Wall clock time and date at job start Mon Mar 30 2020 00:54:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17403 * 1 3 3 C 1.43200 * 179.97438 * 2 1 4 4 C 1.39539 * 120.13938 * 92.64220 * 3 2 1 5 5 C 1.37966 * 119.85181 * 179.76069 * 4 3 2 6 6 C 1.38346 * 120.14618 * 0.48911 * 5 4 3 7 7 C 1.50702 * 119.86007 * 179.74117 * 6 5 4 8 8 N 1.46500 * 109.46764 * 270.02276 * 7 6 5 9 9 C 1.36935 * 120.00247 * 269.99515 * 8 7 6 10 10 H 1.08002 * 120.00269 * 141.96647 * 9 8 7 11 11 C 1.38815 * 120.00054 * 321.97055 * 9 8 7 12 12 N 1.31618 * 120.00179 * 156.21613 * 11 9 8 13 13 Si 1.86799 * 119.99945 * 336.21762 * 11 9 8 14 14 H 1.48493 * 109.47262 * 95.29366 * 13 11 9 15 15 H 1.48502 * 109.46984 * 215.29358 * 13 11 9 16 16 H 1.48506 * 109.46992 * 335.29096 * 13 11 9 17 17 C 1.46503 * 119.99865 * 90.00480 * 8 7 6 18 18 C 1.54270 * 110.03110 * 242.56802 * 17 8 7 19 19 C 1.54959 * 104.16346 * 217.13441 * 18 17 8 20 20 C 1.54892 * 102.77359 * 37.89138 * 19 18 17 21 21 C 1.53878 * 110.03403 * 125.35281 * 17 8 7 22 22 C 1.38349 * 120.28303 * 359.76586 * 6 5 4 23 23 C 1.37972 * 120.14000 * 359.97438 * 22 6 5 24 24 H 4.52066 * 14.02088 * 0.02562 * 4 2 1 25 25 H 1.07998 * 120.06939 * 359.96870 * 4 3 2 26 26 H 1.08007 * 119.92642 * 180.20688 * 5 4 3 27 27 H 1.08996 * 109.46940 * 30.02282 * 7 6 5 28 28 H 1.08993 * 109.47096 * 150.02470 * 7 6 5 29 29 H 0.97001 * 120.00419 * 180.02562 * 12 11 9 30 30 H 1.08995 * 110.01947 * 3.96078 * 17 8 7 31 31 H 1.08997 * 110.48493 * 335.79059 * 18 17 8 32 32 H 1.09004 * 110.48117 * 98.42557 * 18 17 8 33 33 H 1.08998 * 110.72155 * 279.57567 * 19 18 17 34 34 H 1.09001 * 110.92479 * 156.29111 * 19 18 17 35 35 H 1.09002 * 110.48498 * 203.40802 * 20 19 18 36 36 H 1.08994 * 110.60217 * 80.81582 * 20 19 18 37 37 H 1.08995 * 110.03432 * 238.56432 * 21 17 8 38 38 H 1.09001 * 110.02797 * 359.95202 * 21 17 8 39 39 H 1.07998 * 119.92358 * 179.97438 * 22 6 5 40 40 H 1.08007 * 120.06842 * 179.97438 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6060 0.0006 0.0000 4 6 3.3066 0.0566 -1.2055 5 6 4.6863 0.0619 -1.1983 6 6 5.3751 0.0017 0.0000 7 6 6.8821 0.0019 -0.0001 8 7 7.3706 -1.3774 -0.0701 9 6 7.5991 -2.0822 1.0815 10 1 7.3586 -3.1341 1.1277 11 6 8.1397 -1.4447 2.1898 12 7 7.9393 -1.9357 3.3944 13 14 9.1516 0.1102 1.9715 14 1 8.2814 1.2981 2.1628 15 1 10.2471 0.1326 2.9738 16 1 9.7310 0.1359 0.6044 17 6 7.6149 -2.0028 -1.3722 18 6 6.6831 -3.2181 -1.5579 19 6 7.5569 -4.2547 -2.3084 20 6 8.9503 -4.0613 -1.6603 21 6 9.0560 -2.5384 -1.4377 22 6 4.6864 -0.0593 1.1983 23 6 3.3067 -0.0599 1.2051 24 1 -1.0500 0.0005 0.0001 25 1 2.7700 0.0990 -2.1417 26 1 5.2298 0.1085 -2.1305 27 1 7.2453 0.5603 -0.8628 28 1 7.2453 0.4700 0.9148 29 1 8.3167 -1.4900 4.1689 30 1 7.4489 -1.2795 -2.1705 31 1 6.3715 -3.6112 -0.5903 32 1 5.8146 -2.9448 -2.1573 33 1 7.5920 -4.0298 -3.3744 34 1 7.1901 -5.2673 -2.1406 35 1 9.7354 -4.4036 -2.3345 36 1 9.0078 -4.5907 -0.7093 37 1 9.5889 -2.0758 -2.2683 38 1 9.5738 -2.3323 -0.5009 39 1 5.2300 -0.1065 2.1303 40 1 2.7702 -0.1079 2.1413 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000278893068.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:54:44 Heat of formation + Delta-G solvation = 91.724224 kcal Electronic energy + Delta-G solvation = -20452.433418 eV Core-core repulsion = 17619.704640 eV Total energy + Delta-G solvation = -2832.728778 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.148 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.01965 -37.74748 -34.85533 -33.29019 -31.60938 -30.50081 -30.07190 -27.92690 -27.13349 -25.76277 -22.88145 -22.11927 -21.31329 -20.03164 -18.95070 -18.60714 -16.71445 -15.68047 -15.46664 -15.36053 -14.80759 -14.51216 -14.31791 -13.48468 -13.16944 -13.00313 -12.85831 -12.66481 -12.46810 -12.22647 -11.57810 -11.40556 -11.03551 -10.90254 -10.72340 -10.57413 -10.46128 -10.42516 -10.31739 -10.21257 -10.01278 -9.87618 -9.74104 -9.53062 -8.53409 -8.46944 -7.92498 -6.84194 -6.05032 -3.43586 1.35778 1.90068 2.90541 3.25385 3.32206 3.44430 3.48309 4.37347 4.47104 4.48290 5.02597 5.21081 5.31431 5.35476 5.37120 5.38876 5.62565 5.65001 5.80444 5.93888 5.97290 6.03627 6.16503 6.19412 6.23284 6.32466 6.41314 6.43714 6.51277 6.54338 6.55645 6.61468 6.73565 6.83223 6.92848 6.96349 7.11244 7.17096 7.27304 7.46137 7.69134 8.01313 8.38972 8.95827 9.67137 10.08158 11.09944 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.015574 B = 0.007133 C = 0.005581 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1797.404076 B = 3924.409044 C = 5015.947281 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.124 4.124 3 C -0.024 4.024 4 C -0.099 4.099 5 C -0.119 4.119 6 C -0.061 4.061 7 C 0.163 3.837 8 N -0.589 5.589 9 C -0.255 4.255 10 H 0.080 0.920 11 C 0.040 3.960 12 N -0.893 5.893 13 Si 0.864 3.136 14 H -0.285 1.285 15 H -0.301 1.301 16 H -0.266 1.266 17 C 0.174 3.826 18 C -0.133 4.133 19 C -0.123 4.123 20 C -0.117 4.117 21 C -0.132 4.132 22 C -0.093 4.093 23 C -0.094 4.094 24 H 0.220 0.780 25 H 0.116 0.884 26 H 0.118 0.882 27 H 0.050 0.950 28 H 0.064 0.936 29 H 0.263 0.737 30 H 0.051 0.949 31 H 0.077 0.923 32 H 0.048 0.952 33 H 0.054 0.946 34 H 0.054 0.946 35 H 0.048 0.952 36 H 0.065 0.935 37 H 0.044 0.956 38 H 0.081 0.919 39 H 0.131 0.869 40 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.944 2.647 -9.414 11.444 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.124 4.124 3 C -0.024 4.024 4 C -0.117 4.117 5 C -0.138 4.138 6 C -0.064 4.064 7 C 0.038 3.962 8 N -0.309 5.309 9 C -0.384 4.384 10 H 0.097 0.903 11 C -0.161 4.161 12 N -0.533 5.533 13 Si 0.694 3.306 14 H -0.213 1.213 15 H -0.229 1.229 16 H -0.191 1.191 17 C 0.068 3.932 18 C -0.172 4.172 19 C -0.161 4.161 20 C -0.155 4.155 21 C -0.171 4.171 22 C -0.112 4.112 23 C -0.112 4.112 24 H 0.237 0.763 25 H 0.134 0.866 26 H 0.136 0.864 27 H 0.068 0.932 28 H 0.082 0.918 29 H 0.073 0.927 30 H 0.069 0.931 31 H 0.096 0.904 32 H 0.066 0.934 33 H 0.073 0.927 34 H 0.073 0.927 35 H 0.067 0.933 36 H 0.084 0.916 37 H 0.062 0.938 38 H 0.100 0.900 39 H 0.149 0.851 40 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -5.836 2.641 -9.221 11.228 hybrid contribution 0.291 0.760 0.093 0.819 sum -5.545 3.401 -9.128 11.208 Atomic orbital electron populations 1.24714 0.95644 1.02013 1.00708 1.20296 0.92194 0.99806 1.00075 1.15866 0.86016 1.06391 0.94174 1.20988 0.94143 1.00363 0.96235 1.20866 0.93279 1.01821 0.97803 1.21083 0.98763 0.94154 0.92441 1.20379 0.87499 0.87971 1.00368 1.44284 1.73233 1.11057 1.02294 1.18611 1.36201 0.95573 0.87974 0.90251 1.25453 0.97890 0.97490 0.95286 1.69894 1.44358 1.41445 0.97600 0.87139 0.81321 0.84147 0.78033 1.21291 1.22896 1.19092 1.21064 0.92297 0.93015 0.86842 1.22816 0.97415 0.96578 1.00428 1.22435 0.96353 0.98725 0.98554 1.22239 0.95978 0.97235 0.99999 1.22522 0.98531 0.94556 1.01534 1.21098 0.93045 0.98108 0.98950 1.21144 0.94365 0.99266 0.96402 0.76339 0.86643 0.86432 0.93199 0.91802 0.92692 0.93093 0.90425 0.93359 0.92715 0.92731 0.93290 0.91612 0.93752 0.90042 0.85138 0.86377 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -2.71 19.25 29.55 0.57 -2.15 16 2 C -0.12 -1.92 13.24 -38.84 -0.51 -2.44 16 3 C -0.02 -0.41 5.72 -107.00 -0.61 -1.02 16 4 C -0.10 -1.58 9.75 -39.20 -0.38 -1.96 16 5 C -0.12 -1.98 9.68 -39.64 -0.38 -2.36 16 6 C -0.06 -1.17 5.47 -104.54 -0.57 -1.74 16 7 C 0.16 3.35 4.63 -5.19 -0.02 3.32 16 8 N -0.59 -12.88 2.00 -165.75 -0.33 -13.21 16 9 C -0.26 -6.54 8.19 -15.06 -0.12 -6.66 16 10 H 0.08 2.26 7.09 -52.49 -0.37 1.89 16 11 C 0.04 1.07 5.27 -17.43 -0.09 0.98 16 12 N -0.89 -25.75 13.97 55.49 0.78 -24.97 16 13 Si 0.86 20.89 25.18 -169.99 -4.28 16.61 16 14 H -0.28 -6.73 6.65 56.52 0.38 -6.35 16 15 H -0.30 -7.52 7.11 56.52 0.40 -7.12 16 16 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 17 C 0.17 3.29 3.42 -66.81 -0.23 3.07 16 18 C -0.13 -2.38 6.43 -25.03 -0.16 -2.54 16 19 C -0.12 -1.89 6.91 -24.70 -0.17 -2.06 16 20 C -0.12 -1.91 6.83 -25.07 -0.17 -2.09 16 21 C -0.13 -2.42 6.25 -25.61 -0.16 -2.58 16 22 C -0.09 -1.83 9.68 -39.64 -0.38 -2.21 16 23 C -0.09 -1.66 9.75 -39.20 -0.38 -2.04 16 24 H 0.22 1.80 7.80 -54.09 -0.42 1.38 16 25 H 0.12 1.57 8.06 -52.49 -0.42 1.15 16 26 H 0.12 1.72 8.06 -52.48 -0.42 1.30 16 27 H 0.05 0.91 7.84 -51.93 -0.41 0.50 16 28 H 0.06 1.43 3.38 -51.93 -0.18 1.26 16 29 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 30 H 0.05 0.88 7.81 -51.93 -0.41 0.48 16 31 H 0.08 1.63 6.65 -51.93 -0.35 1.28 16 32 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 33 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 35 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 37 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.08 1.74 7.17 -51.93 -0.37 1.36 16 39 H 0.13 2.77 8.06 -52.49 -0.42 2.35 16 40 H 0.12 1.90 8.06 -52.48 -0.42 1.48 16 LS Contribution 329.63 15.07 4.97 4.97 Total: -1.00 -28.15 329.63 -8.55 -36.70 By element: Atomic # 1 Polarization: 10.28 SS G_CDS: -5.89 Total: 4.39 kcal Atomic # 6 Polarization: -20.70 SS G_CDS: -3.79 Total: -24.49 kcal Atomic # 7 Polarization: -38.63 SS G_CDS: 0.44 Total: -38.19 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -4.28 Total: 16.61 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -28.15 -8.55 -36.70 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000278893068.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.429 kcal (2) G-P(sol) polarization free energy of solvation -28.154 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.275 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.551 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.705 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.724 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds