Wall clock time and date at job start Mon Mar 30 2020 00:49:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86808 * 119.99750 * 2 1 4 4 H 1.48494 * 109.46975 * 239.99834 * 3 2 1 5 5 H 1.48499 * 109.46987 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.47036 * 119.99740 * 3 2 1 7 7 C 1.37871 * 120.00546 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00423 * 180.02562 * 7 2 1 9 9 C 1.50708 * 119.99797 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.47095 * 179.97438 * 9 7 2 11 11 C 1.53117 * 109.52163 * 185.00321 * 10 9 7 12 12 C 1.53040 * 109.31086 * 182.36154 * 11 10 9 13 13 N 1.46933 * 109.47561 * 59.15871 * 12 11 10 14 14 C 1.46902 * 110.98256 * 174.18098 * 13 12 11 15 15 C 1.53001 * 109.47143 * 308.01932 * 14 13 12 16 16 H 1.08996 * 109.60088 * 58.40469 * 15 14 13 17 17 C 1.52942 * 109.60507 * 298.07809 * 15 14 13 18 18 C 1.53708 * 112.49067 * 209.96908 * 17 15 14 19 19 S 1.83398 * 104.96781 * 2.82521 * 18 17 15 20 20 C 1.55158 * 109.60448 * 178.53769 * 15 14 13 21 21 C 1.46843 * 111.22415 * 298.27995 * 13 12 11 22 22 C 1.53037 * 109.51924 * 61.74694 * 21 13 12 23 23 H 0.97003 * 120.00534 * 359.97438 * 1 2 3 24 24 H 1.08999 * 109.46357 * 60.00519 * 9 7 2 25 25 H 1.08994 * 109.47083 * 300.00177 * 9 7 2 26 26 H 1.09000 * 109.52546 * 305.13412 * 10 9 7 27 27 H 1.09002 * 109.50299 * 302.31979 * 11 10 9 28 28 H 1.08997 * 109.50669 * 62.39857 * 11 10 9 29 29 H 1.08992 * 109.46271 * 179.21097 * 12 11 10 30 30 H 1.08998 * 109.46249 * 299.18431 * 12 11 10 31 31 H 1.08998 * 109.47369 * 68.02125 * 14 13 12 32 32 H 1.08996 * 109.47028 * 188.02007 * 14 13 12 33 33 H 1.09003 * 108.88365 * 330.76086 * 17 15 14 34 34 H 1.08995 * 108.88402 * 89.31476 * 17 15 14 35 35 H 1.08997 * 110.33953 * 121.69592 * 18 17 15 36 36 H 1.08996 * 110.34065 * 243.95539 * 18 17 15 37 37 H 1.08997 * 111.13461 * 279.28384 * 20 15 14 38 38 H 1.09006 * 111.12553 * 43.46213 * 20 15 14 39 39 H 1.08999 * 109.46637 * 301.73701 * 21 13 12 40 40 H 1.09000 * 109.46538 * 181.76232 * 21 13 12 41 41 H 1.09003 * 109.50649 * 180.87887 * 22 21 13 42 42 H 1.09004 * 109.53843 * 60.78451 * 22 21 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2124 5 1 1.2840 2.7465 0.0006 6 1 3.1028 1.6966 1.2126 7 6 2.0046 -1.1939 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2511 -2.4991 0.0017 10 6 2.2454 -3.6620 0.0015 11 6 1.4852 -4.9852 -0.1232 12 6 2.4790 -6.1475 -0.0637 13 7 3.2122 -6.1005 1.2088 14 6 4.0766 -7.2784 1.3616 15 6 3.2532 -8.5480 1.1359 16 1 2.8082 -8.5232 0.1412 17 6 2.1488 -8.6377 2.1901 18 6 1.7751 -10.0898 2.5281 19 16 2.9251 -11.1180 1.5364 20 6 4.1711 -9.7928 1.2602 21 6 3.9876 -4.8594 1.3300 22 6 3.0382 -3.6594 1.3115 23 1 -0.4851 0.8400 0.0004 24 1 0.6242 -2.5574 -0.8881 25 1 0.6248 -2.5563 0.8919 26 1 2.9309 -3.5550 -0.8393 27 1 0.7721 -5.0739 0.6964 28 1 0.9521 -5.0106 -1.0736 29 1 1.9390 -7.0913 -0.1382 30 1 3.1833 -6.0658 -0.8916 31 1 4.8838 -7.2340 0.6306 32 1 4.4974 -7.2922 2.3670 33 1 2.4872 -8.1397 3.0988 34 1 1.2623 -8.1250 1.8168 35 1 1.9181 -10.2800 3.5918 36 1 0.7431 -10.2920 2.2416 37 1 4.7288 -9.9634 0.3393 38 1 4.8434 -9.7015 2.1133 39 1 4.6848 -4.7838 0.4956 40 1 4.5433 -4.8685 2.2677 41 1 3.6152 -2.7376 1.3858 42 1 2.3495 -3.7264 2.1538 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259968573.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:49:48 Heat of formation + Delta-G solvation = -39.871061 kcal Electronic energy + Delta-G solvation = -18963.675156 eV Core-core repulsion = 16260.683930 eV Total energy + Delta-G solvation = -2702.991226 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.151 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.37852 -37.81458 -35.57709 -33.99244 -31.72864 -31.17652 -29.66402 -27.08139 -25.69130 -24.22352 -23.77482 -22.31381 -20.70425 -20.29395 -18.41040 -17.53506 -17.27827 -16.54295 -16.29944 -15.83841 -15.38632 -15.11786 -14.88618 -14.67765 -14.42448 -14.03879 -13.92398 -13.67412 -13.11092 -12.99777 -12.84886 -12.76570 -12.69392 -12.48034 -12.28226 -12.10338 -11.97740 -11.95602 -11.69078 -11.39598 -11.23159 -10.89935 -10.84029 -10.61449 -10.51055 -9.17453 -8.72676 -8.16786 -6.26644 0.93901 1.39710 1.40249 1.42388 1.50061 2.42018 2.94288 3.16261 3.63978 3.71334 3.97157 4.04187 4.09558 4.12103 4.15374 4.27428 4.37905 4.47180 4.51251 4.60177 4.66661 4.70788 4.75764 4.80811 4.86109 4.88352 4.97100 5.00438 5.11610 5.17621 5.26142 5.33283 5.39241 5.43744 5.48486 5.59032 5.82391 5.90385 6.19008 6.24524 6.31785 6.89695 7.41839 8.94927 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.049573 B = 0.003361 C = 0.003262 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 564.683328 B = 8328.608726 C = 8580.855336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.002 4.002 3 Si 0.960 3.040 4 H -0.268 1.268 5 H -0.285 1.285 6 H -0.266 1.266 7 C -0.531 4.531 8 H 0.061 0.939 9 C 0.034 3.966 10 C -0.075 4.075 11 C -0.107 4.107 12 C 0.063 3.937 13 N -0.540 5.540 14 C 0.068 3.932 15 C -0.086 4.086 16 H 0.083 0.917 17 C -0.111 4.111 18 C -0.056 4.056 19 S -0.358 6.358 20 C -0.046 4.046 21 C 0.067 3.933 22 C -0.094 4.094 23 H 0.262 0.738 24 H -0.017 1.017 25 H -0.012 1.012 26 H 0.045 0.955 27 H 0.055 0.945 28 H 0.057 0.943 29 H 0.090 0.910 30 H 0.030 0.970 31 H 0.042 0.958 32 H 0.088 0.912 33 H 0.078 0.922 34 H 0.074 0.926 35 H 0.098 0.902 36 H 0.099 0.901 37 H 0.113 0.887 38 H 0.104 0.896 39 H 0.031 0.969 40 H 0.086 0.914 41 H 0.055 0.945 42 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.070 -19.396 4.244 21.828 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.200 4.200 3 Si 0.785 3.215 4 H -0.193 1.193 5 H -0.211 1.211 6 H -0.191 1.191 7 C -0.569 4.569 8 H 0.079 0.921 9 C -0.003 4.003 10 C -0.094 4.094 11 C -0.145 4.145 12 C -0.065 4.065 13 N -0.265 5.265 14 C -0.061 4.061 15 C -0.107 4.107 16 H 0.101 0.899 17 C -0.150 4.150 18 C -0.204 4.204 19 S -0.131 6.131 20 C -0.194 4.194 21 C -0.061 4.061 22 C -0.132 4.132 23 H 0.070 0.930 24 H 0.002 0.998 25 H 0.006 0.994 26 H 0.064 0.936 27 H 0.074 0.926 28 H 0.075 0.925 29 H 0.108 0.892 30 H 0.048 0.952 31 H 0.060 0.940 32 H 0.106 0.894 33 H 0.097 0.903 34 H 0.093 0.907 35 H 0.116 0.884 36 H 0.118 0.882 37 H 0.132 0.868 38 H 0.122 0.878 39 H 0.049 0.951 40 H 0.104 0.896 41 H 0.073 0.927 42 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 8.525 -20.480 4.283 22.593 hybrid contribution 0.406 2.364 -0.439 2.438 sum 8.930 -18.116 3.844 20.560 Atomic orbital electron populations 1.70097 1.07817 1.27617 1.52146 1.25959 0.95686 1.03230 0.95081 0.85579 0.78322 0.78467 0.79168 1.19291 1.21093 1.19077 1.21637 0.93388 0.92159 1.49683 0.92131 1.19003 0.94025 0.93126 0.94153 1.21085 0.96866 0.94289 0.97113 1.21592 0.97926 0.93998 1.00968 1.22117 0.95972 0.98652 0.89750 1.61982 1.28439 1.02001 1.34108 1.22178 0.93681 0.88005 1.02220 1.22132 0.94791 0.93107 1.00640 0.89889 1.21848 0.99198 0.94077 0.99875 1.24009 1.00162 0.94707 1.01526 1.88021 1.27549 1.25575 1.71982 1.24398 0.97304 0.91323 1.06396 1.22025 0.94250 0.88803 1.01000 1.21409 0.97863 0.96912 0.96986 0.92953 0.99826 0.99411 0.93625 0.92621 0.92456 0.89154 0.95188 0.93956 0.89369 0.90327 0.90723 0.88383 0.88200 0.86817 0.87779 0.95071 0.89588 0.92677 0.93243 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.65 13.29 21.44 0.28 -57.37 16 2 C 0.00 -0.14 5.46 84.65 0.46 0.33 16 3 Si 0.96 44.39 29.54 68.60 2.03 46.42 16 4 H -0.27 -11.89 7.11 99.48 0.71 -11.19 16 5 H -0.29 -13.00 7.11 99.48 0.71 -12.29 16 6 H -0.27 -11.74 7.11 99.48 0.71 -11.04 16 7 C -0.53 -30.04 8.45 25.60 0.22 -29.83 16 8 H 0.06 3.27 7.08 -2.91 -0.02 3.25 16 9 C 0.03 1.80 4.45 29.85 0.13 1.93 16 10 C -0.07 -3.04 2.20 -10.71 -0.02 -3.06 16 11 C -0.11 -3.59 5.38 30.65 0.16 -3.43 16 12 C 0.06 1.60 5.05 86.31 0.44 2.04 16 13 N -0.54 -12.89 4.41 -896.15 -3.95 -16.84 16 14 C 0.07 1.17 4.39 86.30 0.38 1.54 16 15 C -0.09 -1.36 2.06 -10.07 -0.02 -1.38 16 16 H 0.08 1.45 6.10 -2.39 -0.01 1.43 16 17 C -0.11 -1.83 5.49 30.81 0.17 -1.66 16 18 C -0.06 -0.88 7.38 72.22 0.53 -0.35 16 19 S -0.36 -6.81 23.23 -56.49 -1.31 -8.12 16 20 C -0.05 -0.65 6.86 72.72 0.50 -0.15 16 21 C 0.07 1.80 5.46 86.33 0.47 2.27 16 22 C -0.09 -3.39 5.15 30.65 0.16 -3.24 16 23 H 0.26 15.21 8.31 -92.71 -0.77 14.44 16 24 H -0.02 -0.97 8.14 -2.39 -0.02 -0.99 16 25 H -0.01 -0.73 8.14 -2.39 -0.02 -0.74 16 26 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 27 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 28 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 29 H 0.09 1.99 5.50 -2.39 -0.01 1.98 16 30 H 0.03 0.77 8.14 -2.39 -0.02 0.75 16 31 H 0.04 0.69 8.14 -2.39 -0.02 0.67 16 32 H 0.09 1.34 8.07 -2.39 -0.02 1.32 16 33 H 0.08 1.31 7.75 -2.39 -0.02 1.29 16 34 H 0.07 1.40 7.86 -2.39 -0.02 1.38 16 35 H 0.10 1.34 8.14 -2.39 -0.02 1.32 16 36 H 0.10 1.49 8.14 -2.39 -0.02 1.47 16 37 H 0.11 1.40 8.14 -2.39 -0.02 1.38 16 38 H 0.10 1.23 8.11 -2.38 -0.02 1.21 16 39 H 0.03 0.83 8.14 -2.39 -0.02 0.81 16 40 H 0.09 1.99 8.12 -2.39 -0.02 1.97 16 41 H 0.05 2.15 7.05 -2.39 -0.02 2.14 16 42 H 0.05 1.90 8.14 -2.38 -0.02 1.88 16 Total: -1.00 -64.32 331.20 1.58 -62.73 By element: Atomic # 1 Polarization: 7.19 SS G_CDS: 0.96 Total: 8.15 kcal Atomic # 6 Polarization: -38.55 SS G_CDS: 3.58 Total: -34.97 kcal Atomic # 7 Polarization: -70.54 SS G_CDS: -3.67 Total: -74.20 kcal Atomic # 14 Polarization: 44.39 SS G_CDS: 2.03 Total: 46.42 kcal Atomic # 16 Polarization: -6.81 SS G_CDS: -1.31 Total: -8.12 kcal Total: -64.32 1.58 -62.73 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259968573.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.863 kcal (2) G-P(sol) polarization free energy of solvation -64.315 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.452 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.581 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.734 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.871 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds