Wall clock time and date at job start Mon Mar 30 2020 01:11:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 S 1.81396 * 109.47230 * 2 1 4 4 C 1.81391 * 103.00387 * 179.97438 * 3 2 1 5 5 H 1.08999 * 110.01637 * 306.39550 * 4 3 2 6 6 C 1.54276 * 110.07192 * 67.80764 * 4 3 2 7 7 C 1.54884 * 104.19427 * 142.92095 * 6 4 3 8 8 C 1.55013 * 102.75588 * 322.04312 * 7 6 4 9 9 C 1.53871 * 110.03778 * 184.99905 * 4 3 2 10 10 H 1.09002 * 110.03196 * 359.97438 * 9 4 3 11 11 N 1.46900 * 110.03420 * 121.38340 * 9 4 3 12 12 C 1.46899 * 111.00021 * 204.25416 * 11 9 4 13 13 C 1.52998 * 109.47100 * 184.91601 * 12 11 9 14 14 C 1.50705 * 115.54831 * 65.11448 * 13 12 11 15 15 H 1.08001 * 119.99513 * 268.04758 * 14 13 12 16 16 C 1.37870 * 120.00203 * 88.04859 * 14 13 12 17 17 N 1.31513 * 119.99987 * 176.20921 * 16 14 13 18 18 Si 1.86801 * 119.99983 * 356.21294 * 16 14 13 19 19 H 1.48499 * 109.47188 * 92.15848 * 18 16 14 20 20 H 1.48504 * 109.47237 * 212.15833 * 18 16 14 21 21 H 1.48502 * 109.46908 * 332.15618 * 18 16 14 22 22 C 1.52996 * 117.50137 * 279.44192 * 13 12 11 23 23 C 1.53001 * 117.49694 * 210.78006 * 13 12 11 24 24 H 1.09004 * 109.47191 * 180.02562 * 1 2 3 25 25 H 1.09005 * 109.47104 * 299.99776 * 1 2 3 26 26 H 1.08997 * 109.47543 * 59.99920 * 1 2 3 27 27 H 1.08996 * 109.47284 * 240.00164 * 2 1 3 28 28 H 1.09002 * 109.46930 * 119.99737 * 2 1 3 29 29 H 1.09003 * 110.48387 * 261.59941 * 6 4 3 30 30 H 1.08998 * 110.48365 * 24.24059 * 6 4 3 31 31 H 1.09001 * 110.76194 * 80.37717 * 7 6 4 32 32 H 1.08999 * 110.75363 * 203.74647 * 7 6 4 33 33 H 1.09000 * 110.51033 * 279.29845 * 8 7 6 34 34 H 1.09007 * 110.52494 * 156.61785 * 8 7 6 35 35 H 1.00902 * 110.99747 * 328.20767 * 11 9 4 36 36 H 1.08998 * 109.47164 * 64.91816 * 12 11 9 37 37 H 1.08998 * 109.47252 * 304.91819 * 12 11 9 38 38 H 0.97001 * 120.00177 * 180.02562 * 17 16 14 39 39 H 1.09004 * 117.49837 * 359.97438 * 22 13 12 40 40 H 1.08997 * 117.50017 * 145.01966 * 22 13 12 41 41 H 1.09005 * 117.49722 * 214.97433 * 23 13 12 42 42 H 1.08998 * 117.50409 * 359.97438 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1347 1.7102 0.0000 4 6 3.9370 1.5059 0.0008 5 1 4.2389 0.8601 0.8254 6 6 4.4020 0.9022 -1.3406 7 6 5.7465 1.6140 -1.6318 8 6 5.4808 3.0606 -1.1423 9 6 4.6231 2.8774 0.1268 10 1 3.8730 3.6660 0.1871 11 7 5.4787 2.9043 1.3207 12 6 5.6797 4.2805 1.7934 13 6 6.6706 4.2798 2.9591 14 6 8.0736 3.8471 2.6192 15 1 8.3582 2.8101 2.7200 16 6 8.9938 4.7749 2.1797 17 7 10.2376 4.4118 1.9544 18 14 8.4739 6.5479 1.9042 19 1 8.7138 7.3321 3.1422 20 1 9.2651 7.1283 0.7896 21 1 7.0296 6.5927 1.5618 22 6 6.1331 3.9102 4.3430 23 6 6.5044 5.3615 4.0283 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 4.5529 -0.1730 -1.2432 30 1 3.6784 1.1171 -2.1269 31 1 6.5567 1.1566 -1.0640 32 1 5.9666 1.6020 -2.6992 33 1 4.9310 3.6240 -1.8963 34 1 6.4187 3.5604 -0.8999 35 1 5.0975 2.3228 2.0519 36 1 4.7273 4.6931 2.1264 37 1 6.0752 4.8898 0.9807 38 1 10.8851 5.0646 1.6455 39 1 5.0733 3.6680 4.4232 40 1 6.7943 3.3545 5.0078 41 1 7.4098 5.7598 4.4862 42 1 5.6894 6.0740 3.9010 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000300381111.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:11:58 Heat of formation + Delta-G solvation = -5.236212 kcal Electronic energy + Delta-G solvation = -19020.997299 eV Core-core repulsion = 16319.507952 eV Total energy + Delta-G solvation = -2701.489346 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.151 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.82655 -38.47723 -34.58168 -34.06700 -33.62595 -29.91056 -28.93842 -27.64906 -25.48819 -24.36105 -23.26371 -21.80058 -20.80690 -20.65135 -18.30215 -17.66635 -17.26561 -16.66480 -16.27691 -15.87474 -15.62838 -15.23429 -15.08906 -14.76946 -14.53407 -14.42443 -13.64424 -13.51916 -13.31115 -13.05856 -12.76323 -12.47105 -12.42074 -12.29441 -12.13749 -12.07912 -11.91656 -11.84847 -11.80176 -11.52071 -11.43300 -10.85842 -10.76379 -10.55520 -10.23955 -9.12935 -8.67002 -8.20036 -6.21852 0.69198 1.36046 1.39191 1.50804 1.61883 2.42155 3.04661 3.15417 3.44763 3.51061 3.62635 4.04519 4.05043 4.12437 4.19833 4.36273 4.39561 4.42505 4.45545 4.51177 4.53390 4.54492 4.71236 4.77645 4.82462 4.85480 4.88676 4.92759 4.96301 5.03870 5.09814 5.17495 5.23327 5.27395 5.42713 5.47882 5.54133 5.78930 6.27198 6.43791 6.63149 6.84184 7.44169 8.96658 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.025065 B = 0.005048 C = 0.004592 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1116.810863 B = 5544.998487 C = 6095.563051 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.081 4.081 3 S -0.297 6.297 4 C -0.046 4.046 5 H 0.090 0.910 6 C -0.105 4.105 7 C -0.111 4.111 8 C -0.115 4.115 9 C 0.108 3.892 10 H 0.040 0.960 11 N -0.668 5.668 12 C 0.111 3.889 13 C -0.017 4.017 14 C -0.452 4.452 15 H 0.030 0.970 16 C 0.018 3.982 17 N -0.956 5.956 18 Si 0.935 3.065 19 H -0.274 1.274 20 H -0.301 1.301 21 H -0.238 1.238 22 C -0.163 4.163 23 C -0.200 4.200 24 H 0.090 0.910 25 H 0.057 0.943 26 H 0.062 0.938 27 H 0.091 0.909 28 H 0.083 0.917 29 H 0.080 0.920 30 H 0.086 0.914 31 H 0.055 0.945 32 H 0.081 0.919 33 H 0.075 0.925 34 H 0.049 0.951 35 H 0.339 0.661 36 H 0.023 0.977 37 H 0.049 0.951 38 H 0.261 0.739 39 H 0.100 0.900 40 H 0.076 0.924 41 H 0.072 0.928 42 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.336 -6.994 -6.018 21.425 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.229 4.229 3 S -0.070 6.070 4 C -0.175 4.175 5 H 0.108 0.892 6 C -0.144 4.144 7 C -0.149 4.149 8 C -0.154 4.154 9 C -0.003 4.003 10 H 0.058 0.942 11 N -0.300 5.300 12 C -0.019 4.019 13 C -0.018 4.018 14 C -0.490 4.490 15 H 0.048 0.952 16 C -0.178 4.178 17 N -0.597 5.597 18 Si 0.761 3.239 19 H -0.199 1.199 20 H -0.229 1.229 21 H -0.161 1.161 22 C -0.201 4.201 23 C -0.237 4.237 24 H 0.109 0.891 25 H 0.076 0.924 26 H 0.081 0.919 27 H 0.110 0.890 28 H 0.102 0.898 29 H 0.099 0.901 30 H 0.104 0.896 31 H 0.074 0.926 32 H 0.099 0.901 33 H 0.094 0.906 34 H 0.068 0.932 35 H 0.158 0.842 36 H 0.041 0.959 37 H 0.067 0.933 38 H 0.070 0.930 39 H 0.119 0.881 40 H 0.094 0.906 41 H 0.090 0.910 42 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -19.230 -6.025 -6.406 21.146 hybrid contribution 0.600 0.018 0.487 0.773 sum -18.630 -6.007 -5.920 20.450 Atomic orbital electron populations 1.21519 0.91333 1.03567 1.02733 1.23369 1.00689 0.93278 1.05596 1.87019 1.05943 1.15967 1.98032 1.23911 0.91765 0.99405 1.02442 0.89156 1.22677 0.97247 0.99989 0.94505 1.22383 0.97006 0.94423 1.01129 1.22417 0.99232 0.98189 0.95592 1.21897 0.92004 0.94208 0.92176 0.94229 1.60354 1.50884 1.10928 1.07843 1.21507 0.94858 0.89214 0.96290 1.19325 0.94623 1.00160 0.87670 1.20255 0.92750 0.94082 1.41881 0.95163 1.25698 0.94376 1.02754 0.94991 1.70051 1.04154 1.36282 1.49213 0.85960 0.80017 0.80567 0.77400 1.19931 1.22867 1.16077 1.22811 1.00247 0.96846 1.00156 1.23014 1.02019 0.92443 1.06262 0.89136 0.92371 0.91942 0.89031 0.89835 0.90104 0.89558 0.92602 0.90058 0.90605 0.93197 0.84237 0.95929 0.93265 0.93011 0.88148 0.90560 0.90990 0.88472 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.74 9.92 71.98 0.71 -1.02 16 2 C -0.08 -1.30 6.55 71.98 0.47 -0.83 16 3 S -0.30 -6.85 20.69 -56.49 -1.17 -8.02 16 4 C -0.05 -1.15 3.09 31.32 0.10 -1.05 16 5 H 0.09 2.32 7.48 -2.39 -0.02 2.31 16 6 C -0.10 -2.26 6.26 31.67 0.20 -2.06 16 7 C -0.11 -2.90 6.91 31.93 0.22 -2.68 16 8 C -0.12 -3.55 6.43 31.71 0.20 -3.35 16 9 C 0.11 3.32 2.92 45.64 0.13 3.45 16 10 H 0.04 1.27 7.33 -2.39 -0.02 1.26 16 11 N -0.67 -24.47 6.13 -487.84 -2.99 -27.47 16 12 C 0.11 4.46 4.90 86.30 0.42 4.88 16 13 C -0.02 -0.75 0.99 -52.93 -0.05 -0.80 16 14 C -0.45 -25.68 9.32 25.60 0.24 -25.44 16 15 H 0.03 1.95 8.06 -2.91 -0.02 1.93 16 16 C 0.02 1.03 5.47 84.65 0.46 1.49 16 17 N -0.96 -60.81 13.96 21.44 0.30 -60.51 16 18 Si 0.93 45.43 24.91 68.60 1.71 47.14 16 19 H -0.27 -12.86 7.11 99.48 0.71 -12.15 16 20 H -0.30 -14.81 7.11 99.48 0.71 -14.10 16 21 H -0.24 -10.56 5.72 99.48 0.57 -9.99 16 22 C -0.16 -6.33 9.96 30.62 0.30 -6.02 16 23 C -0.20 -8.13 7.64 30.62 0.23 -7.89 16 24 H 0.09 0.81 8.14 -2.39 -0.02 0.80 16 25 H 0.06 0.83 8.14 -2.38 -0.02 0.81 16 26 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 27 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 28 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 29 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 30 H 0.09 1.70 7.81 -2.39 -0.02 1.68 16 31 H 0.06 1.70 8.14 -2.39 -0.02 1.69 16 32 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 33 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 34 H 0.05 1.89 7.75 -2.38 -0.02 1.87 16 35 H 0.34 11.60 8.08 -89.69 -0.72 10.88 16 36 H 0.02 0.83 8.09 -2.39 -0.02 0.81 16 37 H 0.05 2.16 6.25 -2.39 -0.01 2.15 16 38 H 0.26 15.70 8.31 -92.71 -0.77 14.93 16 39 H 0.10 3.24 8.14 -2.38 -0.02 3.23 16 40 H 0.08 3.09 8.14 -2.39 -0.02 3.07 16 41 H 0.07 3.16 7.30 -2.38 -0.02 3.14 16 42 H 0.10 3.43 8.14 -2.39 -0.02 3.41 16 Total: -1.00 -65.41 340.15 1.60 -63.81 By element: Atomic # 1 Polarization: 26.28 SS G_CDS: 0.11 Total: 26.38 kcal Atomic # 6 Polarization: -44.99 SS G_CDS: 3.65 Total: -41.34 kcal Atomic # 7 Polarization: -85.28 SS G_CDS: -2.69 Total: -87.97 kcal Atomic # 14 Polarization: 45.43 SS G_CDS: 1.71 Total: 47.14 kcal Atomic # 16 Polarization: -6.85 SS G_CDS: -1.17 Total: -8.02 kcal Total: -65.41 1.60 -63.81 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000300381111.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.576 kcal (2) G-P(sol) polarization free energy of solvation -65.415 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.839 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.602 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.812 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.236 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds