Wall clock time and date at job start Mon Mar 30 2020 01:06:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09003 * 109.47161 * 2 1 4 4 N 1.46903 * 109.47147 * 119.99883 * 2 1 3 5 5 C 1.46901 * 110.99774 * 278.51544 * 4 2 1 6 6 C 1.53007 * 109.47009 * 174.45821 * 5 4 2 7 7 C 1.50705 * 115.55977 * 39.64367 * 6 5 4 8 8 H 1.08000 * 120.00065 * 260.54727 * 7 6 5 9 9 C 1.37878 * 119.99808 * 80.54381 * 7 6 5 10 10 N 1.31519 * 120.00226 * 1.91897 * 9 7 6 11 11 Si 1.86798 * 119.99811 * 181.92255 * 9 7 6 12 12 H 1.48494 * 109.47126 * 359.97438 * 11 9 7 13 13 H 1.48500 * 109.47393 * 120.00289 * 11 9 7 14 14 H 1.48507 * 109.47022 * 239.99841 * 11 9 7 15 15 C 1.52991 * 117.50005 * 185.33440 * 6 5 4 16 16 C 1.52996 * 60.03296 * 107.47982 * 15 6 5 17 17 C 1.53001 * 109.47298 * 239.99897 * 2 1 3 18 18 C 1.52579 * 109.22421 * 295.67144 * 17 2 1 19 19 C 1.53102 * 109.95625 * 169.00324 * 18 17 2 20 20 S 1.81750 * 108.83937 * 63.02013 * 19 18 17 21 21 C 1.81742 * 102.22386 * 306.73606 * 20 19 18 22 22 C 1.52578 * 109.22653 * 174.43124 * 17 2 1 23 23 H 1.09004 * 109.47016 * 299.99842 * 1 2 3 24 24 H 1.08993 * 109.47491 * 60.00159 * 1 2 3 25 25 H 1.08999 * 109.46741 * 180.02562 * 1 2 3 26 26 H 1.00901 * 110.99687 * 154.56222 * 4 2 1 27 27 H 1.08996 * 109.47231 * 54.46013 * 5 4 2 28 28 H 1.08996 * 109.47731 * 294.45577 * 5 4 2 29 29 H 0.96993 * 119.99800 * 185.01788 * 10 9 7 30 30 H 1.09002 * 117.49902 * 214.98478 * 15 6 5 31 31 H 1.09009 * 117.49845 * 359.97357 * 15 6 5 32 32 H 1.08999 * 117.49863 * 107.50574 * 16 15 6 33 33 H 1.09004 * 117.49486 * 252.52145 * 16 15 6 34 34 H 1.09001 * 109.21864 * 55.02628 * 17 2 1 35 35 H 1.09005 * 109.38901 * 289.14869 * 18 17 2 36 36 H 1.09001 * 109.39636 * 48.85151 * 18 17 2 37 37 H 1.08994 * 109.57181 * 303.21510 * 19 18 17 38 38 H 1.08999 * 109.57740 * 182.82573 * 19 18 17 39 39 H 1.09005 * 109.57481 * 293.46103 * 21 20 19 40 40 H 1.08992 * 109.68718 * 173.13604 * 21 20 19 41 41 H 1.09006 * 109.39068 * 311.14614 * 22 17 2 42 42 H 1.08996 * 109.39074 * 70.94824 * 22 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0197 -0.6925 1.1995 5 6 2.0037 0.2002 2.3660 6 6 2.3869 -0.5906 3.6186 7 6 3.4898 -1.6015 3.4373 8 1 3.2487 -2.6460 3.3055 9 6 4.8067 -1.1929 3.4395 10 7 5.1020 0.0733 3.6375 11 14 6.1713 -2.4377 3.1611 12 1 5.5794 -3.7854 2.9649 13 1 6.9494 -2.0578 1.9547 14 1 7.0700 -2.4596 4.3431 15 6 2.3071 0.1342 4.9636 16 6 1.2699 -0.9327 4.6077 17 6 2.0401 -0.7213 -1.2492 18 6 1.6191 -2.1867 -1.1903 19 6 1.8763 -2.8589 -2.5416 20 16 3.6616 -2.8302 -2.8810 21 6 4.0628 -1.0688 -2.6825 22 6 3.5594 -0.5980 -1.3154 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 2.9423 -1.0716 1.0468 27 1 1.0043 0.6168 2.4911 28 1 2.7182 1.0092 2.2145 29 1 6.0216 0.3736 3.5670 30 1 3.0524 -0.1200 5.7173 31 1 1.9820 1.1747 4.9561 32 1 1.3326 -1.8888 5.1273 33 1 0.2624 -0.5941 4.3657 34 1 1.6034 -0.2584 -2.1342 35 1 2.1931 -2.6973 -0.4170 36 1 0.5574 -2.2490 -0.9514 37 1 1.3468 -2.3175 -3.3254 38 1 1.5275 -3.8910 -2.5083 39 1 3.5758 -0.4924 -3.4692 40 1 5.1421 -0.9290 -2.7422 41 1 3.8451 0.4429 -1.1633 42 1 4.0067 -1.2137 -0.5351 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309571867.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:06:20 Heat of formation + Delta-G solvation = -8.813894 kcal Electronic energy + Delta-G solvation = -19736.252461 eV Core-core repulsion = 17034.607974 eV Total energy + Delta-G solvation = -2701.644486 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.151 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.86626 -38.27084 -35.10296 -33.94940 -32.52915 -31.11736 -27.86496 -27.53298 -25.71054 -24.00367 -22.87112 -22.64411 -20.96036 -20.18356 -17.96741 -17.78097 -16.73246 -16.60684 -16.11147 -15.57442 -15.36382 -15.22057 -14.74336 -14.64113 -14.23521 -14.00089 -13.78552 -13.38309 -13.21295 -13.07568 -12.94784 -12.85802 -12.63237 -12.48042 -12.29274 -12.25080 -11.94822 -11.74101 -11.47544 -11.13379 -11.06255 -10.83222 -10.54081 -10.34562 -9.89053 -8.92671 -8.64163 -8.06055 -6.14174 0.88182 1.38075 1.43766 1.52990 1.64624 2.44463 3.21966 3.42756 3.63303 3.68520 3.76751 3.91174 4.07781 4.27293 4.27897 4.40767 4.47559 4.54085 4.61033 4.65287 4.70780 4.78350 4.81134 4.85463 4.92194 5.02198 5.02541 5.05763 5.11562 5.14785 5.21568 5.24451 5.30640 5.53615 5.57244 5.66067 5.68175 5.83384 6.45231 6.63445 6.81744 6.94470 7.52153 9.01757 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.016100 B = 0.007353 C = 0.005687 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1738.761159 B = 3807.025422 C = 4922.303782 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.082 3.918 3 H 0.022 0.978 4 N -0.667 5.667 5 C 0.123 3.877 6 C 0.027 3.973 7 C -0.480 4.480 8 H 0.048 0.952 9 C 0.031 3.969 10 N -0.907 5.907 11 Si 0.933 3.067 12 H -0.269 1.269 13 H -0.281 1.281 14 H -0.289 1.289 15 C -0.170 4.170 16 C -0.186 4.186 17 C -0.080 4.080 18 C -0.106 4.106 19 C -0.063 4.063 20 S -0.324 6.324 21 C -0.062 4.062 22 C -0.122 4.122 23 H 0.041 0.959 24 H 0.072 0.928 25 H 0.065 0.935 26 H 0.341 0.659 27 H 0.051 0.949 28 H -0.005 1.005 29 H 0.256 0.744 30 H 0.054 0.946 31 H 0.069 0.931 32 H 0.071 0.929 33 H 0.087 0.913 34 H 0.093 0.907 35 H 0.057 0.943 36 H 0.090 0.910 37 H 0.100 0.900 38 H 0.110 0.890 39 H 0.102 0.898 40 H 0.102 0.898 41 H 0.068 0.932 42 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.546 -0.272 -13.355 15.342 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.028 4.028 3 H 0.040 0.960 4 N -0.300 5.300 5 C -0.007 4.007 6 C 0.026 3.974 7 C -0.518 4.518 8 H 0.066 0.934 9 C -0.169 4.169 10 N -0.546 5.546 11 Si 0.760 3.240 12 H -0.194 1.194 13 H -0.207 1.207 14 H -0.215 1.215 15 C -0.209 4.209 16 C -0.223 4.223 17 C -0.099 4.099 18 C -0.144 4.144 19 C -0.211 4.211 20 S -0.099 6.099 21 C -0.210 4.210 22 C -0.161 4.161 23 H 0.060 0.940 24 H 0.090 0.910 25 H 0.084 0.916 26 H 0.162 0.838 27 H 0.069 0.931 28 H 0.013 0.987 29 H 0.065 0.935 30 H 0.073 0.927 31 H 0.087 0.913 32 H 0.089 0.911 33 H 0.105 0.895 34 H 0.111 0.889 35 H 0.075 0.925 36 H 0.108 0.892 37 H 0.119 0.881 38 H 0.128 0.872 39 H 0.121 0.879 40 H 0.120 0.880 41 H 0.087 0.913 42 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -7.311 -1.303 -13.421 15.338 hybrid contribution 1.298 1.155 0.546 1.821 sum -6.013 -0.149 -12.875 14.211 Atomic orbital electron populations 1.21799 0.93634 1.02396 1.01201 1.21627 0.96607 0.94638 0.89888 0.95994 1.60521 1.32010 1.35121 1.02316 1.21124 0.96247 0.92285 0.91001 1.19002 0.94294 0.96863 0.87223 1.20569 0.89932 0.92955 1.48388 0.93380 1.25479 1.00021 0.96299 0.95083 1.70114 1.18859 1.15697 1.49956 0.85890 0.80227 0.80538 0.77375 1.19380 1.20688 1.21501 1.22438 1.01033 0.94926 1.02456 1.22960 0.94035 0.98613 1.06672 1.21177 0.94141 0.96576 0.97997 1.21634 1.03088 0.94332 0.95371 1.23510 0.91375 1.05652 1.00582 1.86996 1.14935 1.15429 1.92561 1.23360 1.04941 0.92761 0.99903 1.21778 0.96626 1.01497 0.96202 0.94009 0.90957 0.91611 0.83842 0.93055 0.98729 0.93508 0.92696 0.91296 0.91077 0.89452 0.88907 0.92458 0.89180 0.88129 0.87175 0.87937 0.87966 0.91300 0.93038 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.29 9.13 71.98 0.66 -2.63 16 2 C 0.08 2.43 2.30 44.92 0.10 2.54 16 3 H 0.02 0.70 7.85 -2.39 -0.02 0.68 16 4 N -0.67 -25.40 5.36 -491.55 -2.63 -28.04 16 5 C 0.12 5.34 5.60 86.31 0.48 5.82 16 6 C 0.03 1.29 1.74 -52.90 -0.09 1.20 16 7 C -0.48 -25.49 7.47 25.60 0.19 -25.30 16 8 H 0.05 2.63 7.81 -2.91 -0.02 2.60 16 9 C 0.03 1.66 5.44 84.65 0.46 2.12 16 10 N -0.91 -50.92 12.92 21.45 0.28 -50.65 16 11 Si 0.93 43.47 29.54 68.60 2.03 45.50 16 12 H -0.27 -12.40 7.11 99.48 0.71 -11.69 16 13 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 14 H -0.29 -13.50 7.11 99.48 0.71 -12.79 16 15 C -0.17 -8.07 9.50 30.59 0.29 -7.78 16 16 C -0.19 -8.02 9.89 30.62 0.30 -7.71 16 17 C -0.08 -1.97 1.69 -11.07 -0.02 -1.99 16 18 C -0.11 -2.58 4.59 30.49 0.14 -2.44 16 19 C -0.06 -1.32 6.45 72.02 0.46 -0.86 16 20 S -0.32 -8.46 22.33 -56.49 -1.26 -9.72 16 21 C -0.06 -1.43 6.45 72.02 0.46 -0.97 16 22 C -0.12 -3.35 4.65 30.49 0.14 -3.21 16 23 H 0.04 1.12 7.16 -2.38 -0.02 1.11 16 24 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 25 H 0.06 1.60 6.31 -2.39 -0.02 1.58 16 26 H 0.34 14.58 5.46 -89.69 -0.49 14.09 16 27 H 0.05 2.05 6.89 -2.39 -0.02 2.03 16 28 H -0.01 -0.27 8.14 -2.39 -0.02 -0.29 16 29 H 0.26 13.87 8.32 -92.71 -0.77 13.10 16 30 H 0.05 2.83 8.14 -2.39 -0.02 2.81 16 31 H 0.07 3.06 8.14 -2.38 -0.02 3.04 16 32 H 0.07 3.08 8.14 -2.39 -0.02 3.06 16 33 H 0.09 3.32 8.08 -2.38 -0.02 3.30 16 34 H 0.09 1.85 8.08 -2.39 -0.02 1.83 16 35 H 0.06 1.80 7.58 -2.38 -0.02 1.78 16 36 H 0.09 2.03 6.05 -2.39 -0.01 2.01 16 37 H 0.10 1.67 8.14 -2.39 -0.02 1.65 16 38 H 0.11 2.11 8.14 -2.39 -0.02 2.09 16 39 H 0.10 1.91 8.14 -2.38 -0.02 1.89 16 40 H 0.10 2.33 8.14 -2.39 -0.02 2.31 16 41 H 0.07 1.92 8.04 -2.38 -0.02 1.90 16 42 H 0.05 1.77 6.76 -2.39 -0.02 1.76 16 Total: -1.00 -57.53 334.03 2.49 -55.05 By element: Atomic # 1 Polarization: 28.59 SS G_CDS: 0.49 Total: 29.08 kcal Atomic # 6 Polarization: -44.81 SS G_CDS: 3.59 Total: -41.22 kcal Atomic # 7 Polarization: -76.33 SS G_CDS: -2.36 Total: -78.68 kcal Atomic # 14 Polarization: 43.47 SS G_CDS: 2.03 Total: 45.50 kcal Atomic # 16 Polarization: -8.46 SS G_CDS: -1.26 Total: -9.72 kcal Total: -57.53 2.49 -55.05 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309571867.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.233 kcal (2) G-P(sol) polarization free energy of solvation -57.532 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.299 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.485 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.047 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.814 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds