Wall clock time and date at job start Mon Mar 30 2020 01:10:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46904 * 109.46802 * 2 1 4 4 C 1.46895 * 111.00130 * 288.20466 * 3 2 1 5 5 C 1.50700 * 109.47247 * 160.35271 * 4 3 2 6 6 H 1.08003 * 119.99453 * 4.65353 * 5 4 3 7 7 C 1.37872 * 120.00395 * 184.64427 * 5 4 3 8 8 N 1.31521 * 119.99743 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 120.00337 * 180.02562 * 7 5 4 10 10 H 1.48498 * 109.47170 * 59.99889 * 9 7 5 11 11 H 1.48498 * 109.47114 * 180.02562 * 9 7 5 12 12 H 1.48503 * 109.47109 * 300.00181 * 9 7 5 13 13 C 1.46905 * 110.99734 * 164.25214 * 3 2 1 14 14 C 1.50696 * 109.47330 * 293.95640 * 13 3 2 15 15 C 1.39384 * 119.50471 * 270.29489 * 14 13 3 16 16 C 1.36092 * 120.98740 * 180.27817 * 15 14 13 17 17 C 1.40539 * 119.65336 * 359.70825 * 16 15 14 18 18 C 1.40540 * 121.27789 * 180.02562 * 17 16 15 19 19 C 1.36098 * 119.65002 * 180.02562 * 18 17 16 20 20 C 1.39370 * 120.98834 * 359.95493 * 19 18 17 21 21 C 1.36095 * 120.98961 * 0.02562 * 20 19 18 22 22 C 1.40538 * 119.65876 * 0.02562 * 21 20 19 23 23 C 1.36090 * 119.50622 * 89.99853 * 14 13 3 24 24 H 1.09000 * 109.47375 * 299.65513 * 1 2 3 25 25 H 1.09001 * 109.47540 * 59.66495 * 1 2 3 26 26 H 1.09006 * 109.47209 * 179.65815 * 1 2 3 27 27 H 1.09000 * 109.47308 * 240.00294 * 2 1 3 28 28 H 1.08994 * 109.46934 * 120.00181 * 2 1 3 29 29 H 1.08997 * 109.47289 * 280.35922 * 4 3 2 30 30 H 1.09007 * 109.46781 * 40.35787 * 4 3 2 31 31 H 0.97001 * 119.99921 * 179.97438 * 8 7 5 32 32 H 1.08996 * 109.46539 * 173.95182 * 13 3 2 33 33 H 1.09006 * 109.46823 * 53.95834 * 13 3 2 34 34 H 1.08001 * 119.50660 * 359.97438 * 15 14 13 35 35 H 1.07996 * 120.17275 * 179.72588 * 16 15 14 36 36 H 1.07999 * 120.17606 * 0.02562 * 18 17 16 37 37 H 1.07997 * 119.50125 * 179.97438 * 19 18 17 38 38 H 1.07995 * 119.50713 * 180.02562 * 20 19 18 39 39 H 1.08008 * 120.17079 * 180.02562 * 21 20 19 40 40 H 1.07992 * 120.17102 * 0.02562 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3851 0.0000 4 6 1.7911 2.0242 -1.3027 5 6 1.8427 3.5219 -1.1435 6 1 2.1009 3.9547 -0.1882 7 6 1.5605 4.3395 -2.2171 8 7 1.2457 3.8124 -3.3802 9 14 1.6251 6.1959 -2.0198 10 1 2.9929 6.6027 -1.6089 11 1 1.2828 6.8432 -3.3117 12 1 0.6505 6.6177 -0.9818 13 6 3.4396 1.4414 0.3722 14 6 3.6010 1.0040 1.8053 15 6 3.5268 1.9517 2.8247 16 6 3.6739 1.5909 4.1287 17 6 3.8980 0.2427 4.4562 18 6 4.0541 -0.1677 5.7912 19 6 4.2702 -1.4820 6.0706 20 6 4.3386 -2.4304 5.0517 21 6 4.1916 -2.0698 3.7477 22 6 3.9681 -0.7215 3.4200 23 6 3.8110 -0.3111 2.0850 24 1 -0.3634 0.5085 0.8930 25 1 -0.3634 0.5190 -0.8869 26 1 -0.3634 -1.0277 -0.0061 27 1 1.8934 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8899 29 1 2.5630 1.7065 -2.0037 30 1 0.8122 1.7329 -1.6836 31 1 1.0468 4.3876 -4.1355 32 1 3.8041 2.4626 0.2607 33 1 4.0119 0.7784 -0.2767 34 1 3.3549 2.9884 2.5758 35 1 3.6184 2.3368 4.9078 36 1 4.0028 0.5561 6.5912 37 1 4.3903 -1.7947 7.0974 38 1 4.5107 -3.4671 5.3007 39 1 4.2466 -2.8159 2.9686 40 1 3.8618 -1.0348 1.2851 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000299152923.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:10:42 Heat of formation + Delta-G solvation = 39.355885 kcal Electronic energy + Delta-G solvation = -19787.283878 eV Core-core repulsion = 16952.284239 eV Total energy + Delta-G solvation = -2834.999639 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.148 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.28079 -37.60797 -35.77178 -32.81150 -32.46192 -31.14444 -29.64132 -29.23446 -26.85132 -24.84408 -23.18096 -22.54922 -21.88943 -21.57423 -19.69265 -17.22726 -16.76436 -16.40411 -15.89423 -14.89838 -14.75605 -14.51319 -14.14269 -13.79895 -13.57408 -13.41461 -13.22247 -13.10842 -12.63254 -12.19882 -11.79293 -11.73959 -11.32880 -11.26950 -11.07722 -10.85829 -10.84434 -10.65756 -10.62250 -10.48784 -10.23506 -9.83023 -9.63230 -9.23567 -8.41955 -8.34079 -7.74558 -7.23224 -6.01182 -4.02359 0.66025 1.15480 2.18810 3.12560 3.33995 3.38242 3.41014 4.23544 4.44132 4.67265 4.87593 4.94407 5.05651 5.14254 5.18617 5.31815 5.34909 5.44412 5.51053 5.66778 5.73534 5.82745 5.89040 6.03662 6.11927 6.13335 6.21390 6.32374 6.36592 6.39466 6.48548 6.52972 6.62337 6.73301 6.83869 6.93607 6.94798 7.17887 7.26486 7.34556 7.82852 8.13180 8.21251 8.55421 9.04592 9.61550 11.09384 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.027720 B = 0.004332 C = 0.003940 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1009.856100 B = 6461.364883 C = 7104.966784 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.044 3.956 3 N -0.528 5.528 4 C 0.191 3.809 5 C -0.504 4.504 6 H 0.062 0.938 7 C 0.055 3.945 8 N -0.900 5.900 9 Si 0.897 3.103 10 H -0.277 1.277 11 H -0.288 1.288 12 H -0.276 1.276 13 C 0.093 3.907 14 C -0.050 4.050 15 C -0.084 4.084 16 C -0.117 4.117 17 C -0.056 4.056 18 C -0.105 4.105 19 C -0.127 4.127 20 C -0.125 4.125 21 C -0.105 4.105 22 C -0.049 4.049 23 C -0.113 4.113 24 H 0.056 0.944 25 H 0.060 0.940 26 H 0.043 0.957 27 H 0.020 0.980 28 H 0.064 0.936 29 H -0.011 1.011 30 H 0.038 0.962 31 H 0.261 0.739 32 H 0.091 0.909 33 H 0.030 0.970 34 H 0.128 0.872 35 H 0.124 0.876 36 H 0.123 0.877 37 H 0.117 0.883 38 H 0.118 0.882 39 H 0.123 0.877 40 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.688 -10.262 15.150 19.162 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.085 4.085 3 N -0.253 5.253 4 C 0.066 3.934 5 C -0.543 4.543 6 H 0.080 0.920 7 C -0.146 4.146 8 N -0.540 5.540 9 Si 0.725 3.275 10 H -0.203 1.203 11 H -0.214 1.214 12 H -0.202 1.202 13 C -0.034 4.034 14 C -0.051 4.051 15 C -0.102 4.102 16 C -0.135 4.135 17 C -0.056 4.056 18 C -0.123 4.123 19 C -0.145 4.145 20 C -0.143 4.143 21 C -0.123 4.123 22 C -0.049 4.049 23 C -0.132 4.132 24 H 0.075 0.925 25 H 0.079 0.921 26 H 0.062 0.938 27 H 0.038 0.962 28 H 0.082 0.918 29 H 0.006 0.994 30 H 0.056 0.944 31 H 0.071 0.929 32 H 0.110 0.890 33 H 0.048 0.952 34 H 0.146 0.854 35 H 0.142 0.858 36 H 0.141 0.859 37 H 0.135 0.865 38 H 0.136 0.864 39 H 0.141 0.859 40 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 5.359 -9.940 15.282 19.002 hybrid contribution 0.386 0.543 -0.650 0.931 sum 5.745 -9.397 14.632 18.314 Atomic orbital electron populations 1.21725 0.95551 0.99847 1.02823 1.22122 0.96068 0.91067 0.99214 1.62175 1.14249 1.14353 1.34500 1.19808 0.96548 0.94218 0.82831 1.21125 1.46160 0.90644 0.96361 0.91991 1.24979 0.95494 0.98901 0.95216 1.69948 1.47561 1.35320 1.01148 0.86582 0.78502 0.85269 0.77175 1.20294 1.21415 1.20195 1.21060 0.90874 1.01907 0.89586 1.19833 0.95728 0.92935 0.96591 1.20884 0.97092 1.00243 0.92022 1.20985 1.01223 0.94536 0.96793 1.18081 1.00850 0.93606 0.93037 1.21004 0.99802 0.96258 0.95223 1.20758 1.01345 0.93374 0.99047 1.20760 1.01266 0.99342 0.92969 1.21018 0.99735 0.94855 0.96713 1.18060 1.00316 0.93266 0.93239 1.20912 1.01487 0.95906 0.94856 0.92490 0.92069 0.93754 0.96194 0.91809 0.99368 0.94368 0.92908 0.89031 0.95231 0.85422 0.85839 0.85949 0.86467 0.86439 0.85918 0.85989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.52 9.98 37.16 0.37 -2.14 16 2 C 0.04 0.81 5.51 -3.82 -0.02 0.79 16 3 N -0.53 -11.29 4.37 -237.52 -1.04 -12.33 16 4 C 0.19 4.90 4.59 -4.98 -0.02 4.88 16 5 C -0.50 -13.97 8.61 -34.44 -0.30 -14.27 16 6 H 0.06 1.69 7.66 -52.48 -0.40 1.29 16 7 C 0.06 1.55 5.46 -17.82 -0.10 1.45 16 8 N -0.90 -26.60 13.29 55.43 0.74 -25.86 16 9 Si 0.90 21.51 29.54 -169.99 -5.02 16.49 16 10 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 11 H -0.29 -6.88 7.11 56.52 0.40 -6.47 16 12 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 13 C 0.09 1.78 4.92 -4.98 -0.02 1.76 16 14 C -0.05 -0.83 4.92 -104.97 -0.52 -1.35 16 15 C -0.08 -1.31 9.59 -39.93 -0.38 -1.69 16 16 C -0.12 -1.61 9.77 -39.49 -0.39 -2.00 16 17 C -0.06 -0.77 5.74 -106.83 -0.61 -1.38 16 18 C -0.10 -1.21 9.77 -39.48 -0.39 -1.59 16 19 C -0.13 -1.32 9.95 -39.93 -0.40 -1.72 16 20 C -0.13 -1.32 9.95 -39.93 -0.40 -1.72 16 21 C -0.11 -1.26 9.77 -39.49 -0.39 -1.64 16 22 C -0.05 -0.69 5.74 -106.83 -0.61 -1.30 16 23 C -0.11 -1.69 7.50 -39.49 -0.30 -1.98 16 24 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 25 H 0.06 1.20 6.52 -51.93 -0.34 0.86 16 26 H 0.04 0.66 8.14 -51.93 -0.42 0.23 16 27 H 0.02 0.37 8.05 -51.93 -0.42 -0.05 16 28 H 0.06 1.08 5.12 -51.93 -0.27 0.81 16 29 H -0.01 -0.31 8.00 -51.93 -0.42 -0.73 16 30 H 0.04 1.05 6.23 -51.92 -0.32 0.73 16 31 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 32 H 0.09 1.86 7.26 -51.93 -0.38 1.48 16 33 H 0.03 0.55 8.05 -51.93 -0.42 0.13 16 34 H 0.13 1.97 8.06 -52.49 -0.42 1.54 16 35 H 0.12 1.38 8.06 -52.49 -0.42 0.96 16 36 H 0.12 1.12 8.06 -52.49 -0.42 0.70 16 37 H 0.12 0.92 8.06 -52.49 -0.42 0.49 16 38 H 0.12 0.94 8.06 -52.49 -0.42 0.52 16 39 H 0.12 1.23 8.06 -52.48 -0.42 0.80 16 40 H 0.12 1.68 7.71 -52.49 -0.40 1.27 16 LS Contribution 327.81 15.07 4.94 4.94 Total: -1.00 -30.04 327.81 -10.73 -40.77 By element: Atomic # 1 Polarization: 5.78 SS G_CDS: -5.88 Total: -0.10 kcal Atomic # 6 Polarization: -19.45 SS G_CDS: -4.47 Total: -23.92 kcal Atomic # 7 Polarization: -37.89 SS G_CDS: -0.30 Total: -38.19 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -30.04 -10.73 -40.77 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299152923.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.125 kcal (2) G-P(sol) polarization free energy of solvation -30.041 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.729 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.770 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.356 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds