Wall clock time and date at job start Mon Mar 30 2020 00:48:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86796 * 120.00248 * 2 1 4 4 H 1.48503 * 109.47188 * 270.00239 * 3 2 1 5 5 H 1.48507 * 109.47055 * 30.00118 * 3 2 1 6 6 H 1.48501 * 109.47519 * 149.99807 * 3 2 1 7 7 C 1.37879 * 120.00047 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99984 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99918 * 0.02562 * 7 2 1 10 10 N 1.46901 * 109.47272 * 184.66550 * 9 7 2 11 11 C 1.46904 * 111.00097 * 71.28018 * 10 9 7 12 12 C 1.52998 * 109.46982 * 190.00239 * 11 10 9 13 13 C 1.52994 * 109.47111 * 180.02562 * 12 11 10 14 14 C 1.52998 * 109.47438 * 180.02562 * 13 12 11 15 15 C 1.52994 * 109.47438 * 179.97438 * 14 13 12 16 16 F 1.39902 * 109.47505 * 179.97438 * 15 14 13 17 17 C 1.46898 * 111.00163 * 195.23574 * 10 9 7 18 18 C 1.50705 * 109.46857 * 75.57537 * 17 10 9 19 19 C 1.34513 * 125.78802 * 90.00306 * 18 17 10 20 20 C 1.41385 * 106.83918 * 179.97438 * 19 18 17 21 21 C 1.34515 * 106.83866 * 0.02562 * 20 19 18 22 22 O 1.34298 * 108.42387 * 359.73144 * 21 20 19 23 23 H 0.96991 * 119.99837 * 359.97438 * 1 2 3 24 24 H 1.08996 * 109.47275 * 64.65718 * 9 7 2 25 25 H 1.09000 * 109.46871 * 304.66185 * 9 7 2 26 26 H 1.09000 * 109.46778 * 310.00052 * 11 10 9 27 27 H 1.08993 * 109.46965 * 70.00038 * 11 10 9 28 28 H 1.08993 * 109.47187 * 300.00210 * 12 11 10 29 29 H 1.09005 * 109.47045 * 60.00096 * 12 11 10 30 30 H 1.09001 * 109.47562 * 300.00173 * 13 12 11 31 31 H 1.09005 * 109.47547 * 59.99830 * 13 12 11 32 32 H 1.09006 * 109.47099 * 300.00226 * 14 13 12 33 33 H 1.09003 * 109.47549 * 59.99895 * 14 13 12 34 34 H 1.09001 * 109.47562 * 299.99980 * 15 14 13 35 35 H 1.09005 * 109.47096 * 59.99925 * 15 14 13 36 36 H 1.08997 * 109.47017 * 315.57469 * 17 10 9 37 37 H 1.08998 * 109.47140 * 195.57625 * 17 10 9 38 38 H 1.07997 * 126.57998 * 0.02978 * 19 18 17 39 39 H 1.07997 * 126.57946 * 179.97438 * 20 19 18 40 40 H 1.08000 * 125.78506 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6527 0.7001 6 1 3.5468 1.4401 0.7001 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4992 0.0005 10 7 2.2016 -3.6134 0.1138 11 6 2.7844 -3.6734 1.4610 12 6 3.9409 -4.6751 1.4722 13 6 4.5474 -4.7381 2.8753 14 6 5.7043 -5.7393 2.8865 15 6 6.3113 -5.8018 4.2895 16 9 7.3687 -6.7177 4.2998 17 6 1.5633 -4.8881 -0.2409 18 6 1.4093 -4.9733 -1.7376 19 6 2.3104 -5.4888 -2.5930 20 6 1.7604 -5.3668 -3.8898 21 6 0.5565 -4.7837 -3.7492 22 8 0.3466 -4.5527 -2.4430 23 1 -0.4849 0.8400 0.0004 24 1 0.6888 -2.5941 -0.9284 25 1 0.5629 -2.5214 0.8456 26 1 3.1552 -2.6873 1.7406 27 1 2.0223 -3.9903 2.1727 28 1 3.5701 -5.6612 1.1924 29 1 4.7031 -4.3581 0.7603 30 1 4.9181 -3.7521 3.1556 31 1 3.7851 -5.0553 3.5869 32 1 5.3340 -6.7255 2.6061 33 1 6.4666 -5.4217 2.1750 34 1 6.6817 -4.8156 4.5694 35 1 5.5492 -6.1192 5.0013 36 1 0.5817 -4.9461 0.2294 37 1 2.1828 -5.7142 0.1083 38 1 3.2694 -5.9149 -2.3381 39 1 2.2194 -5.6808 -4.8156 40 1 -0.1277 -4.5462 -4.5505 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000284196466.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:48:33 Heat of formation + Delta-G solvation = -53.299895 kcal Electronic energy + Delta-G solvation = -20329.367446 eV Core-core repulsion = 17059.580726 eV Total energy + Delta-G solvation = -3269.786720 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.153 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -47.70257 -42.02377 -37.41230 -35.09628 -32.72332 -32.40488 -30.85134 -29.61972 -27.00983 -25.60770 -24.00720 -22.14438 -21.23801 -20.98396 -20.54678 -19.54745 -16.96109 -16.54341 -16.40717 -15.85590 -15.60344 -15.12852 -15.07579 -14.69658 -14.31705 -14.10204 -13.70662 -13.12884 -12.51072 -12.34252 -12.26729 -12.16990 -12.09440 -11.81332 -11.56742 -11.31234 -11.24407 -10.92414 -10.81369 -10.73222 -10.64201 -10.30376 -10.13712 -9.80761 -9.44825 -9.21620 -8.42259 -7.98446 -7.34346 -6.01499 -4.02920 2.24044 3.08132 3.31962 3.37966 3.41097 3.53007 4.38238 4.44887 4.63908 4.80866 4.96558 5.02631 5.16517 5.22068 5.33633 5.40959 5.46748 5.50973 5.58338 5.63679 5.75720 5.83904 5.94641 5.97382 6.07283 6.13575 6.23829 6.30554 6.36982 6.57216 6.61256 6.71632 6.96989 7.25469 7.31424 7.67152 7.80141 8.08277 8.14400 8.50148 9.04803 9.60910 11.09139 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.010340 B = 0.005536 C = 0.003846 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2707.311289 B = 5057.037223 C = 7278.193727 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.055 3.945 3 Si 0.896 3.104 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.505 4.505 8 H 0.063 0.937 9 C 0.190 3.810 10 N -0.532 5.532 11 C 0.065 3.935 12 C -0.117 4.117 13 C -0.117 4.117 14 C -0.151 4.151 15 C 0.059 3.941 16 F -0.224 7.224 17 C 0.125 3.875 18 C 0.023 3.977 19 C -0.211 4.211 20 C -0.218 4.218 21 C -0.049 4.049 22 O -0.170 6.170 23 H 0.261 0.739 24 H 0.032 0.968 25 H -0.004 1.004 26 H 0.088 0.912 27 H 0.021 0.979 28 H 0.056 0.944 29 H 0.070 0.930 30 H 0.068 0.932 31 H 0.062 0.938 32 H 0.071 0.929 33 H 0.074 0.926 34 H 0.074 0.926 35 H 0.072 0.928 36 H 0.042 0.958 37 H 0.093 0.907 38 H 0.141 0.859 39 H 0.141 0.859 40 H 0.195 0.805 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.358 -12.227 2.184 13.953 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.146 4.146 3 Si 0.724 3.276 4 H -0.207 1.207 5 H -0.213 1.213 6 H -0.199 1.199 7 C -0.543 4.543 8 H 0.081 0.919 9 C 0.066 3.934 10 N -0.257 5.257 11 C -0.063 4.063 12 C -0.155 4.155 13 C -0.155 4.155 14 C -0.189 4.189 15 C 0.004 3.996 16 F -0.205 7.205 17 C -0.003 4.003 18 C -0.028 4.028 19 C -0.231 4.231 20 C -0.238 4.238 21 C -0.118 4.118 22 O -0.065 6.065 23 H 0.070 0.930 24 H 0.051 0.949 25 H 0.014 0.986 26 H 0.106 0.894 27 H 0.039 0.961 28 H 0.074 0.926 29 H 0.089 0.911 30 H 0.086 0.914 31 H 0.081 0.919 32 H 0.090 0.910 33 H 0.093 0.907 34 H 0.092 0.908 35 H 0.091 0.909 36 H 0.060 0.940 37 H 0.111 0.889 38 H 0.159 0.841 39 H 0.158 0.842 40 H 0.212 0.788 Dipole moment (debyes) X Y Z Total from point charges 6.336 -11.892 1.998 13.622 hybrid contribution -0.105 0.797 0.196 0.828 sum 6.231 -11.095 2.193 12.912 Atomic orbital electron populations 1.69967 1.06039 1.26698 1.51048 1.24983 0.94835 0.99233 0.95520 0.86526 0.79694 0.83205 0.78140 1.20673 1.21340 1.19855 1.21126 0.93487 0.89786 1.49936 0.91873 1.19817 0.89809 0.87249 0.96570 1.62121 1.36126 1.01986 1.25444 1.21987 0.94846 1.00207 0.89254 1.21661 0.98701 0.99300 0.95823 1.21470 0.96669 0.99014 0.98380 1.22176 0.99218 1.01264 0.96249 1.22079 0.86813 0.91609 0.99107 1.92749 1.60159 1.69808 1.97833 1.20546 0.98626 0.95295 0.85877 1.22412 0.86439 0.99180 0.94761 1.21388 1.01047 1.08456 0.92183 1.21707 0.96683 1.06879 0.98502 1.23879 0.99655 1.04372 0.83860 1.84086 1.40115 1.64244 1.18054 0.92968 0.94948 0.98595 0.89398 0.96064 0.92556 0.91102 0.91365 0.91877 0.90990 0.90743 0.90774 0.90922 0.94021 0.88900 0.84082 0.84151 0.78838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.82 13.29 55.43 0.74 -26.08 16 2 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 3 Si 0.90 21.69 29.54 -169.99 -5.02 16.67 16 4 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 5 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 6 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 7 C -0.50 -14.15 8.37 -34.44 -0.29 -14.44 16 8 H 0.06 1.76 7.68 -52.49 -0.40 1.35 16 9 C 0.19 4.96 4.55 -4.97 -0.02 4.94 16 10 N -0.53 -11.13 4.38 -237.52 -1.04 -12.17 16 11 C 0.06 1.16 4.81 -3.82 -0.02 1.14 16 12 C -0.12 -1.59 5.19 -26.73 -0.14 -1.73 16 13 C -0.12 -1.28 5.21 -26.74 -0.14 -1.42 16 14 C -0.15 -1.47 5.67 -26.74 -0.15 -1.62 16 15 C 0.06 0.53 7.55 37.15 0.28 0.81 16 16 F -0.22 -2.62 17.36 2.25 0.04 -2.58 16 17 C 0.12 2.24 5.38 -4.97 -0.03 2.21 16 18 C 0.02 0.44 6.23 -35.62 -0.22 0.22 16 19 C -0.21 -3.54 10.81 -39.70 -0.43 -3.97 16 20 C -0.22 -3.37 10.91 -39.70 -0.43 -3.80 16 21 C -0.05 -0.79 12.09 29.42 0.36 -0.44 16 22 O -0.17 -3.36 9.99 5.72 0.06 -3.30 16 23 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 24 H 0.03 0.93 6.81 -51.93 -0.35 0.57 16 25 H 0.00 -0.11 8.06 -51.93 -0.42 -0.52 16 26 H 0.09 1.74 7.15 -51.93 -0.37 1.37 16 27 H 0.02 0.37 8.12 -51.93 -0.42 -0.05 16 28 H 0.06 0.71 6.25 -51.93 -0.32 0.38 16 29 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 30 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 33 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.04 0.76 8.00 -51.93 -0.42 0.35 16 37 H 0.09 1.37 5.88 -51.93 -0.31 1.07 16 38 H 0.14 2.08 8.06 -52.49 -0.42 1.65 16 39 H 0.14 1.74 8.06 -52.49 -0.42 1.32 16 40 H 0.19 2.32 8.06 -52.49 -0.42 1.89 16 LS Contribution 335.53 15.07 5.06 5.06 Total: -1.00 -31.59 335.53 -7.88 -39.47 By element: Atomic # 1 Polarization: 5.94 SS G_CDS: -6.38 Total: -0.44 kcal Atomic # 6 Polarization: -15.29 SS G_CDS: -1.33 Total: -16.62 kcal Atomic # 7 Polarization: -37.95 SS G_CDS: -0.30 Total: -38.25 kcal Atomic # 8 Polarization: -3.36 SS G_CDS: 0.06 Total: -3.30 kcal Atomic # 9 Polarization: -2.62 SS G_CDS: 0.04 Total: -2.58 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.67 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -31.59 -7.88 -39.47 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000284196466.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.826 kcal (2) G-P(sol) polarization free energy of solvation -31.595 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.421 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.879 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.474 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.300 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds