Wall clock time and date at job start Mon Mar 30 2020 01:11:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 S 1.81396 * 109.47230 * 2 1 4 4 C 1.81391 * 103.00387 * 179.97438 * 3 2 1 5 5 H 1.08999 * 110.01637 * 306.39550 * 4 3 2 6 6 C 1.54276 * 110.07192 * 67.80764 * 4 3 2 7 7 C 1.54884 * 104.19427 * 142.92095 * 6 4 3 8 8 C 1.55013 * 102.75588 * 322.04312 * 7 6 4 9 9 C 1.53871 * 110.03778 * 184.99905 * 4 3 2 10 10 H 1.09002 * 110.03196 * 359.97438 * 9 4 3 11 11 N 1.46900 * 110.03420 * 121.38340 * 9 4 3 12 12 C 1.46899 * 111.00021 * 204.25416 * 11 9 4 13 13 C 1.52998 * 109.47100 * 184.91601 * 12 11 9 14 14 C 1.50705 * 115.54831 * 65.11448 * 13 12 11 15 15 H 1.08001 * 119.99513 * 268.04758 * 14 13 12 16 16 C 1.37870 * 120.00203 * 88.04859 * 14 13 12 17 17 N 1.31513 * 119.99987 * 176.20921 * 16 14 13 18 18 Si 1.86801 * 119.99983 * 356.21294 * 16 14 13 19 19 H 1.48499 * 109.47188 * 92.15848 * 18 16 14 20 20 H 1.48504 * 109.47237 * 212.15833 * 18 16 14 21 21 H 1.48502 * 109.46908 * 332.15618 * 18 16 14 22 22 C 1.52996 * 117.50137 * 279.44192 * 13 12 11 23 23 C 1.53001 * 117.49694 * 210.78006 * 13 12 11 24 24 H 1.09004 * 109.47191 * 180.02562 * 1 2 3 25 25 H 1.09005 * 109.47104 * 299.99776 * 1 2 3 26 26 H 1.08997 * 109.47543 * 59.99920 * 1 2 3 27 27 H 1.08996 * 109.47284 * 240.00164 * 2 1 3 28 28 H 1.09002 * 109.46930 * 119.99737 * 2 1 3 29 29 H 1.09003 * 110.48387 * 261.59941 * 6 4 3 30 30 H 1.08998 * 110.48365 * 24.24059 * 6 4 3 31 31 H 1.09001 * 110.76194 * 80.37717 * 7 6 4 32 32 H 1.08999 * 110.75363 * 203.74647 * 7 6 4 33 33 H 1.09000 * 110.51033 * 279.29845 * 8 7 6 34 34 H 1.09007 * 110.52494 * 156.61785 * 8 7 6 35 35 H 1.00902 * 110.99747 * 328.20767 * 11 9 4 36 36 H 1.08998 * 109.47164 * 64.91816 * 12 11 9 37 37 H 1.08998 * 109.47252 * 304.91819 * 12 11 9 38 38 H 0.97001 * 120.00177 * 180.02562 * 17 16 14 39 39 H 1.09004 * 117.49837 * 359.97438 * 22 13 12 40 40 H 1.08997 * 117.50017 * 145.01966 * 22 13 12 41 41 H 1.09005 * 117.49722 * 214.97433 * 23 13 12 42 42 H 1.08998 * 117.50409 * 359.97438 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1347 1.7102 0.0000 4 6 3.9370 1.5059 0.0008 5 1 4.2389 0.8601 0.8254 6 6 4.4020 0.9022 -1.3406 7 6 5.7465 1.6140 -1.6318 8 6 5.4808 3.0606 -1.1423 9 6 4.6231 2.8774 0.1268 10 1 3.8730 3.6660 0.1871 11 7 5.4787 2.9043 1.3207 12 6 5.6797 4.2805 1.7934 13 6 6.6706 4.2798 2.9591 14 6 8.0736 3.8471 2.6192 15 1 8.3582 2.8101 2.7200 16 6 8.9938 4.7749 2.1797 17 7 10.2376 4.4118 1.9544 18 14 8.4739 6.5479 1.9042 19 1 8.7138 7.3321 3.1422 20 1 9.2651 7.1283 0.7896 21 1 7.0296 6.5927 1.5618 22 6 6.1331 3.9102 4.3430 23 6 6.5044 5.3615 4.0283 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 4.5529 -0.1730 -1.2432 30 1 3.6784 1.1171 -2.1269 31 1 6.5567 1.1566 -1.0640 32 1 5.9666 1.6020 -2.6992 33 1 4.9310 3.6240 -1.8963 34 1 6.4187 3.5604 -0.8999 35 1 5.0975 2.3228 2.0519 36 1 4.7273 4.6931 2.1264 37 1 6.0752 4.8898 0.9807 38 1 10.8851 5.0646 1.6455 39 1 5.0733 3.6680 4.4232 40 1 6.7943 3.3545 5.0078 41 1 7.4098 5.7598 4.4862 42 1 5.6894 6.0740 3.9010 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000300381111.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:11:59 Heat of formation + Delta-G solvation = 11.801877 kcal Electronic energy + Delta-G solvation = -19020.258472 eV Core-core repulsion = 16319.507952 eV Total energy + Delta-G solvation = -2700.750519 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.151 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -38.49586 -36.86550 -33.20181 -32.88276 -31.92981 -28.78251 -27.56892 -25.67664 -23.95435 -23.58185 -21.56908 -20.70081 -19.53007 -18.81510 -16.65516 -16.33604 -15.88756 -15.26008 -15.02198 -14.82091 -14.30238 -13.86522 -13.77243 -13.18525 -12.92262 -12.74675 -12.58363 -12.50176 -11.84984 -11.73988 -11.51220 -11.21528 -11.06802 -11.00262 -10.83417 -10.76338 -10.47948 -10.41484 -10.35549 -9.97062 -9.82925 -9.50850 -8.96058 -8.45354 -8.41611 -7.73045 -7.65606 -5.97869 -3.96445 1.61593 2.52226 3.35204 3.44462 3.48549 4.48528 4.52176 4.60219 4.71746 4.74601 4.79564 5.09732 5.16276 5.20567 5.30230 5.48128 5.50380 5.52999 5.55980 5.60362 5.77051 5.82500 5.84085 5.90609 6.03833 6.07659 6.14797 6.22970 6.26324 6.27962 6.48672 6.52595 6.54701 6.67077 6.78234 7.12952 7.24505 7.75706 7.84029 8.04244 8.66152 9.08227 9.66227 11.14863 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.025065 B = 0.005048 C = 0.004592 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1116.810863 B = 5544.998487 C = 6095.563051 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.090 4.090 3 S -0.269 6.269 4 C -0.053 4.053 5 H 0.094 0.906 6 C -0.116 4.116 7 C -0.113 4.113 8 C -0.112 4.112 9 C 0.107 3.893 10 H 0.045 0.955 11 N -0.654 5.654 12 C 0.099 3.901 13 C 0.010 3.990 14 C -0.459 4.459 15 H 0.078 0.922 16 C 0.074 3.926 17 N -0.904 5.904 18 Si 0.876 3.124 19 H -0.282 1.282 20 H -0.296 1.296 21 H -0.261 1.261 22 C -0.184 4.184 23 C -0.203 4.203 24 H 0.068 0.932 25 H 0.063 0.937 26 H 0.063 0.937 27 H 0.079 0.921 28 H 0.078 0.922 29 H 0.064 0.936 30 H 0.074 0.926 31 H 0.078 0.922 32 H 0.063 0.937 33 H 0.059 0.941 34 H 0.086 0.914 35 H 0.334 0.666 36 H 0.003 0.997 37 H 0.069 0.931 38 H 0.261 0.739 39 H 0.067 0.933 40 H 0.085 0.915 41 H 0.087 0.913 42 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.231 -6.906 -5.706 18.539 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.238 4.238 3 S -0.041 6.041 4 C -0.182 4.182 5 H 0.113 0.887 6 C -0.155 4.155 7 C -0.152 4.152 8 C -0.151 4.151 9 C -0.005 4.005 10 H 0.063 0.937 11 N -0.285 5.285 12 C -0.030 4.030 13 C 0.008 3.992 14 C -0.497 4.497 15 H 0.096 0.904 16 C -0.127 4.127 17 N -0.542 5.542 18 Si 0.705 3.295 19 H -0.208 1.208 20 H -0.223 1.223 21 H -0.185 1.185 22 C -0.221 4.221 23 C -0.241 4.241 24 H 0.086 0.914 25 H 0.082 0.918 26 H 0.082 0.918 27 H 0.098 0.902 28 H 0.097 0.903 29 H 0.082 0.918 30 H 0.093 0.907 31 H 0.096 0.904 32 H 0.081 0.919 33 H 0.078 0.922 34 H 0.104 0.896 35 H 0.152 0.848 36 H 0.021 0.979 37 H 0.087 0.913 38 H 0.071 0.929 39 H 0.085 0.915 40 H 0.104 0.896 41 H 0.106 0.894 42 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -16.095 -5.929 -6.106 18.207 hybrid contribution -0.353 0.126 0.359 0.519 sum -16.449 -5.803 -5.747 18.365 Atomic orbital electron populations 1.21507 0.92533 1.02268 1.03077 1.23262 0.99861 0.95939 1.04779 1.86924 1.06716 1.12547 1.97944 1.24080 0.91165 1.01194 1.01800 0.88726 1.22723 0.98405 0.99353 0.95060 1.22427 0.96587 0.95735 1.00436 1.22417 1.00782 0.96991 0.94938 1.21897 0.92399 0.92681 0.93500 0.93705 1.60437 1.49369 1.11839 1.06841 1.21784 0.94950 0.88183 0.98054 1.19416 0.96408 0.97677 0.85656 1.20140 0.90076 0.96311 1.43157 0.90408 1.24917 0.94566 0.98307 0.94880 1.69896 1.02679 1.34746 1.46917 0.86912 0.79235 0.85831 0.77517 1.20808 1.22293 1.18548 1.22796 0.98665 0.97754 1.02900 1.22981 1.01669 0.91611 1.07876 0.91352 0.91795 0.91814 0.90222 0.90288 0.91761 0.90745 0.90368 0.91869 0.92207 0.89561 0.84779 0.97945 0.91256 0.92874 0.91469 0.89606 0.89437 0.91287 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.08 9.92 37.16 0.37 -0.71 16 2 C -0.09 -0.85 6.55 37.16 0.24 -0.61 16 3 S -0.27 -3.40 20.69 -107.50 -2.22 -5.62 16 4 C -0.05 -0.71 3.09 -25.61 -0.08 -0.79 16 5 H 0.09 1.29 7.48 -51.93 -0.39 0.90 16 6 C -0.12 -1.38 6.26 -25.07 -0.16 -1.54 16 7 C -0.11 -1.53 6.91 -24.67 -0.17 -1.70 16 8 C -0.11 -1.74 6.43 -25.00 -0.16 -1.90 16 9 C 0.11 1.68 2.92 -66.59 -0.19 1.49 16 10 H 0.05 0.75 7.33 -51.93 -0.38 0.37 16 11 N -0.65 -12.09 6.13 -105.55 -0.65 -12.73 16 12 C 0.10 2.06 4.90 -3.83 -0.02 2.04 16 13 C 0.01 0.22 0.99 -155.66 -0.15 0.07 16 14 C -0.46 -12.66 9.32 -34.44 -0.32 -12.99 16 15 H 0.08 2.38 8.06 -52.49 -0.42 1.96 16 16 C 0.07 2.12 5.47 -17.82 -0.10 2.02 16 17 N -0.90 -27.60 13.96 55.43 0.77 -26.83 16 18 Si 0.88 21.84 24.91 -169.99 -4.23 17.61 16 19 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 20 H -0.30 -7.45 7.11 56.52 0.40 -7.05 16 21 H -0.26 -6.16 5.72 56.52 0.32 -5.84 16 22 C -0.18 -3.75 9.96 -26.69 -0.27 -4.01 16 23 C -0.20 -4.38 7.64 -26.69 -0.20 -4.59 16 24 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 25 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 26 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 28 H 0.08 0.73 8.14 -51.92 -0.42 0.30 16 29 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.07 0.85 7.81 -51.93 -0.41 0.44 16 31 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 32 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 34 H 0.09 1.58 7.75 -51.93 -0.40 1.18 16 35 H 0.33 5.86 8.08 -39.29 -0.32 5.54 16 36 H 0.00 0.05 8.09 -51.93 -0.42 -0.37 16 37 H 0.07 1.55 6.25 -51.93 -0.32 1.22 16 38 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 39 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 40 H 0.09 1.78 8.14 -51.93 -0.42 1.36 16 41 H 0.09 1.99 7.30 -51.93 -0.38 1.61 16 42 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 LS Contribution 340.15 15.07 5.13 5.13 Total: -1.00 -29.27 340.15 -10.15 -39.41 By element: Atomic # 1 Polarization: 13.99 SS G_CDS: -7.73 Total: 6.26 kcal Atomic # 6 Polarization: -22.01 SS G_CDS: -1.21 Total: -23.23 kcal Atomic # 7 Polarization: -39.68 SS G_CDS: 0.13 Total: -39.56 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -4.23 Total: 17.61 kcal Atomic # 16 Polarization: -3.40 SS G_CDS: -2.22 Total: -5.62 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -29.27 -10.15 -39.41 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000300381111.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.216 kcal (2) G-P(sol) polarization free energy of solvation -29.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.949 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.147 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.414 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.802 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds