Wall clock time and date at job start Mon Mar 30 2020 00:48:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86796 * 120.00248 * 2 1 4 4 H 1.48503 * 109.47188 * 270.00239 * 3 2 1 5 5 H 1.48507 * 109.47055 * 30.00118 * 3 2 1 6 6 H 1.48501 * 109.47519 * 149.99807 * 3 2 1 7 7 C 1.37879 * 120.00047 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99984 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99918 * 0.02562 * 7 2 1 10 10 N 1.46901 * 109.47272 * 184.66550 * 9 7 2 11 11 C 1.46904 * 111.00097 * 71.28018 * 10 9 7 12 12 C 1.52998 * 109.46982 * 190.00239 * 11 10 9 13 13 C 1.52994 * 109.47111 * 180.02562 * 12 11 10 14 14 C 1.52998 * 109.47438 * 180.02562 * 13 12 11 15 15 C 1.52994 * 109.47438 * 179.97438 * 14 13 12 16 16 F 1.39902 * 109.47505 * 179.97438 * 15 14 13 17 17 C 1.46898 * 111.00163 * 195.23574 * 10 9 7 18 18 C 1.50705 * 109.46857 * 75.57537 * 17 10 9 19 19 C 1.34513 * 125.78802 * 90.00306 * 18 17 10 20 20 C 1.41385 * 106.83918 * 179.97438 * 19 18 17 21 21 C 1.34515 * 106.83866 * 0.02562 * 20 19 18 22 22 O 1.34298 * 108.42387 * 359.73144 * 21 20 19 23 23 H 0.96991 * 119.99837 * 359.97438 * 1 2 3 24 24 H 1.08996 * 109.47275 * 64.65718 * 9 7 2 25 25 H 1.09000 * 109.46871 * 304.66185 * 9 7 2 26 26 H 1.09000 * 109.46778 * 310.00052 * 11 10 9 27 27 H 1.08993 * 109.46965 * 70.00038 * 11 10 9 28 28 H 1.08993 * 109.47187 * 300.00210 * 12 11 10 29 29 H 1.09005 * 109.47045 * 60.00096 * 12 11 10 30 30 H 1.09001 * 109.47562 * 300.00173 * 13 12 11 31 31 H 1.09005 * 109.47547 * 59.99830 * 13 12 11 32 32 H 1.09006 * 109.47099 * 300.00226 * 14 13 12 33 33 H 1.09003 * 109.47549 * 59.99895 * 14 13 12 34 34 H 1.09001 * 109.47562 * 299.99980 * 15 14 13 35 35 H 1.09005 * 109.47096 * 59.99925 * 15 14 13 36 36 H 1.08997 * 109.47017 * 315.57469 * 17 10 9 37 37 H 1.08998 * 109.47140 * 195.57625 * 17 10 9 38 38 H 1.07997 * 126.57998 * 0.02978 * 19 18 17 39 39 H 1.07997 * 126.57946 * 179.97438 * 20 19 18 40 40 H 1.08000 * 125.78506 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6527 0.7001 6 1 3.5468 1.4401 0.7001 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4992 0.0005 10 7 2.2016 -3.6134 0.1138 11 6 2.7844 -3.6734 1.4610 12 6 3.9409 -4.6751 1.4722 13 6 4.5474 -4.7381 2.8753 14 6 5.7043 -5.7393 2.8865 15 6 6.3113 -5.8018 4.2895 16 9 7.3687 -6.7177 4.2998 17 6 1.5633 -4.8881 -0.2409 18 6 1.4093 -4.9733 -1.7376 19 6 2.3104 -5.4888 -2.5930 20 6 1.7604 -5.3668 -3.8898 21 6 0.5565 -4.7837 -3.7492 22 8 0.3466 -4.5527 -2.4430 23 1 -0.4849 0.8400 0.0004 24 1 0.6888 -2.5941 -0.9284 25 1 0.5629 -2.5214 0.8456 26 1 3.1552 -2.6873 1.7406 27 1 2.0223 -3.9903 2.1727 28 1 3.5701 -5.6612 1.1924 29 1 4.7031 -4.3581 0.7603 30 1 4.9181 -3.7521 3.1556 31 1 3.7851 -5.0553 3.5869 32 1 5.3340 -6.7255 2.6061 33 1 6.4666 -5.4217 2.1750 34 1 6.6817 -4.8156 4.5694 35 1 5.5492 -6.1192 5.0013 36 1 0.5817 -4.9461 0.2294 37 1 2.1828 -5.7142 0.1083 38 1 3.2694 -5.9149 -2.3381 39 1 2.2194 -5.6808 -4.8156 40 1 -0.1277 -4.5462 -4.5505 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000284196466.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:48:33 Heat of formation + Delta-G solvation = -71.993345 kcal Electronic energy + Delta-G solvation = -20330.178055 eV Core-core repulsion = 17059.580726 eV Total energy + Delta-G solvation = -3270.597329 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.153 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -48.51057 -43.35648 -38.92211 -36.19754 -34.74170 -33.80154 -32.02508 -31.10904 -28.77914 -26.79896 -25.65050 -23.51109 -22.52778 -22.08730 -21.86773 -20.98629 -18.61348 -18.17853 -17.32737 -17.07008 -16.86676 -16.55223 -16.22103 -15.97006 -15.65529 -15.54619 -15.22828 -14.52692 -14.03534 -13.85679 -13.60007 -13.50597 -13.23813 -13.15573 -12.98968 -12.80127 -12.59603 -12.56915 -12.29486 -12.05448 -11.87461 -11.55327 -11.40471 -11.35592 -11.18910 -10.72279 -10.60105 -9.32382 -9.05525 -8.19865 -6.30328 0.90651 1.39465 1.41190 1.52113 1.81994 2.27949 2.39728 3.12375 3.28335 3.75665 3.88129 3.92825 4.03013 4.12434 4.24181 4.25337 4.27489 4.43033 4.46994 4.51104 4.61218 4.63819 4.91580 4.96997 4.98446 5.01103 5.05724 5.11154 5.16953 5.24615 5.30959 5.32851 5.46942 5.52862 5.65366 5.75958 6.06073 6.29782 6.40432 6.56004 6.86035 7.39135 8.90945 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.010340 B = 0.005536 C = 0.003846 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2707.311289 B = 5057.037223 C = 7278.193727 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C 0.002 3.998 3 Si 0.967 3.033 4 H -0.276 1.276 5 H -0.281 1.281 6 H -0.261 1.261 7 C -0.519 4.519 8 H 0.062 0.938 9 C 0.209 3.791 10 N -0.538 5.538 11 C 0.065 3.935 12 C -0.104 4.104 13 C -0.111 4.111 14 C -0.145 4.145 15 C 0.055 3.945 16 F -0.239 7.239 17 C 0.127 3.873 18 C -0.017 4.017 19 C -0.204 4.204 20 C -0.220 4.220 21 C -0.060 4.060 22 O -0.206 6.206 23 H 0.263 0.737 24 H -0.001 1.001 25 H -0.036 1.036 26 H 0.062 0.938 27 H 0.023 0.977 28 H 0.072 0.928 29 H 0.063 0.937 30 H 0.066 0.934 31 H 0.073 0.927 32 H 0.076 0.924 33 H 0.069 0.931 34 H 0.085 0.915 35 H 0.090 0.910 36 H 0.029 0.971 37 H 0.129 0.871 38 H 0.163 0.837 39 H 0.174 0.826 40 H 0.228 0.772 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.144 -12.880 1.980 15.366 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.196 4.196 3 Si 0.792 3.208 4 H -0.202 1.202 5 H -0.207 1.207 6 H -0.185 1.185 7 C -0.557 4.557 8 H 0.080 0.920 9 C 0.083 3.917 10 N -0.262 5.262 11 C -0.063 4.063 12 C -0.142 4.142 13 C -0.149 4.149 14 C -0.183 4.183 15 C 0.001 3.999 16 F -0.221 7.221 17 C 0.000 4.000 18 C -0.068 4.068 19 C -0.224 4.224 20 C -0.238 4.238 21 C -0.127 4.127 22 O -0.103 6.103 23 H 0.072 0.928 24 H 0.017 0.983 25 H -0.018 1.018 26 H 0.081 0.919 27 H 0.041 0.959 28 H 0.090 0.910 29 H 0.082 0.918 30 H 0.084 0.916 31 H 0.092 0.908 32 H 0.095 0.905 33 H 0.088 0.912 34 H 0.103 0.897 35 H 0.108 0.892 36 H 0.048 0.952 37 H 0.147 0.853 38 H 0.181 0.819 39 H 0.192 0.808 40 H 0.244 0.756 Dipole moment (debyes) X Y Z Total from point charges 8.145 -12.570 1.800 15.086 hybrid contribution -0.700 0.945 0.204 1.194 sum 7.444 -11.625 2.005 13.949 Atomic orbital electron populations 1.70104 1.07787 1.27789 1.51926 1.25909 0.95684 1.03148 0.94879 0.85414 0.78704 0.78349 0.78350 1.20177 1.20684 1.18526 1.21421 0.93525 0.90948 1.49796 0.91978 1.19378 0.89805 0.89062 0.93453 1.62041 1.34744 1.02045 1.27369 1.22040 0.96188 1.00352 0.87684 1.21543 0.96665 0.98392 0.97590 1.21389 0.97307 0.99502 0.96674 1.22080 0.98492 1.00939 0.96756 1.22217 0.86798 0.91928 0.99005 1.92720 1.61010 1.70467 1.97869 1.20653 0.98520 0.94679 0.86170 1.22657 0.87379 1.01439 0.95286 1.21775 1.01219 1.06962 0.92474 1.22138 0.96295 1.06154 0.99258 1.24722 1.00908 1.03798 0.83252 1.84058 1.41189 1.65238 1.19819 0.92777 0.98316 1.01822 0.91924 0.95866 0.90980 0.91846 0.91555 0.90790 0.90524 0.91190 0.89656 0.89199 0.95237 0.85309 0.81924 0.80829 0.75606 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.43 13.29 21.45 0.28 -57.15 16 2 C 0.00 0.09 5.46 84.65 0.46 0.55 16 3 Si 0.97 44.76 29.54 68.60 2.03 46.78 16 4 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 5 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 6 H -0.26 -11.46 7.11 99.48 0.71 -10.75 16 7 C -0.52 -29.86 8.37 25.60 0.21 -29.64 16 8 H 0.06 3.51 7.68 -2.91 -0.02 3.48 16 9 C 0.21 11.44 4.55 85.56 0.39 11.83 16 10 N -0.54 -22.98 4.38 -905.37 -3.96 -26.94 16 11 C 0.06 2.32 4.81 86.30 0.41 2.73 16 12 C -0.10 -2.67 5.19 30.59 0.16 -2.51 16 13 C -0.11 -2.18 5.21 30.59 0.16 -2.02 16 14 C -0.14 -2.47 5.67 30.59 0.17 -2.30 16 15 C 0.06 0.87 7.55 71.98 0.54 1.41 16 16 F -0.24 -5.16 17.36 44.97 0.78 -4.38 16 17 C 0.13 4.61 5.38 85.56 0.46 5.08 16 18 C -0.02 -0.66 6.23 24.83 0.15 -0.50 16 19 C -0.20 -6.55 10.81 22.19 0.24 -6.31 16 20 C -0.22 -6.32 10.91 22.19 0.24 -6.08 16 21 C -0.06 -1.87 12.09 66.97 0.81 -1.06 16 22 O -0.21 -8.37 9.99 -2.46 -0.02 -8.39 16 23 H 0.26 15.19 8.31 -92.71 -0.77 14.42 16 24 H 0.00 -0.08 6.81 -2.39 -0.02 -0.09 16 25 H -0.04 -2.14 8.06 -2.39 -0.02 -2.16 16 26 H 0.06 2.54 7.15 -2.39 -0.02 2.52 16 27 H 0.02 0.81 8.12 -2.39 -0.02 0.79 16 28 H 0.07 1.62 6.25 -2.39 -0.01 1.61 16 29 H 0.06 1.74 8.14 -2.38 -0.02 1.72 16 30 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 31 H 0.07 1.32 8.14 -2.38 -0.02 1.31 16 32 H 0.08 1.25 8.14 -2.38 -0.02 1.23 16 33 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 34 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 35 H 0.09 1.12 8.14 -2.38 -0.02 1.10 16 36 H 0.03 1.13 8.00 -2.39 -0.02 1.11 16 37 H 0.13 3.61 5.88 -2.39 -0.01 3.60 16 38 H 0.16 4.35 8.06 -2.91 -0.02 4.33 16 39 H 0.17 3.71 8.06 -2.91 -0.02 3.68 16 40 H 0.23 5.07 8.06 -2.91 -0.02 5.04 16 Total: -1.00 -70.55 335.53 4.53 -66.02 By element: Atomic # 1 Polarization: 11.88 SS G_CDS: 1.00 Total: 12.88 kcal Atomic # 6 Polarization: -33.25 SS G_CDS: 4.42 Total: -28.83 kcal Atomic # 7 Polarization: -80.41 SS G_CDS: -3.68 Total: -84.09 kcal Atomic # 8 Polarization: -8.37 SS G_CDS: -0.02 Total: -8.39 kcal Atomic # 9 Polarization: -5.16 SS G_CDS: 0.78 Total: -4.38 kcal Atomic # 14 Polarization: 44.76 SS G_CDS: 2.03 Total: 46.78 kcal Total: -70.55 4.53 -66.02 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000284196466.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.972 kcal (2) G-P(sol) polarization free energy of solvation -70.551 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.522 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.529 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.022 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.993 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds