Wall clock time and date at job start Mon Mar 30 2020 01:06:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09003 * 109.47161 * 2 1 4 4 N 1.46903 * 109.47147 * 119.99883 * 2 1 3 5 5 C 1.46901 * 110.99774 * 278.51544 * 4 2 1 6 6 C 1.53007 * 109.47009 * 174.45821 * 5 4 2 7 7 C 1.50705 * 115.55977 * 39.64367 * 6 5 4 8 8 H 1.08000 * 120.00065 * 260.54727 * 7 6 5 9 9 C 1.37878 * 119.99808 * 80.54381 * 7 6 5 10 10 N 1.31519 * 120.00226 * 1.91897 * 9 7 6 11 11 Si 1.86798 * 119.99811 * 181.92255 * 9 7 6 12 12 H 1.48494 * 109.47126 * 359.97438 * 11 9 7 13 13 H 1.48500 * 109.47393 * 120.00289 * 11 9 7 14 14 H 1.48507 * 109.47022 * 239.99841 * 11 9 7 15 15 C 1.52991 * 117.50005 * 185.33440 * 6 5 4 16 16 C 1.52996 * 60.03296 * 107.47982 * 15 6 5 17 17 C 1.53001 * 109.47298 * 239.99897 * 2 1 3 18 18 C 1.52579 * 109.22421 * 295.67144 * 17 2 1 19 19 C 1.53102 * 109.95625 * 169.00324 * 18 17 2 20 20 S 1.81750 * 108.83937 * 63.02013 * 19 18 17 21 21 C 1.81742 * 102.22386 * 306.73606 * 20 19 18 22 22 C 1.52578 * 109.22653 * 174.43124 * 17 2 1 23 23 H 1.09004 * 109.47016 * 299.99842 * 1 2 3 24 24 H 1.08993 * 109.47491 * 60.00159 * 1 2 3 25 25 H 1.08999 * 109.46741 * 180.02562 * 1 2 3 26 26 H 1.00901 * 110.99687 * 154.56222 * 4 2 1 27 27 H 1.08996 * 109.47231 * 54.46013 * 5 4 2 28 28 H 1.08996 * 109.47731 * 294.45577 * 5 4 2 29 29 H 0.96993 * 119.99800 * 185.01788 * 10 9 7 30 30 H 1.09002 * 117.49902 * 214.98478 * 15 6 5 31 31 H 1.09009 * 117.49845 * 359.97357 * 15 6 5 32 32 H 1.08999 * 117.49863 * 107.50574 * 16 15 6 33 33 H 1.09004 * 117.49486 * 252.52145 * 16 15 6 34 34 H 1.09001 * 109.21864 * 55.02628 * 17 2 1 35 35 H 1.09005 * 109.38901 * 289.14869 * 18 17 2 36 36 H 1.09001 * 109.39636 * 48.85151 * 18 17 2 37 37 H 1.08994 * 109.57181 * 303.21510 * 19 18 17 38 38 H 1.08999 * 109.57740 * 182.82573 * 19 18 17 39 39 H 1.09005 * 109.57481 * 293.46103 * 21 20 19 40 40 H 1.08992 * 109.68718 * 173.13604 * 21 20 19 41 41 H 1.09006 * 109.39068 * 311.14614 * 22 17 2 42 42 H 1.08996 * 109.39074 * 70.94824 * 22 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0197 -0.6925 1.1995 5 6 2.0037 0.2002 2.3660 6 6 2.3869 -0.5906 3.6186 7 6 3.4898 -1.6015 3.4373 8 1 3.2487 -2.6460 3.3055 9 6 4.8067 -1.1929 3.4395 10 7 5.1020 0.0733 3.6375 11 14 6.1713 -2.4377 3.1611 12 1 5.5794 -3.7854 2.9649 13 1 6.9494 -2.0578 1.9547 14 1 7.0700 -2.4596 4.3431 15 6 2.3071 0.1342 4.9636 16 6 1.2699 -0.9327 4.6077 17 6 2.0401 -0.7213 -1.2492 18 6 1.6191 -2.1867 -1.1903 19 6 1.8763 -2.8589 -2.5416 20 16 3.6616 -2.8302 -2.8810 21 6 4.0628 -1.0688 -2.6825 22 6 3.5594 -0.5980 -1.3154 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 2.9423 -1.0716 1.0468 27 1 1.0043 0.6168 2.4911 28 1 2.7182 1.0092 2.2145 29 1 6.0216 0.3736 3.5670 30 1 3.0524 -0.1200 5.7173 31 1 1.9820 1.1747 4.9561 32 1 1.3326 -1.8888 5.1273 33 1 0.2624 -0.5941 4.3657 34 1 1.6034 -0.2584 -2.1342 35 1 2.1931 -2.6973 -0.4170 36 1 0.5574 -2.2490 -0.9514 37 1 1.3468 -2.3175 -3.3254 38 1 1.5275 -3.8910 -2.5083 39 1 3.5758 -0.4924 -3.4692 40 1 5.1421 -0.9290 -2.7422 41 1 3.8451 0.4429 -1.1633 42 1 4.0067 -1.2137 -0.5351 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309571867.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:06:20 Heat of formation + Delta-G solvation = 3.996507 kcal Electronic energy + Delta-G solvation = -19735.696960 eV Core-core repulsion = 17034.607974 eV Total energy + Delta-G solvation = -2701.088986 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.151 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -38.59727 -36.53442 -33.74693 -31.90206 -31.48025 -29.77922 -26.78090 -25.52177 -24.09833 -22.95652 -21.52408 -20.96960 -19.12114 -18.91797 -16.74865 -16.05088 -15.28737 -14.85783 -14.54702 -14.39370 -13.98540 -13.70773 -13.65578 -13.22501 -12.78494 -12.75999 -12.52485 -12.02651 -11.79477 -11.62709 -11.45073 -11.20019 -11.13760 -10.94603 -10.78312 -10.57342 -10.39612 -10.27933 -10.11110 -9.96108 -9.50185 -9.27112 -8.85345 -8.39334 -8.02595 -7.57660 -7.33675 -6.00242 -4.04732 1.87801 2.62951 3.29449 3.39273 3.44608 4.43019 4.70904 4.80394 4.85042 5.04264 5.11298 5.26380 5.29079 5.33383 5.47623 5.52846 5.64451 5.73442 5.74539 5.85961 5.92586 6.05896 6.16253 6.19641 6.22592 6.33206 6.37779 6.44166 6.60729 6.63388 6.67588 6.82793 6.87145 7.00987 7.17627 7.46581 7.56654 7.91362 8.13630 8.45131 8.56854 8.98734 9.59639 11.07958 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.016100 B = 0.007353 C = 0.005687 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1738.761159 B = 3807.025422 C = 4922.303782 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.086 3.914 3 H 0.032 0.968 4 N -0.666 5.666 5 C 0.108 3.892 6 C 0.052 3.948 7 C -0.477 4.477 8 H 0.061 0.939 9 C 0.067 3.933 10 N -0.882 5.882 11 Si 0.881 3.119 12 H -0.270 1.270 13 H -0.284 1.284 14 H -0.286 1.286 15 C -0.164 4.164 16 C -0.207 4.207 17 C -0.089 4.089 18 C -0.111 4.111 19 C -0.077 4.077 20 S -0.280 6.280 21 C -0.074 4.074 22 C -0.125 4.125 23 H 0.052 0.948 24 H 0.043 0.957 25 H 0.062 0.938 26 H 0.354 0.646 27 H 0.037 0.963 28 H 0.025 0.975 29 H 0.257 0.743 30 H 0.079 0.921 31 H 0.058 0.942 32 H 0.073 0.927 33 H 0.062 0.938 34 H 0.065 0.935 35 H 0.089 0.911 36 H 0.079 0.921 37 H 0.076 0.924 38 H 0.100 0.900 39 H 0.078 0.922 40 H 0.100 0.900 41 H 0.072 0.928 42 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.022 -0.178 -11.667 13.131 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.025 4.025 3 H 0.050 0.950 4 N -0.301 5.301 5 C -0.021 4.021 6 C 0.052 3.948 7 C -0.515 4.515 8 H 0.079 0.921 9 C -0.135 4.135 10 N -0.520 5.520 11 Si 0.708 3.292 12 H -0.195 1.195 13 H -0.210 1.210 14 H -0.213 1.213 15 C -0.203 4.203 16 C -0.245 4.245 17 C -0.108 4.108 18 C -0.150 4.150 19 C -0.226 4.226 20 S -0.054 6.054 21 C -0.222 4.222 22 C -0.164 4.164 23 H 0.071 0.929 24 H 0.062 0.938 25 H 0.081 0.919 26 H 0.176 0.824 27 H 0.055 0.945 28 H 0.043 0.957 29 H 0.067 0.933 30 H 0.097 0.903 31 H 0.076 0.924 32 H 0.091 0.909 33 H 0.080 0.920 34 H 0.084 0.916 35 H 0.108 0.892 36 H 0.097 0.903 37 H 0.095 0.905 38 H 0.118 0.882 39 H 0.097 0.903 40 H 0.119 0.881 41 H 0.090 0.910 42 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -5.771 -1.201 -11.729 13.127 hybrid contribution 0.854 1.131 -0.006 1.417 sum -4.916 -0.070 -11.735 12.724 Atomic orbital electron populations 1.21842 0.95520 1.01956 1.00324 1.21474 0.95260 0.95282 0.90474 0.95028 1.60509 1.32931 1.35270 1.01427 1.21362 0.96608 0.93218 0.90910 1.18803 0.93577 0.96441 0.86018 1.20456 0.88972 0.93122 1.48986 0.92087 1.24976 0.98369 0.95108 0.95022 1.70028 1.18689 1.14449 1.48809 0.86705 0.82470 0.82272 0.77711 1.19480 1.20998 1.21265 1.22540 1.00627 0.93895 1.03188 1.22965 0.93493 0.99356 1.08649 1.21221 0.94857 0.96474 0.98224 1.21731 1.03147 0.94792 0.95315 1.23503 0.93264 1.04778 1.01020 1.86810 1.12299 1.13752 1.92581 1.23395 1.04549 0.93763 1.00482 1.21854 0.95955 1.02436 0.96117 0.92923 0.93752 0.91898 0.82391 0.94470 0.95696 0.93334 0.90261 0.92368 0.90857 0.91975 0.91619 0.89239 0.90254 0.90525 0.88151 0.90338 0.88114 0.90971 0.89628 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.91 9.13 37.16 0.34 -1.58 16 2 C 0.09 1.33 2.30 -67.71 -0.16 1.17 16 3 H 0.03 0.52 7.85 -51.93 -0.41 0.11 16 4 N -0.67 -12.75 5.36 -106.72 -0.57 -13.32 16 5 C 0.11 2.35 5.60 -3.82 -0.02 2.32 16 6 C 0.05 1.26 1.74 -155.62 -0.27 0.99 16 7 C -0.48 -12.48 7.47 -34.44 -0.26 -12.74 16 8 H 0.06 1.64 7.81 -52.49 -0.41 1.23 16 9 C 0.07 1.78 5.44 -17.82 -0.10 1.69 16 10 N -0.88 -24.25 12.92 55.43 0.72 -23.54 16 11 Si 0.88 20.78 29.54 -169.99 -5.02 15.76 16 12 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 13 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 14 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 15 C -0.16 -3.88 9.50 -26.74 -0.25 -4.14 16 16 C -0.21 -4.59 9.89 -26.70 -0.26 -4.86 16 17 C -0.09 -1.18 1.69 -91.05 -0.15 -1.34 16 18 C -0.11 -1.47 4.59 -26.89 -0.12 -1.59 16 19 C -0.08 -0.91 6.45 37.21 0.24 -0.67 16 20 S -0.28 -3.84 22.33 -107.50 -2.40 -6.24 16 21 C -0.07 -0.92 6.45 37.21 0.24 -0.68 16 22 C -0.12 -1.76 4.65 -26.89 -0.12 -1.88 16 23 H 0.05 0.77 7.16 -51.93 -0.37 0.40 16 24 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 25 H 0.06 0.86 6.31 -51.93 -0.33 0.53 16 26 H 0.35 7.39 5.46 -39.29 -0.21 7.17 16 27 H 0.04 0.76 6.89 -51.93 -0.36 0.40 16 28 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.26 6.83 8.32 -40.82 -0.34 6.49 16 30 H 0.08 2.01 8.14 -51.93 -0.42 1.58 16 31 H 0.06 1.30 8.14 -51.92 -0.42 0.88 16 32 H 0.07 1.62 8.14 -51.93 -0.42 1.20 16 33 H 0.06 1.26 8.08 -51.93 -0.42 0.84 16 34 H 0.07 0.79 8.08 -51.93 -0.42 0.37 16 35 H 0.09 1.42 7.58 -51.93 -0.39 1.02 16 36 H 0.08 1.00 6.05 -51.93 -0.31 0.69 16 37 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 38 H 0.10 1.09 8.14 -51.93 -0.42 0.67 16 39 H 0.08 0.86 8.14 -51.92 -0.42 0.43 16 40 H 0.10 1.20 8.14 -51.93 -0.42 0.78 16 41 H 0.07 1.02 8.04 -51.93 -0.42 0.60 16 42 H 0.09 1.44 6.76 -51.93 -0.35 1.09 16 LS Contribution 334.03 15.07 5.03 5.03 Total: -1.00 -26.65 334.03 -10.49 -37.14 By element: Atomic # 1 Polarization: 15.81 SS G_CDS: -7.34 Total: 8.47 kcal Atomic # 6 Polarization: -22.40 SS G_CDS: -0.90 Total: -23.30 kcal Atomic # 7 Polarization: -37.00 SS G_CDS: 0.14 Total: -36.86 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.02 Total: 15.76 kcal Atomic # 16 Polarization: -3.84 SS G_CDS: -2.40 Total: -6.24 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -26.65 -10.49 -37.14 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309571867.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.135 kcal (2) G-P(sol) polarization free energy of solvation -26.647 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.488 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.492 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.139 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.997 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds