Wall clock time and date at job start Mon Mar 30 2020 00:57:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.47214 * 2 1 4 4 C 1.53003 * 109.46963 * 119.99593 * 2 1 3 5 5 H 1.08996 * 110.39214 * 307.22883 * 4 2 1 6 6 C 1.53709 * 110.33785 * 184.99865 * 4 2 1 7 7 C 1.52949 * 112.48988 * 243.95647 * 6 4 2 8 8 H 1.08995 * 109.60236 * 89.64888 * 7 6 4 9 9 N 1.46906 * 109.59984 * 209.97009 * 7 6 4 10 10 C 1.46903 * 110.99491 * 204.99712 * 9 7 6 11 11 C 1.53007 * 109.46748 * 185.19805 * 10 9 7 12 12 C 1.50695 * 115.55026 * 294.89113 * 11 10 9 13 13 H 1.07998 * 120.00162 * 94.72561 * 12 11 10 14 14 C 1.37875 * 120.00153 * 274.73164 * 12 11 10 15 15 N 1.31520 * 119.99751 * 6.41951 * 14 12 11 16 16 Si 1.86794 * 120.00372 * 186.42666 * 14 12 11 17 17 H 1.48493 * 109.47636 * 89.99455 * 16 14 12 18 18 H 1.48503 * 109.47261 * 209.99689 * 16 14 12 19 19 H 1.48511 * 109.46935 * 329.99416 * 16 14 12 20 20 C 1.53001 * 117.49677 * 80.56197 * 11 10 9 21 21 C 1.52999 * 117.49798 * 149.21748 * 11 10 9 22 22 C 1.55153 * 108.95856 * 329.90010 * 7 6 4 23 23 S 1.83402 * 110.33932 * 69.45800 * 4 2 1 24 24 H 1.09002 * 109.47104 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.46765 * 299.99855 * 1 2 3 26 26 H 1.08994 * 109.46882 * 60.00020 * 1 2 3 27 27 H 1.08997 * 109.47131 * 239.99480 * 2 1 3 28 28 H 1.09005 * 109.47326 * 179.97438 * 3 2 1 29 29 H 1.09001 * 109.47079 * 300.00211 * 3 2 1 30 30 H 1.08997 * 109.47496 * 59.99704 * 3 2 1 31 31 H 1.08996 * 108.88511 * 123.16632 * 6 4 2 32 32 H 1.08995 * 108.77994 * 4.67188 * 6 4 2 33 33 H 1.00890 * 111.00204 * 328.95260 * 9 7 6 34 34 H 1.08998 * 109.47055 * 65.20230 * 10 9 7 35 35 H 1.08996 * 109.47175 * 305.19773 * 10 9 7 36 36 H 0.97001 * 119.99543 * 174.95004 * 15 14 12 37 37 H 1.08994 * 117.49629 * 215.00253 * 20 11 10 38 38 H 1.09000 * 117.49717 * 0.02562 * 20 11 10 39 39 H 1.09004 * 117.49836 * 359.97438 * 21 11 10 40 40 H 1.08998 * 117.49613 * 144.96942 * 21 11 10 41 41 H 1.08998 * 111.12642 * 159.35535 * 22 7 6 42 42 H 1.09006 * 111.13086 * 283.52681 * 22 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 1 1.5838 -0.2987 2.1445 6 6 3.5717 -0.6250 1.3339 7 6 4.2504 -1.9916 1.2294 8 1 4.4569 -2.2184 0.1835 9 7 5.5083 -1.9764 1.9881 10 6 6.4490 -2.9776 1.4677 11 6 7.6914 -3.0222 2.3597 12 6 8.5279 -1.7689 2.3720 13 1 8.3754 -1.0254 3.1404 14 6 9.4880 -1.5712 1.4024 15 7 9.5891 -2.4121 0.3961 16 14 10.6451 -0.1094 1.5179 17 1 11.8558 -0.4958 2.2859 18 1 11.0409 0.3178 0.1518 19 1 9.9583 1.0122 2.2077 20 6 7.5988 -3.8228 3.6603 21 6 8.4219 -4.3605 2.4871 22 6 3.3024 -3.0713 1.8149 23 16 1.6835 -2.5168 1.1390 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 1.8933 -0.5139 -0.8899 28 1 3.1301 1.4425 0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.6767 1.9564 0.8899 31 1 3.8445 -0.1673 2.2847 32 1 3.9288 0.0092 0.5225 33 1 5.9215 -1.0560 1.9848 34 1 6.7403 -2.7092 0.4522 35 1 5.9707 -3.9570 1.4617 36 1 10.2143 -2.2338 -0.3238 37 1 8.1430 -3.4428 4.5248 38 1 6.6530 -4.3180 3.8802 39 1 8.0171 -5.2093 1.9358 40 1 9.5076 -4.3344 2.5793 41 1 3.5626 -4.0638 1.4471 42 1 3.3029 -3.0455 2.9046 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309696942.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:57:10 Heat of formation + Delta-G solvation = -7.521412 kcal Electronic energy + Delta-G solvation = -18949.559870 eV Core-core repulsion = 16247.971430 eV Total energy + Delta-G solvation = -2701.588440 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.151 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.36462 -38.25344 -36.44450 -33.96741 -32.52493 -29.32149 -28.07729 -27.68736 -26.69862 -24.49622 -22.84828 -21.85729 -21.00266 -20.46109 -18.00251 -17.88105 -16.77487 -16.56341 -16.19158 -15.70200 -15.62769 -15.27785 -14.79381 -14.42192 -14.26533 -13.94309 -13.62971 -13.38270 -13.18353 -13.01490 -12.94018 -12.82380 -12.60235 -12.33388 -12.23617 -11.98699 -11.97998 -11.93585 -11.73466 -11.45374 -11.28472 -10.80397 -10.72996 -10.38726 -9.93783 -9.21510 -8.70711 -8.07715 -6.19198 0.89162 1.36653 1.41244 1.44887 1.52544 2.43622 3.20412 3.20974 3.53129 3.68783 3.70979 3.84430 4.07733 4.17188 4.21659 4.36320 4.39551 4.47049 4.60884 4.63736 4.68802 4.74052 4.78905 4.82088 4.90034 4.92569 5.00536 5.01764 5.06993 5.09960 5.17837 5.24296 5.29694 5.43193 5.45185 5.67333 5.68356 5.80891 6.28728 6.48463 6.59372 6.90138 7.49430 8.99615 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.021817 B = 0.004853 C = 0.004179 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1283.093069 B = 5768.824834 C = 6698.938782 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.078 4.078 3 C -0.146 4.146 4 C -0.012 4.012 5 H 0.105 0.895 6 C -0.129 4.129 7 C 0.086 3.914 8 H 0.037 0.963 9 N -0.665 5.665 10 C 0.123 3.877 11 C 0.027 3.973 12 C -0.501 4.501 13 H 0.055 0.945 14 C 0.027 3.973 15 N -0.909 5.909 16 Si 0.946 3.054 17 H -0.282 1.282 18 H -0.288 1.288 19 H -0.265 1.265 20 C -0.177 4.177 21 C -0.170 4.170 22 C -0.046 4.046 23 S -0.323 6.323 24 H 0.046 0.954 25 H 0.063 0.937 26 H 0.068 0.932 27 H 0.068 0.932 28 H 0.057 0.943 29 H 0.068 0.932 30 H 0.065 0.935 31 H 0.085 0.915 32 H 0.088 0.912 33 H 0.346 0.654 34 H 0.004 0.996 35 H 0.045 0.955 36 H 0.258 0.742 37 H 0.072 0.928 38 H 0.085 0.915 39 H 0.069 0.931 40 H 0.055 0.945 41 H 0.093 0.907 42 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.618 5.420 -0.170 16.532 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.098 4.098 3 C -0.205 4.205 4 C -0.141 4.141 5 H 0.123 0.877 6 C -0.167 4.167 7 C -0.026 4.026 8 H 0.055 0.945 9 N -0.297 5.297 10 C -0.007 4.007 11 C 0.027 3.973 12 C -0.539 4.539 13 H 0.073 0.927 14 C -0.174 4.174 15 N -0.547 5.547 16 Si 0.772 3.228 17 H -0.208 1.208 18 H -0.214 1.214 19 H -0.189 1.189 20 C -0.214 4.214 21 C -0.208 4.208 22 C -0.194 4.194 23 S -0.096 6.096 24 H 0.065 0.935 25 H 0.082 0.918 26 H 0.087 0.913 27 H 0.087 0.913 28 H 0.076 0.924 29 H 0.087 0.913 30 H 0.084 0.916 31 H 0.104 0.896 32 H 0.106 0.894 33 H 0.165 0.835 34 H 0.022 0.978 35 H 0.064 0.936 36 H 0.067 0.933 37 H 0.090 0.910 38 H 0.104 0.896 39 H 0.087 0.913 40 H 0.074 0.926 41 H 0.111 0.889 42 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -16.689 4.303 -0.178 17.235 hybrid contribution 2.368 1.237 -0.617 2.742 sum -14.321 5.540 -0.795 15.376 Atomic orbital electron populations 1.21820 0.93950 1.01571 1.02724 1.21173 0.96758 0.96419 0.95484 1.21943 1.01258 0.94318 1.02932 1.23750 0.96773 0.90984 1.02605 0.87699 1.22246 0.93167 0.96571 1.04745 1.22372 0.91047 0.94139 0.95084 0.94531 1.60521 1.04147 1.10536 1.54464 1.21191 0.91089 0.93460 0.94955 1.18889 0.93674 0.90818 0.93940 1.20685 1.17121 1.04082 1.12024 0.92722 1.25642 0.98025 0.98369 0.95321 1.70105 1.37456 1.37259 1.09881 0.85758 0.79614 0.80392 0.77026 1.20845 1.21368 1.18922 1.22840 1.00189 1.05789 0.92560 1.22450 0.96828 0.98686 1.02839 1.24310 0.90705 1.01031 1.03401 1.87696 1.26694 1.09493 1.85696 0.93468 0.91834 0.91304 0.91335 0.92447 0.91301 0.91592 0.89622 0.89378 0.83498 0.97772 0.93644 0.93315 0.90976 0.89621 0.91283 0.92650 0.88856 0.88533 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.38 9.08 71.98 0.65 -1.73 16 2 C -0.08 -1.46 2.44 -10.79 -0.03 -1.49 16 3 C -0.15 -2.28 8.87 71.98 0.64 -1.64 16 4 C -0.01 -0.27 2.88 30.83 0.09 -0.18 16 5 H 0.10 2.08 8.14 -2.39 -0.02 2.06 16 6 C -0.13 -3.13 5.00 30.82 0.15 -2.98 16 7 C 0.09 2.59 2.86 45.64 0.13 2.72 16 8 H 0.04 1.23 7.86 -2.39 -0.02 1.21 16 9 N -0.66 -24.04 6.23 -487.83 -3.04 -27.08 16 10 C 0.12 5.27 5.33 86.31 0.46 5.73 16 11 C 0.03 1.31 1.57 -52.93 -0.08 1.22 16 12 C -0.50 -26.08 8.32 25.60 0.21 -25.87 16 13 H 0.05 2.84 7.82 -2.91 -0.02 2.82 16 14 C 0.03 1.41 5.39 84.65 0.46 1.86 16 15 N -0.91 -50.84 12.92 21.45 0.28 -50.56 16 16 Si 0.95 42.12 29.55 68.60 2.03 44.15 16 17 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 18 H -0.29 -12.72 7.11 99.48 0.71 -12.01 16 19 H -0.26 -11.31 7.11 99.48 0.71 -10.60 16 20 C -0.18 -7.54 9.96 30.62 0.30 -7.23 16 21 C -0.17 -7.98 9.42 30.62 0.29 -7.69 16 22 C -0.05 -1.29 6.93 72.72 0.50 -0.79 16 23 S -0.32 -8.48 21.81 -56.49 -1.23 -9.72 16 24 H 0.05 0.91 7.42 -2.39 -0.02 0.89 16 25 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 26 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 27 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 28 H 0.06 0.98 6.10 -2.38 -0.01 0.96 16 29 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 30 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 31 H 0.09 2.06 7.95 -2.39 -0.02 2.04 16 32 H 0.09 2.06 5.70 -2.39 -0.01 2.04 16 33 H 0.35 13.10 7.88 -89.70 -0.71 12.39 16 34 H 0.00 0.20 8.14 -2.39 -0.02 0.18 16 35 H 0.05 1.86 7.92 -2.39 -0.02 1.84 16 36 H 0.26 13.91 8.32 -92.71 -0.77 13.14 16 37 H 0.07 3.07 8.14 -2.39 -0.02 3.05 16 38 H 0.09 3.29 8.14 -2.39 -0.02 3.27 16 39 H 0.07 3.06 8.14 -2.38 -0.02 3.04 16 40 H 0.05 2.83 8.14 -2.39 -0.02 2.81 16 41 H 0.09 2.70 8.14 -2.39 -0.02 2.68 16 42 H 0.10 2.75 8.14 -2.38 -0.02 2.73 16 Total: -1.00 -55.55 342.65 2.08 -53.47 By element: Atomic # 1 Polarization: 27.54 SS G_CDS: 0.26 Total: 27.80 kcal Atomic # 6 Polarization: -41.85 SS G_CDS: 3.78 Total: -38.06 kcal Atomic # 7 Polarization: -74.88 SS G_CDS: -2.76 Total: -77.64 kcal Atomic # 14 Polarization: 42.12 SS G_CDS: 2.03 Total: 44.15 kcal Atomic # 16 Polarization: -8.48 SS G_CDS: -1.23 Total: -9.72 kcal Total: -55.55 2.08 -53.47 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309696942.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.946 kcal (2) G-P(sol) polarization free energy of solvation -55.547 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.080 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.467 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.521 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds