82 0.28 -0.21 16 19 S -0.32 -3.60 23.27 -107.50 -2.50 -6.10 16 20 C -0.03 -0.34 6.57 37.81 0.25 -0.09 16 21 C 0.06 0.77 5.29 -3.83 -0.02 0.75 16 22 C -0.11 -1.89 5.38 -26.64 -0.14 -2.03 16 23 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 24 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 25 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 26 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 27 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 28 H 0.07 1.42 7.05 -51.93 -0.37 1.06 16 29 H 0.06 0.86 8.02 -51.93 -0.42 0.44 16 30 H 0.03 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.03 0.34 8.12 -51.93 -0.42 -0.08 16 32 H 0.07 0.72 7.94 -51.93 -0.41 0.31 16 33 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.08 0.50 7.51 -51.93 -0.39 0.11 16 35 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.09 1.02 7.82 -51.93 -0.41 0.61 16 38 H 0.11 1.23 8.14 -51.93 -0.42 0.80 16 39 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 16 40 H 0.07 0.82 6.13 -51.93 -0.32 0.50 16 41 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 42 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 LS Contribution 331.85 15.07 5.00 5.00 Total: -1.00 -29.48 331.85 -11.33 -40.81 By element: Atomic # 1 Polarization: 4.19 SS G_CDS: -7.63 Total: -3.44 kcal Atomic # 6 Polarization: -17.67 SS G_CDS: -0.91 Total: -18.58 kcal Atomic # 7 Polarization: -33.99 SS G_CDS: -0.27 Total: -34.26 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Atomic # 16 Polarization: -3.60 SS G_CDS: -2.50 Total: -6.10 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -29.48 -11.33 -40.81 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259968570.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.749 kcal (2) G-P(sol) polarization free energy of solvation -29.481 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.732 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.331 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.812 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.063 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds