Wall clock time and date at job start Mon Mar 30 2020 01:10:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46904 * 109.46802 * 2 1 4 4 C 1.46895 * 111.00130 * 288.20466 * 3 2 1 5 5 C 1.50700 * 109.47247 * 160.35271 * 4 3 2 6 6 H 1.08003 * 119.99453 * 4.65353 * 5 4 3 7 7 C 1.37872 * 120.00395 * 184.64427 * 5 4 3 8 8 N 1.31521 * 119.99743 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 120.00337 * 180.02562 * 7 5 4 10 10 H 1.48498 * 109.47170 * 59.99889 * 9 7 5 11 11 H 1.48498 * 109.47114 * 180.02562 * 9 7 5 12 12 H 1.48503 * 109.47109 * 300.00181 * 9 7 5 13 13 C 1.46905 * 110.99734 * 164.25214 * 3 2 1 14 14 C 1.50696 * 109.47330 * 293.95640 * 13 3 2 15 15 C 1.39384 * 119.50471 * 270.29489 * 14 13 3 16 16 C 1.36092 * 120.98740 * 180.27817 * 15 14 13 17 17 C 1.40539 * 119.65336 * 359.70825 * 16 15 14 18 18 C 1.40540 * 121.27789 * 180.02562 * 17 16 15 19 19 C 1.36098 * 119.65002 * 180.02562 * 18 17 16 20 20 C 1.39370 * 120.98834 * 359.95493 * 19 18 17 21 21 C 1.36095 * 120.98961 * 0.02562 * 20 19 18 22 22 C 1.40538 * 119.65876 * 0.02562 * 21 20 19 23 23 C 1.36090 * 119.50622 * 89.99853 * 14 13 3 24 24 H 1.09000 * 109.47375 * 299.65513 * 1 2 3 25 25 H 1.09001 * 109.47540 * 59.66495 * 1 2 3 26 26 H 1.09006 * 109.47209 * 179.65815 * 1 2 3 27 27 H 1.09000 * 109.47308 * 240.00294 * 2 1 3 28 28 H 1.08994 * 109.46934 * 120.00181 * 2 1 3 29 29 H 1.08997 * 109.47289 * 280.35922 * 4 3 2 30 30 H 1.09007 * 109.46781 * 40.35787 * 4 3 2 31 31 H 0.97001 * 119.99921 * 179.97438 * 8 7 5 32 32 H 1.08996 * 109.46539 * 173.95182 * 13 3 2 33 33 H 1.09006 * 109.46823 * 53.95834 * 13 3 2 34 34 H 1.08001 * 119.50660 * 359.97438 * 15 14 13 35 35 H 1.07996 * 120.17275 * 179.72588 * 16 15 14 36 36 H 1.07999 * 120.17606 * 0.02562 * 18 17 16 37 37 H 1.07997 * 119.50125 * 179.97438 * 19 18 17 38 38 H 1.07995 * 119.50713 * 180.02562 * 20 19 18 39 39 H 1.08008 * 120.17079 * 180.02562 * 21 20 19 40 40 H 1.07992 * 120.17102 * 0.02562 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3851 0.0000 4 6 1.7911 2.0242 -1.3027 5 6 1.8427 3.5219 -1.1435 6 1 2.1009 3.9547 -0.1882 7 6 1.5605 4.3395 -2.2171 8 7 1.2457 3.8124 -3.3802 9 14 1.6251 6.1959 -2.0198 10 1 2.9929 6.6027 -1.6089 11 1 1.2828 6.8432 -3.3117 12 1 0.6505 6.6177 -0.9818 13 6 3.4396 1.4414 0.3722 14 6 3.6010 1.0040 1.8053 15 6 3.5268 1.9517 2.8247 16 6 3.6739 1.5909 4.1287 17 6 3.8980 0.2427 4.4562 18 6 4.0541 -0.1677 5.7912 19 6 4.2702 -1.4820 6.0706 20 6 4.3386 -2.4304 5.0517 21 6 4.1916 -2.0698 3.7477 22 6 3.9681 -0.7215 3.4200 23 6 3.8110 -0.3111 2.0850 24 1 -0.3634 0.5085 0.8930 25 1 -0.3634 0.5190 -0.8869 26 1 -0.3634 -1.0277 -0.0061 27 1 1.8934 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8899 29 1 2.5630 1.7065 -2.0037 30 1 0.8122 1.7329 -1.6836 31 1 1.0468 4.3876 -4.1355 32 1 3.8041 2.4626 0.2607 33 1 4.0119 0.7784 -0.2767 34 1 3.3549 2.9884 2.5758 35 1 3.6184 2.3368 4.9078 36 1 4.0028 0.5561 6.5912 37 1 4.3903 -1.7947 7.0974 38 1 4.5107 -3.4671 5.3007 39 1 4.2466 -2.8159 2.9686 40 1 3.8618 -1.0348 1.2851 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000299152923.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:10:42 Heat of formation + Delta-G solvation = 23.787262 kcal Electronic energy + Delta-G solvation = -19787.958985 eV Core-core repulsion = 16952.284239 eV Total energy + Delta-G solvation = -2835.674745 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.148 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.31256 -39.02795 -37.02477 -34.76031 -33.64459 -32.40060 -31.13292 -30.31257 -28.62600 -26.33383 -24.59305 -23.99769 -22.99256 -22.69228 -21.32418 -18.60249 -18.20207 -17.70214 -17.03826 -16.79062 -16.17420 -15.71284 -15.57990 -15.25467 -14.85645 -14.57075 -14.35350 -14.23644 -14.15354 -13.74641 -13.26401 -13.13504 -12.92948 -12.80596 -12.58592 -12.44926 -12.32642 -12.11483 -11.97793 -11.84263 -11.66123 -11.43069 -11.25070 -10.80053 -10.57746 -9.41083 -9.03096 -8.71122 -8.18213 -6.27983 -0.32119 0.13574 1.18547 1.41136 1.44299 1.52042 2.11182 2.41500 3.12129 3.18781 3.48519 3.72775 3.84785 4.03136 4.11510 4.17627 4.20825 4.33149 4.39577 4.48172 4.53721 4.63316 4.67282 4.71042 4.77202 4.91456 4.97206 5.02637 5.08578 5.21486 5.23213 5.27850 5.34529 5.39181 5.41316 5.63308 5.67539 5.72589 5.78643 5.98392 6.09588 6.17371 6.38094 6.63510 6.86685 7.41140 8.92191 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.027720 B = 0.004332 C = 0.003940 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1009.856100 B = 6461.364883 C = 7104.966784 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.043 3.957 3 N -0.535 5.535 4 C 0.206 3.794 5 C -0.520 4.520 6 H 0.061 0.939 7 C 0.002 3.998 8 N -0.935 5.935 9 Si 0.967 3.033 10 H -0.267 1.267 11 H -0.283 1.283 12 H -0.269 1.269 13 C 0.100 3.900 14 C -0.069 4.069 15 C -0.110 4.110 16 C -0.108 4.108 17 C -0.073 4.073 18 C -0.114 4.114 19 C -0.122 4.122 20 C -0.119 4.119 21 C -0.120 4.120 22 C -0.066 4.066 23 C -0.112 4.112 24 H 0.053 0.947 25 H 0.033 0.967 26 H 0.078 0.922 27 H 0.017 0.983 28 H 0.085 0.915 29 H -0.041 1.041 30 H 0.015 0.985 31 H 0.264 0.736 32 H 0.069 0.931 33 H 0.028 0.972 34 H 0.118 0.882 35 H 0.148 0.852 36 H 0.146 0.854 37 H 0.150 0.850 38 H 0.148 0.852 39 H 0.138 0.862 40 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.180 -11.302 18.188 22.288 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.085 4.085 3 N -0.259 5.259 4 C 0.080 3.920 5 C -0.558 4.558 6 H 0.079 0.921 7 C -0.195 4.195 8 N -0.576 5.576 9 Si 0.792 3.208 10 H -0.192 1.192 11 H -0.209 1.209 12 H -0.194 1.194 13 C -0.027 4.027 14 C -0.070 4.070 15 C -0.128 4.128 16 C -0.126 4.126 17 C -0.073 4.073 18 C -0.131 4.131 19 C -0.140 4.140 20 C -0.136 4.136 21 C -0.138 4.138 22 C -0.066 4.066 23 C -0.130 4.130 24 H 0.072 0.928 25 H 0.053 0.947 26 H 0.096 0.904 27 H 0.036 0.964 28 H 0.103 0.897 29 H -0.023 1.023 30 H 0.033 0.967 31 H 0.073 0.927 32 H 0.087 0.913 33 H 0.046 0.954 34 H 0.136 0.864 35 H 0.166 0.834 36 H 0.164 0.836 37 H 0.167 0.833 38 H 0.166 0.834 39 H 0.156 0.844 40 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 5.860 -10.994 18.342 22.173 hybrid contribution 0.284 0.696 -1.449 1.632 sum 6.143 -10.298 16.893 20.716 Atomic orbital electron populations 1.21687 0.94824 1.01588 1.01269 1.22216 0.96668 0.89536 1.00031 1.62105 1.16108 1.16134 1.31556 1.19448 0.94188 0.93970 0.84364 1.21430 1.46086 0.91838 0.96438 0.92111 1.25879 0.94891 1.04024 0.94744 1.70079 1.48399 1.37168 1.01969 0.85473 0.78980 0.79050 0.77344 1.19238 1.20876 1.19414 1.20929 0.89293 1.00683 0.91816 1.19558 0.98561 0.94058 0.94823 1.20856 0.99303 0.99707 0.92950 1.21237 0.99518 0.95444 0.96393 1.18390 1.01101 0.93468 0.94309 1.21308 0.99620 0.97564 0.94638 1.21215 0.99236 0.92816 1.00705 1.21199 0.99095 1.01031 0.92313 1.21259 1.00211 0.94168 0.98152 1.18284 1.00869 0.94658 0.92781 1.20978 1.00967 0.95191 0.95901 0.92788 0.94739 0.90356 0.96446 0.89667 1.02291 0.96729 0.92744 0.91294 0.95373 0.86417 0.83397 0.83627 0.83267 0.83435 0.84395 0.85353 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.86 9.98 71.98 0.72 -4.14 16 2 C 0.04 1.64 5.51 86.30 0.48 2.11 16 3 N -0.53 -23.89 4.37 -905.36 -3.96 -27.85 16 4 C 0.21 11.22 4.59 85.56 0.39 11.61 16 5 C -0.52 -29.92 8.61 25.60 0.22 -29.70 16 6 H 0.06 3.43 7.66 -2.91 -0.02 3.41 16 7 C 0.00 0.14 5.46 84.65 0.46 0.60 16 8 N -0.94 -56.96 13.29 21.45 0.28 -56.67 16 9 Si 0.97 44.82 29.54 68.60 2.03 46.84 16 10 H -0.27 -11.89 7.11 99.48 0.71 -11.19 16 11 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 12 H -0.27 -12.09 7.11 99.48 0.71 -11.39 16 13 C 0.10 4.03 4.92 85.55 0.42 4.45 16 14 C -0.07 -2.35 4.92 -20.09 -0.10 -2.45 16 15 C -0.11 -3.49 9.59 22.05 0.21 -3.28 16 16 C -0.11 -2.86 9.77 22.33 0.22 -2.64 16 17 C -0.07 -1.86 5.74 -21.30 -0.12 -1.98 16 18 C -0.11 -2.22 9.77 22.33 0.22 -2.00 16 19 C -0.12 -2.00 9.95 22.04 0.22 -1.78 16 20 C -0.12 -2.02 9.95 22.04 0.22 -1.80 16 21 C -0.12 -2.54 9.77 22.33 0.22 -2.32 16 22 C -0.07 -1.76 5.74 -21.30 -0.12 -1.89 16 23 C -0.11 -3.31 7.50 22.33 0.17 -3.14 16 24 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 25 H 0.03 1.39 6.52 -2.39 -0.02 1.38 16 26 H 0.08 2.23 8.14 -2.38 -0.02 2.21 16 27 H 0.02 0.66 8.05 -2.39 -0.02 0.64 16 28 H 0.09 2.86 5.12 -2.39 -0.01 2.85 16 29 H -0.04 -2.38 8.00 -2.39 -0.02 -2.40 16 30 H 0.01 0.86 6.23 -2.38 -0.01 0.84 16 31 H 0.26 15.14 8.31 -92.71 -0.77 14.37 16 32 H 0.07 3.01 7.26 -2.39 -0.02 2.99 16 33 H 0.03 1.11 8.05 -2.38 -0.02 1.09 16 34 H 0.12 3.83 8.06 -2.91 -0.02 3.81 16 35 H 0.15 3.02 8.06 -2.91 -0.02 3.00 16 36 H 0.15 2.09 8.06 -2.91 -0.02 2.07 16 37 H 0.15 1.50 8.06 -2.91 -0.02 1.48 16 38 H 0.15 1.61 8.06 -2.91 -0.02 1.59 16 39 H 0.14 2.39 8.06 -2.91 -0.02 2.37 16 40 H 0.13 3.49 7.71 -2.91 -0.02 3.46 16 Total: -1.00 -66.83 327.81 3.18 -63.65 By element: Atomic # 1 Polarization: 11.37 SS G_CDS: 1.01 Total: 12.38 kcal Atomic # 6 Polarization: -42.16 SS G_CDS: 3.82 Total: -38.35 kcal Atomic # 7 Polarization: -80.85 SS G_CDS: -3.67 Total: -84.52 kcal Atomic # 14 Polarization: 44.82 SS G_CDS: 2.03 Total: 46.84 kcal Total: -66.83 3.18 -63.65 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299152923.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.436 kcal (2) G-P(sol) polarization free energy of solvation -66.828 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.609 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.179 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.649 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.787 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds