Wall clock time and date at job start Mon Mar 30 2020 00:54:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17403 * 1 3 3 C 1.43200 * 179.97438 * 2 1 4 4 C 1.39539 * 120.13938 * 92.64220 * 3 2 1 5 5 C 1.37966 * 119.85181 * 179.76069 * 4 3 2 6 6 C 1.38346 * 120.14618 * 0.48911 * 5 4 3 7 7 C 1.50702 * 119.86007 * 179.74117 * 6 5 4 8 8 N 1.46500 * 109.46764 * 270.02276 * 7 6 5 9 9 C 1.36935 * 120.00247 * 269.99515 * 8 7 6 10 10 H 1.08002 * 120.00269 * 141.96647 * 9 8 7 11 11 C 1.38815 * 120.00054 * 321.97055 * 9 8 7 12 12 N 1.31618 * 120.00179 * 156.21613 * 11 9 8 13 13 Si 1.86799 * 119.99945 * 336.21762 * 11 9 8 14 14 H 1.48493 * 109.47262 * 95.29366 * 13 11 9 15 15 H 1.48502 * 109.46984 * 215.29358 * 13 11 9 16 16 H 1.48506 * 109.46992 * 335.29096 * 13 11 9 17 17 C 1.46503 * 119.99865 * 90.00480 * 8 7 6 18 18 C 1.54270 * 110.03110 * 242.56802 * 17 8 7 19 19 C 1.54959 * 104.16346 * 217.13441 * 18 17 8 20 20 C 1.54892 * 102.77359 * 37.89138 * 19 18 17 21 21 C 1.53878 * 110.03403 * 125.35281 * 17 8 7 22 22 C 1.38349 * 120.28303 * 359.76586 * 6 5 4 23 23 C 1.37972 * 120.14000 * 359.97438 * 22 6 5 24 24 H 4.52066 * 14.02088 * 0.02562 * 4 2 1 25 25 H 1.07998 * 120.06939 * 359.96870 * 4 3 2 26 26 H 1.08007 * 119.92642 * 180.20688 * 5 4 3 27 27 H 1.08996 * 109.46940 * 30.02282 * 7 6 5 28 28 H 1.08993 * 109.47096 * 150.02470 * 7 6 5 29 29 H 0.97001 * 120.00419 * 180.02562 * 12 11 9 30 30 H 1.08995 * 110.01947 * 3.96078 * 17 8 7 31 31 H 1.08997 * 110.48493 * 335.79059 * 18 17 8 32 32 H 1.09004 * 110.48117 * 98.42557 * 18 17 8 33 33 H 1.08998 * 110.72155 * 279.57567 * 19 18 17 34 34 H 1.09001 * 110.92479 * 156.29111 * 19 18 17 35 35 H 1.09002 * 110.48498 * 203.40802 * 20 19 18 36 36 H 1.08994 * 110.60217 * 80.81582 * 20 19 18 37 37 H 1.08995 * 110.03432 * 238.56432 * 21 17 8 38 38 H 1.09001 * 110.02797 * 359.95202 * 21 17 8 39 39 H 1.07998 * 119.92358 * 179.97438 * 22 6 5 40 40 H 1.08007 * 120.06842 * 179.97438 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6060 0.0006 0.0000 4 6 3.3066 0.0566 -1.2055 5 6 4.6863 0.0619 -1.1983 6 6 5.3751 0.0017 0.0000 7 6 6.8821 0.0019 -0.0001 8 7 7.3706 -1.3774 -0.0701 9 6 7.5991 -2.0822 1.0815 10 1 7.3586 -3.1341 1.1277 11 6 8.1397 -1.4447 2.1898 12 7 7.9393 -1.9357 3.3944 13 14 9.1516 0.1102 1.9715 14 1 8.2814 1.2981 2.1628 15 1 10.2471 0.1326 2.9738 16 1 9.7310 0.1359 0.6044 17 6 7.6149 -2.0028 -1.3722 18 6 6.6831 -3.2181 -1.5579 19 6 7.5569 -4.2547 -2.3084 20 6 8.9503 -4.0613 -1.6603 21 6 9.0560 -2.5384 -1.4377 22 6 4.6864 -0.0593 1.1983 23 6 3.3067 -0.0599 1.2051 24 1 -1.0500 0.0005 0.0001 25 1 2.7700 0.0990 -2.1417 26 1 5.2298 0.1085 -2.1305 27 1 7.2453 0.5603 -0.8628 28 1 7.2453 0.4700 0.9148 29 1 8.3167 -1.4900 4.1689 30 1 7.4489 -1.2795 -2.1705 31 1 6.3715 -3.6112 -0.5903 32 1 5.8146 -2.9448 -2.1573 33 1 7.5920 -4.0298 -3.3744 34 1 7.1901 -5.2673 -2.1406 35 1 9.7354 -4.4036 -2.3345 36 1 9.0078 -4.5907 -0.7093 37 1 9.5889 -2.0758 -2.2683 38 1 9.5738 -2.3323 -0.5009 39 1 5.2300 -0.1065 2.1303 40 1 2.7702 -0.1079 2.1413 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000278893068.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:54:43 Heat of formation + Delta-G solvation = 78.563595 kcal Electronic energy + Delta-G solvation = -20453.004106 eV Core-core repulsion = 17619.704640 eV Total energy + Delta-G solvation = -2833.299465 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.148 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.43030 -39.21188 -36.37411 -34.66757 -33.45916 -31.86072 -31.46071 -29.33683 -28.61757 -27.46939 -24.54012 -23.49080 -22.78737 -21.38025 -20.57084 -19.78715 -18.51719 -17.25550 -16.96200 -16.80958 -16.20653 -16.00313 -15.81036 -15.04929 -14.73079 -14.44613 -14.36564 -14.10676 -13.96537 -13.91980 -13.12169 -13.08443 -12.63459 -12.37552 -12.16813 -12.04339 -11.92165 -11.82800 -11.76122 -11.70779 -11.52863 -11.32934 -11.23049 -11.18196 -10.55313 -9.83696 -9.27177 -8.66350 -8.14545 -5.48977 0.05539 0.53266 1.30842 1.42262 1.51992 1.82378 2.09769 2.45207 2.99551 3.19695 3.42946 3.48639 3.95733 3.97579 4.00721 4.09727 4.17744 4.28708 4.43879 4.53793 4.68450 4.74173 4.76886 4.79053 4.86905 4.93562 4.95943 4.98351 5.17736 5.19419 5.21818 5.23943 5.33055 5.51819 5.55848 5.57902 5.63032 5.67670 5.83802 6.01782 6.09573 6.30226 6.62226 7.06831 7.71557 8.12782 9.05329 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.015574 B = 0.007133 C = 0.005581 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1797.404076 B = 3924.409044 C = 5015.947281 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.193 4.193 3 C -0.019 4.019 4 C -0.097 4.097 5 C -0.108 4.108 6 C -0.080 4.080 7 C 0.161 3.839 8 N -0.597 5.597 9 C -0.224 4.224 10 H 0.038 0.962 11 C -0.014 4.014 12 N -0.946 5.946 13 Si 0.923 3.077 14 H -0.279 1.279 15 H -0.315 1.315 16 H -0.252 1.252 17 C 0.166 3.834 18 C -0.129 4.129 19 C -0.112 4.112 20 C -0.115 4.115 21 C -0.133 4.133 22 C -0.115 4.115 23 C -0.107 4.107 24 H 0.264 0.736 25 H 0.147 0.853 26 H 0.147 0.853 27 H 0.080 0.920 28 H 0.039 0.961 29 H 0.259 0.741 30 H 0.081 0.919 31 H 0.033 0.967 32 H 0.063 0.937 33 H 0.086 0.914 34 H 0.060 0.940 35 H 0.077 0.923 36 H 0.036 0.964 37 H 0.072 0.928 38 H 0.042 0.958 39 H 0.097 0.903 40 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.679 3.628 -13.452 15.908 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.193 4.193 3 C -0.020 4.020 4 C -0.114 4.114 5 C -0.127 4.127 6 C -0.083 4.083 7 C 0.036 3.964 8 N -0.318 5.318 9 C -0.354 4.354 10 H 0.055 0.945 11 C -0.210 4.210 12 N -0.591 5.591 13 Si 0.753 3.247 14 H -0.207 1.207 15 H -0.244 1.244 16 H -0.175 1.175 17 C 0.060 3.940 18 C -0.168 4.168 19 C -0.149 4.149 20 C -0.153 4.153 21 C -0.172 4.172 22 C -0.134 4.134 23 C -0.125 4.125 24 H 0.280 0.720 25 H 0.165 0.835 26 H 0.165 0.835 27 H 0.099 0.901 28 H 0.057 0.943 29 H 0.068 0.932 30 H 0.099 0.901 31 H 0.052 0.948 32 H 0.082 0.918 33 H 0.105 0.895 34 H 0.079 0.921 35 H 0.096 0.904 36 H 0.055 0.945 37 H 0.091 0.909 38 H 0.061 0.939 39 H 0.115 0.885 40 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -7.582 3.640 -13.309 15.744 hybrid contribution 0.572 0.417 1.277 1.461 sum -7.010 4.057 -12.032 14.504 Atomic orbital electron populations 1.25758 0.96364 0.97901 0.97320 1.20440 0.92561 1.03041 1.03273 1.16086 0.87416 1.04519 0.93945 1.21351 0.93982 0.98990 0.97120 1.21097 0.93756 1.00212 0.97621 1.20949 0.97959 0.96149 0.93264 1.20386 0.88640 0.86970 1.00398 1.44362 1.73847 1.11351 1.02248 1.18306 1.33854 0.94026 0.89255 0.94478 1.25927 0.99469 1.00622 0.94955 1.70020 1.46862 1.43775 0.98395 0.86163 0.79356 0.81245 0.77986 1.20694 1.24380 1.17547 1.21353 0.92870 0.93858 0.85896 1.22710 0.98312 0.96964 0.98853 1.22405 0.94534 0.98263 0.99744 1.22219 0.97881 0.95768 0.99459 1.22509 0.97955 0.96079 1.00652 1.20950 0.94029 1.00234 0.98229 1.21207 0.93642 1.00025 0.97635 0.71985 0.83534 0.83525 0.90137 0.94298 0.93203 0.90088 0.94807 0.91796 0.89537 0.92128 0.90421 0.94515 0.90907 0.93873 0.88512 0.85911 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.32 19.25 74.32 1.43 -1.89 16 2 C -0.19 -5.52 13.24 30.01 0.40 -5.13 16 3 C -0.02 -0.63 5.72 -21.41 -0.12 -0.75 16 4 C -0.10 -2.81 9.75 22.52 0.22 -2.59 16 5 C -0.11 -3.33 9.68 22.23 0.22 -3.11 16 6 C -0.08 -3.06 5.47 -19.81 -0.11 -3.17 16 7 C 0.16 6.52 4.63 85.63 0.40 6.92 16 8 N -0.60 -26.33 2.00 -678.31 -1.36 -27.69 16 9 C -0.22 -12.14 8.19 84.03 0.69 -11.45 16 10 H 0.04 2.30 7.09 -2.91 -0.02 2.28 16 11 C -0.01 -0.77 5.27 84.86 0.45 -0.33 16 12 N -0.95 -58.49 13.97 21.65 0.30 -58.19 16 13 Si 0.92 45.18 25.18 68.60 1.73 46.90 16 14 H -0.28 -13.24 6.65 99.48 0.66 -12.58 16 15 H -0.31 -15.94 7.11 99.48 0.71 -15.23 16 16 H -0.25 -11.55 7.11 99.48 0.71 -10.84 16 17 C 0.17 5.97 3.42 45.72 0.16 6.13 16 18 C -0.13 -4.47 6.43 31.69 0.20 -4.26 16 19 C -0.11 -3.15 6.91 31.91 0.22 -2.93 16 20 C -0.12 -3.62 6.83 31.67 0.22 -3.41 16 21 C -0.13 -4.66 6.25 31.32 0.20 -4.46 16 22 C -0.12 -4.76 9.68 22.23 0.22 -4.54 16 23 C -0.11 -3.90 9.75 22.52 0.22 -3.68 16 24 H 0.26 2.72 7.80 -4.42 -0.03 2.69 16 25 H 0.15 3.34 8.06 -2.91 -0.02 3.32 16 26 H 0.15 3.61 8.06 -2.91 -0.02 3.58 16 27 H 0.08 2.73 7.84 -2.39 -0.02 2.71 16 28 H 0.04 1.77 3.38 -2.39 -0.01 1.76 16 29 H 0.26 15.36 8.31 -92.71 -0.77 14.59 16 30 H 0.08 2.46 7.81 -2.39 -0.02 2.44 16 31 H 0.03 1.45 6.65 -2.39 -0.02 1.44 16 32 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 33 H 0.09 1.96 8.14 -2.39 -0.02 1.94 16 34 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 35 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 36 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 37 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 38 H 0.04 1.84 7.17 -2.39 -0.02 1.83 16 39 H 0.10 4.54 8.06 -2.91 -0.02 4.52 16 40 H 0.12 4.15 8.06 -2.91 -0.02 4.13 16 Total: -1.00 -66.70 329.63 6.62 -60.08 By element: Atomic # 1 Polarization: 16.60 SS G_CDS: 0.96 Total: 17.56 kcal Atomic # 6 Polarization: -43.65 SS G_CDS: 4.99 Total: -38.66 kcal Atomic # 7 Polarization: -84.82 SS G_CDS: -1.06 Total: -85.88 kcal Atomic # 14 Polarization: 45.18 SS G_CDS: 1.73 Total: 46.90 kcal Total: -66.70 6.62 -60.08 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000278893068.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.639 kcal (2) G-P(sol) polarization free energy of solvation -66.699 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.940 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.623 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.076 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds