Wall clock time and date at job start Mon Mar 30 2020 00:49:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86808 * 119.99750 * 2 1 4 4 H 1.48494 * 109.46975 * 239.99834 * 3 2 1 5 5 H 1.48499 * 109.46987 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.47036 * 119.99740 * 3 2 1 7 7 C 1.37871 * 120.00546 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00423 * 180.02562 * 7 2 1 9 9 C 1.50708 * 119.99797 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.47095 * 179.97438 * 9 7 2 11 11 C 1.53117 * 109.52163 * 185.00321 * 10 9 7 12 12 C 1.53040 * 109.31086 * 182.36154 * 11 10 9 13 13 N 1.46933 * 109.47561 * 59.15871 * 12 11 10 14 14 C 1.46902 * 110.98256 * 174.18098 * 13 12 11 15 15 C 1.53001 * 109.47143 * 308.01932 * 14 13 12 16 16 H 1.08996 * 109.60088 * 58.40469 * 15 14 13 17 17 C 1.52942 * 109.60507 * 298.07809 * 15 14 13 18 18 C 1.53708 * 112.49067 * 209.96908 * 17 15 14 19 19 S 1.83398 * 104.96781 * 2.82521 * 18 17 15 20 20 C 1.55158 * 109.60448 * 178.53769 * 15 14 13 21 21 C 1.46843 * 111.22415 * 298.27995 * 13 12 11 22 22 C 1.53037 * 109.51924 * 61.74694 * 21 13 12 23 23 H 0.97003 * 120.00534 * 359.97438 * 1 2 3 24 24 H 1.08999 * 109.46357 * 60.00519 * 9 7 2 25 25 H 1.08994 * 109.47083 * 300.00177 * 9 7 2 26 26 H 1.09000 * 109.52546 * 305.13412 * 10 9 7 27 27 H 1.09002 * 109.50299 * 302.31979 * 11 10 9 28 28 H 1.08997 * 109.50669 * 62.39857 * 11 10 9 29 29 H 1.08992 * 109.46271 * 179.21097 * 12 11 10 30 30 H 1.08998 * 109.46249 * 299.18431 * 12 11 10 31 31 H 1.08998 * 109.47369 * 68.02125 * 14 13 12 32 32 H 1.08996 * 109.47028 * 188.02007 * 14 13 12 33 33 H 1.09003 * 108.88365 * 330.76086 * 17 15 14 34 34 H 1.08995 * 108.88402 * 89.31476 * 17 15 14 35 35 H 1.08997 * 110.33953 * 121.69592 * 18 17 15 36 36 H 1.08996 * 110.34065 * 243.95539 * 18 17 15 37 37 H 1.08997 * 111.13461 * 279.28384 * 20 15 14 38 38 H 1.09006 * 111.12553 * 43.46213 * 20 15 14 39 39 H 1.08999 * 109.46637 * 301.73701 * 21 13 12 40 40 H 1.09000 * 109.46538 * 181.76232 * 21 13 12 41 41 H 1.09003 * 109.50649 * 180.87887 * 22 21 13 42 42 H 1.09004 * 109.53843 * 60.78451 * 22 21 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2124 5 1 1.2840 2.7465 0.0006 6 1 3.1028 1.6966 1.2126 7 6 2.0046 -1.1939 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2511 -2.4991 0.0017 10 6 2.2454 -3.6620 0.0015 11 6 1.4852 -4.9852 -0.1232 12 6 2.4790 -6.1475 -0.0637 13 7 3.2122 -6.1005 1.2088 14 6 4.0766 -7.2784 1.3616 15 6 3.2532 -8.5480 1.1359 16 1 2.8082 -8.5232 0.1412 17 6 2.1488 -8.6377 2.1901 18 6 1.7751 -10.0898 2.5281 19 16 2.9251 -11.1180 1.5364 20 6 4.1711 -9.7928 1.2602 21 6 3.9876 -4.8594 1.3300 22 6 3.0382 -3.6594 1.3115 23 1 -0.4851 0.8400 0.0004 24 1 0.6242 -2.5574 -0.8881 25 1 0.6248 -2.5563 0.8919 26 1 2.9309 -3.5550 -0.8393 27 1 0.7721 -5.0739 0.6964 28 1 0.9521 -5.0106 -1.0736 29 1 1.9390 -7.0913 -0.1382 30 1 3.1833 -6.0658 -0.8916 31 1 4.8838 -7.2340 0.6306 32 1 4.4974 -7.2922 2.3670 33 1 2.4872 -8.1397 3.0988 34 1 1.2623 -8.1250 1.8168 35 1 1.9181 -10.2800 3.5918 36 1 0.7431 -10.2920 2.2416 37 1 4.7288 -9.9634 0.3393 38 1 4.8434 -9.7015 2.1133 39 1 4.6848 -4.7838 0.4956 40 1 4.5433 -4.8685 2.2677 41 1 3.6152 -2.7376 1.3858 42 1 2.3495 -3.7264 2.1538 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259968573.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:49:49 Heat of formation + Delta-G solvation = -24.130889 kcal Electronic energy + Delta-G solvation = -18962.992611 eV Core-core repulsion = 16260.683930 eV Total energy + Delta-G solvation = -2702.308681 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.151 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.25346 -36.73383 -34.01157 -32.19890 -30.47752 -30.23291 -28.14540 -25.83100 -24.42129 -22.89272 -22.57004 -20.89217 -19.72878 -18.90787 -16.75049 -16.39426 -16.22057 -15.38029 -14.78114 -14.51556 -14.43802 -14.04655 -13.60494 -13.49297 -13.04820 -12.89413 -12.62049 -12.21628 -12.10806 -11.82209 -11.55083 -11.51873 -11.25809 -11.06148 -10.84898 -10.74448 -10.65415 -10.58964 -10.30741 -10.06771 -9.91193 -9.54145 -9.05639 -8.87196 -8.32618 -8.13037 -7.94297 -5.97331 -3.99006 1.64332 2.10069 3.33340 3.38173 3.40112 3.92077 4.38907 4.47188 4.48672 4.73685 4.81275 4.92709 5.12069 5.20062 5.29495 5.30457 5.37727 5.44537 5.50490 5.56342 5.59211 5.69629 5.74239 5.87321 5.94111 6.00292 6.05859 6.12318 6.24051 6.43183 6.55807 6.65938 6.97018 7.09167 7.19081 7.29164 7.34692 7.70331 7.87153 8.03281 8.46295 9.07425 9.64461 11.13953 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.049573 B = 0.003361 C = 0.003262 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 564.683328 B = 8328.608726 C = 8580.855336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.056 3.944 3 Si 0.888 3.112 4 H -0.278 1.278 5 H -0.288 1.288 6 H -0.277 1.277 7 C -0.516 4.516 8 H 0.054 0.946 9 C 0.029 3.971 10 C -0.081 4.081 11 C -0.112 4.112 12 C 0.053 3.947 13 N -0.533 5.533 14 C 0.064 3.936 15 C -0.092 4.092 16 H 0.089 0.911 17 C -0.114 4.114 18 C -0.067 4.067 19 S -0.311 6.311 20 C -0.060 4.060 21 C 0.057 3.943 22 C -0.099 4.099 23 H 0.260 0.740 24 H 0.014 0.986 25 H 0.016 0.984 26 H 0.050 0.950 27 H 0.065 0.935 28 H 0.059 0.941 29 H 0.070 0.930 30 H 0.027 0.973 31 H 0.033 0.967 32 H 0.075 0.925 33 H 0.078 0.922 34 H 0.084 0.916 35 H 0.087 0.913 36 H 0.096 0.904 37 H 0.103 0.897 38 H 0.090 0.910 39 H 0.027 0.973 40 H 0.065 0.935 41 H 0.072 0.928 42 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.018 -18.609 3.817 20.252 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.144 4.144 3 Si 0.717 3.283 4 H -0.204 1.204 5 H -0.214 1.214 6 H -0.203 1.203 7 C -0.554 4.554 8 H 0.072 0.928 9 C -0.008 4.008 10 C -0.100 4.100 11 C -0.149 4.149 12 C -0.075 4.075 13 N -0.258 5.258 14 C -0.065 4.065 15 C -0.113 4.113 16 H 0.107 0.893 17 C -0.153 4.153 18 C -0.215 4.215 19 S -0.084 6.084 20 C -0.209 4.209 21 C -0.071 4.071 22 C -0.137 4.137 23 H 0.070 0.930 24 H 0.032 0.968 25 H 0.035 0.965 26 H 0.069 0.931 27 H 0.083 0.917 28 H 0.078 0.922 29 H 0.088 0.912 30 H 0.045 0.955 31 H 0.051 0.949 32 H 0.093 0.907 33 H 0.097 0.903 34 H 0.103 0.897 35 H 0.106 0.894 36 H 0.115 0.885 37 H 0.122 0.878 38 H 0.109 0.891 39 H 0.045 0.955 40 H 0.083 0.917 41 H 0.091 0.909 42 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 6.457 -19.673 3.854 21.061 hybrid contribution 1.098 2.130 -0.312 2.416 sum 7.556 -17.543 3.542 19.427 Atomic orbital electron populations 1.69950 1.06025 1.26584 1.51018 1.25013 0.94795 0.99112 0.95525 0.86718 0.79628 0.83458 0.78546 1.20352 1.21355 1.20284 1.21220 0.92868 0.91070 1.50233 0.92790 1.19107 0.93611 0.91037 0.97086 1.21234 0.97878 0.94782 0.96109 1.21687 0.97529 0.94284 1.01439 1.22243 0.96525 0.99524 0.89200 1.62037 1.27733 1.01461 1.34594 1.22138 0.93950 0.89293 1.01167 1.22211 0.94797 0.93158 1.01099 0.89257 1.21881 0.99562 0.93933 0.99915 1.24006 1.00505 0.95639 1.01329 1.87821 1.25780 1.23525 1.71320 1.24388 0.98029 0.93187 1.05301 1.22191 0.95288 0.89906 0.99697 1.21540 0.97828 0.95451 0.98863 0.93027 0.96812 0.96533 0.93126 0.91658 0.92225 0.91172 0.95473 0.94868 0.90674 0.90348 0.89721 0.89390 0.88525 0.87832 0.89092 0.95465 0.91664 0.90932 0.91864 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.89 13.29 55.43 0.74 -26.15 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 3 Si 0.89 21.55 29.54 -169.99 -5.02 16.53 16 4 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 5 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 6 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 7 C -0.52 -14.29 8.45 -34.44 -0.29 -14.58 16 8 H 0.05 1.45 7.08 -52.49 -0.37 1.08 16 9 C 0.03 0.72 4.45 -27.88 -0.12 0.60 16 10 C -0.08 -1.63 2.20 -90.49 -0.20 -1.82 16 11 C -0.11 -1.88 5.38 -26.65 -0.14 -2.02 16 12 C 0.05 0.72 5.05 -3.79 -0.02 0.70 16 13 N -0.53 -7.02 4.41 -234.60 -1.03 -8.06 16 14 C 0.06 0.66 4.39 -3.82 -0.02 0.65 16 15 C -0.09 -0.86 2.06 -89.51 -0.18 -1.04 16 16 H 0.09 0.91 6.10 -51.93 -0.32 0.59 16 17 C -0.11 -1.07 5.49 -26.39 -0.14 -1.21 16 18 C -0.07 -0.58 7.38 37.53 0.28 -0.31 16 19 S -0.31 -3.23 23.23 -107.50 -2.50 -5.72 16 20 C -0.06 -0.51 6.86 38.30 0.26 -0.25 16 21 C 0.06 0.83 5.46 -3.84 -0.02 0.80 16 22 C -0.10 -1.80 5.15 -26.65 -0.14 -1.94 16 23 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 24 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 25 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 26 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 27 H 0.06 1.14 8.14 -51.93 -0.42 0.71 16 28 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 29 H 0.07 0.86 5.50 -51.93 -0.29 0.57 16 30 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.03 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.07 0.73 8.07 -51.93 -0.42 0.31 16 33 H 0.08 0.76 7.75 -51.93 -0.40 0.35 16 34 H 0.08 0.87 7.86 -51.93 -0.41 0.46 16 35 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 38 H 0.09 0.70 8.11 -51.93 -0.42 0.28 16 39 H 0.03 0.40 8.14 -51.93 -0.42 -0.02 16 40 H 0.06 0.86 8.12 -51.93 -0.42 0.44 16 41 H 0.07 1.42 7.05 -51.93 -0.37 1.05 16 42 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 LS Contribution 331.20 15.07 4.99 4.99 Total: -1.00 -29.30 331.20 -11.28 -40.58 By element: Atomic # 1 Polarization: 4.37 SS G_CDS: -7.62 Total: -3.25 kcal Atomic # 6 Polarization: -18.08 SS G_CDS: -0.84 Total: -18.92 kcal Atomic # 7 Polarization: -33.91 SS G_CDS: -0.30 Total: -34.21 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.53 kcal Atomic # 16 Polarization: -3.23 SS G_CDS: -2.50 Total: -5.72 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -29.30 -11.28 -40.58 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259968573.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.453 kcal (2) G-P(sol) polarization free energy of solvation -29.301 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.848 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.283 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.584 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.131 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds