Wall clock time and date at job start Mon Mar 30 2020 00:57:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52999 * 109.46805 * 2 1 4 4 C 1.53002 * 109.46952 * 119.99627 * 2 1 3 5 5 H 1.08994 * 110.69966 * 56.69084 * 4 2 1 6 6 C 1.54263 * 110.78192 * 180.02562 * 4 2 1 7 7 C 1.52334 * 112.47541 * 142.87928 * 6 4 2 8 8 H 1.09001 * 108.86338 * 239.10909 * 7 6 4 9 9 N 1.46894 * 108.87208 * 120.74520 * 7 6 4 10 10 C 1.46904 * 111.00268 * 152.32917 * 9 7 6 11 11 C 1.52996 * 109.47253 * 184.19038 * 10 9 7 12 12 C 1.50708 * 115.54979 * 65.35282 * 11 10 9 13 13 H 1.08001 * 119.99850 * 265.74334 * 12 11 10 14 14 C 1.37870 * 120.00132 * 85.73973 * 12 11 10 15 15 N 1.31513 * 120.00284 * 184.46602 * 14 12 11 16 16 Si 1.86799 * 119.99921 * 4.46669 * 14 12 11 17 17 H 1.48499 * 109.47488 * 94.30680 * 16 14 12 18 18 H 1.48501 * 109.46868 * 214.30622 * 16 14 12 19 19 H 1.48502 * 109.47417 * 334.30232 * 16 14 12 20 20 C 1.52998 * 117.50115 * 279.68359 * 11 10 9 21 21 C 1.52997 * 117.50088 * 211.02074 * 11 10 9 22 22 C 1.53987 * 112.73893 * 359.86918 * 7 6 4 23 23 S 1.83954 * 102.57209 * 335.58840 * 22 7 6 24 24 H 1.09007 * 109.46788 * 180.02562 * 1 2 3 25 25 H 1.08995 * 109.47336 * 299.99771 * 1 2 3 26 26 H 1.08993 * 109.47132 * 60.00313 * 1 2 3 27 27 H 1.08993 * 109.46994 * 239.99819 * 2 1 3 28 28 H 1.09000 * 109.46939 * 180.02562 * 3 2 1 29 29 H 1.09004 * 109.47065 * 300.00240 * 3 2 1 30 30 H 1.09003 * 109.47123 * 59.99767 * 3 2 1 31 31 H 1.09007 * 108.86932 * 263.61983 * 6 4 2 32 32 H 1.09000 * 108.87128 * 22.12570 * 6 4 2 33 33 H 1.00898 * 111.00121 * 28.37214 * 9 7 6 34 34 H 1.08996 * 109.46842 * 304.19675 * 10 9 7 35 35 H 1.09005 * 109.46803 * 64.19295 * 10 9 7 36 36 H 0.96993 * 120.00344 * 180.02562 * 15 14 12 37 37 H 1.08996 * 117.50082 * 359.97438 * 20 11 10 38 38 H 1.08997 * 117.50081 * 145.02137 * 20 11 10 39 39 H 1.08999 * 117.50091 * 214.98092 * 21 11 10 40 40 H 1.09002 * 117.49513 * 359.97438 * 21 11 10 41 41 H 1.09003 * 110.85689 * 217.29139 * 22 7 6 42 42 H 1.08994 * 110.89169 * 93.90659 * 22 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 1 1.6405 -1.7340 1.2995 6 6 3.5822 -0.7383 1.2802 7 6 4.1384 -0.5702 2.6884 8 1 4.7719 0.3164 2.7137 9 7 4.9572 -1.7441 3.0191 10 6 6.0018 -1.4000 3.9930 11 6 6.8964 -2.6176 4.2330 12 6 7.7059 -3.0735 3.0463 13 1 7.3261 -3.8512 2.4002 14 6 8.9311 -2.4977 2.7854 15 7 9.5976 -2.8322 1.7021 16 14 9.6446 -1.2425 3.9706 17 1 10.5506 -1.9254 4.9288 18 1 10.4081 -0.2212 3.2095 19 1 8.5424 -0.5828 4.7158 20 6 6.3838 -3.6927 5.1934 21 6 7.5276 -2.7685 5.6185 22 6 3.0337 -0.4195 3.7506 23 16 1.6193 0.2274 2.7683 24 1 -0.3633 -1.0278 0.0005 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5137 -0.8900 27 1 1.8933 -0.5138 -0.8899 28 1 3.1300 1.4425 -0.0005 29 1 1.6765 1.9563 -0.8900 30 1 1.6765 1.9564 0.8900 31 1 3.9325 -1.6872 0.8739 32 1 3.9564 0.0719 0.6544 33 1 5.3581 -2.1512 2.1875 34 1 6.6032 -0.5778 3.6053 35 1 5.5378 -1.0992 4.9324 36 1 10.4598 -2.4274 1.5187 37 1 5.4093 -3.5323 5.6546 38 1 6.6323 -4.7296 4.9672 39 1 8.5281 -3.1978 5.6718 40 1 7.3057 -1.9999 6.3590 41 1 3.3293 0.2944 4.5194 42 1 2.7873 -1.3839 4.1947 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309696943.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:57:13 Heat of formation + Delta-G solvation = 12.785186 kcal Electronic energy + Delta-G solvation = -19086.726875 eV Core-core repulsion = 16386.018995 eV Total energy + Delta-G solvation = -2700.707880 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.151 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -38.20335 -37.02318 -35.38493 -32.13289 -31.25350 -28.34073 -27.26894 -26.14364 -25.21454 -23.38954 -21.59738 -20.48950 -19.84354 -18.93598 -16.43713 -16.39457 -15.70605 -15.15221 -14.89624 -14.77031 -14.27272 -13.98420 -13.45906 -13.32634 -12.90910 -12.72163 -12.40169 -12.20724 -12.06474 -11.90385 -11.55736 -11.47119 -11.26243 -11.13295 -10.95130 -10.88158 -10.70516 -10.46511 -10.40694 -10.07149 -9.72589 -9.44247 -9.04431 -8.64271 -8.44118 -7.81201 -7.55985 -6.15900 -4.18968 1.97695 2.40560 3.25382 3.35482 3.41165 4.38788 4.45072 4.52348 4.61296 4.89431 4.98439 5.05629 5.15988 5.18427 5.31180 5.36004 5.49207 5.56463 5.59754 5.70168 5.78694 5.80680 5.85149 5.93698 5.96193 6.05684 6.11146 6.13925 6.19330 6.23551 6.34541 6.40878 6.48276 6.53544 6.78948 7.08126 7.17833 7.66821 7.73848 8.04157 8.47690 8.88402 9.48542 10.95513 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.026415 B = 0.004810 C = 0.004484 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1059.759755 B = 5819.499175 C = 6243.616280 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.079 4.079 3 C -0.153 4.153 4 C -0.020 4.020 5 H 0.095 0.905 6 C -0.130 4.130 7 C 0.084 3.916 8 H 0.049 0.951 9 N -0.673 5.673 10 C 0.099 3.901 11 C 0.004 3.996 12 C -0.488 4.488 13 H 0.078 0.922 14 C 0.077 3.923 15 N -0.898 5.898 16 Si 0.878 3.122 17 H -0.280 1.280 18 H -0.296 1.296 19 H -0.256 1.256 20 C -0.169 4.169 21 C -0.204 4.204 22 C -0.051 4.051 23 S -0.305 6.305 24 H 0.055 0.945 25 H 0.060 0.940 26 H 0.055 0.945 27 H 0.080 0.920 28 H 0.059 0.941 29 H 0.051 0.949 30 H 0.071 0.929 31 H 0.084 0.916 32 H 0.080 0.920 33 H 0.357 0.643 34 H 0.026 0.974 35 H 0.045 0.955 36 H 0.264 0.736 37 H 0.073 0.927 38 H 0.082 0.918 39 H 0.084 0.916 40 H 0.069 0.931 41 H 0.093 0.907 42 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.552 6.695 -0.889 16.042 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.098 4.098 3 C -0.211 4.211 4 C -0.149 4.149 5 H 0.113 0.887 6 C -0.169 4.169 7 C -0.029 4.029 8 H 0.067 0.933 9 N -0.308 5.308 10 C -0.030 4.030 11 C 0.003 3.997 12 C -0.526 4.526 13 H 0.096 0.904 14 C -0.125 4.125 15 N -0.535 5.535 16 Si 0.706 3.294 17 H -0.206 1.206 18 H -0.223 1.223 19 H -0.180 1.180 20 C -0.206 4.206 21 C -0.242 4.242 22 C -0.200 4.200 23 S -0.079 6.079 24 H 0.074 0.926 25 H 0.079 0.921 26 H 0.074 0.926 27 H 0.099 0.901 28 H 0.078 0.922 29 H 0.070 0.930 30 H 0.090 0.910 31 H 0.103 0.897 32 H 0.099 0.901 33 H 0.179 0.821 34 H 0.044 0.956 35 H 0.064 0.936 36 H 0.074 0.926 37 H 0.091 0.909 38 H 0.100 0.900 39 H 0.102 0.898 40 H 0.088 0.912 41 H 0.112 0.888 42 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -15.710 7.277 -0.255 17.316 hybrid contribution 2.201 0.309 -0.077 2.224 sum -13.509 7.587 -0.333 15.497 Atomic orbital electron populations 1.21861 0.94730 1.01905 1.01996 1.20996 0.96082 0.96807 0.95924 1.22010 1.01445 0.95379 1.02252 1.23942 0.97191 1.00249 0.93536 0.88687 1.22379 0.93327 1.04166 0.97029 1.21933 0.95017 0.94224 0.91680 0.93261 1.60681 1.25516 1.26256 1.18319 1.21677 0.90689 0.96708 0.93970 1.19366 0.96979 0.93657 0.89711 1.20301 1.01835 1.21548 1.08897 0.90413 1.24993 0.96702 0.96027 0.94791 1.69903 1.14570 1.43692 1.25302 0.86866 0.79599 0.81620 0.81348 1.20619 1.22318 1.18030 1.22709 0.95901 0.96401 1.05604 1.22975 0.97737 1.03269 1.00224 1.24224 0.92825 1.03938 0.98999 1.87651 1.42628 1.62995 1.14606 0.92608 0.92091 0.92560 0.90128 0.92205 0.93008 0.90989 0.89733 0.90126 0.82092 0.95613 0.93637 0.92620 0.90899 0.89975 0.89790 0.91228 0.88849 0.88254 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.37 9.06 37.16 0.34 -1.03 16 2 C -0.08 -0.79 2.78 -90.62 -0.25 -1.04 16 3 C -0.15 -1.55 8.63 37.16 0.32 -1.23 16 4 C -0.02 -0.24 3.12 -26.07 -0.08 -0.32 16 5 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 6 C -0.13 -1.68 5.48 -26.41 -0.14 -1.83 16 7 C 0.08 1.24 2.97 -67.54 -0.20 1.04 16 8 H 0.05 0.78 7.67 -51.93 -0.40 0.38 16 9 N -0.67 -11.89 6.24 -106.54 -0.66 -12.55 16 10 C 0.10 1.96 5.00 -3.82 -0.02 1.94 16 11 C 0.00 0.09 0.99 -155.66 -0.15 -0.06 16 12 C -0.49 -12.91 8.76 -34.44 -0.30 -13.22 16 13 H 0.08 2.26 8.06 -52.49 -0.42 1.83 16 14 C 0.08 2.13 5.47 -17.82 -0.10 2.03 16 15 N -0.90 -26.42 13.96 55.43 0.77 -25.64 16 16 Si 0.88 21.20 24.91 -169.99 -4.23 16.97 16 17 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 18 H -0.30 -7.24 7.11 56.52 0.40 -6.84 16 19 H -0.26 -5.86 5.74 56.52 0.32 -5.54 16 20 C -0.17 -3.42 9.96 -26.69 -0.27 -3.69 16 21 C -0.20 -4.30 7.28 -26.69 -0.19 -4.49 16 22 C -0.05 -0.71 6.88 37.67 0.26 -0.45 16 23 S -0.31 -3.98 20.06 -107.50 -2.16 -6.13 16 24 H 0.05 0.49 8.14 -51.92 -0.42 0.07 16 25 H 0.06 0.63 7.32 -51.93 -0.38 0.25 16 26 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.08 0.76 8.14 -51.93 -0.42 0.33 16 28 H 0.06 0.63 6.12 -51.93 -0.32 0.31 16 29 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.07 0.80 6.77 -51.93 -0.35 0.45 16 31 H 0.08 1.13 7.22 -51.93 -0.37 0.76 16 32 H 0.08 1.00 5.70 -51.93 -0.30 0.70 16 33 H 0.36 6.84 7.12 -39.29 -0.28 6.57 16 34 H 0.03 0.55 6.96 -51.93 -0.36 0.19 16 35 H 0.05 0.84 7.99 -51.93 -0.42 0.43 16 36 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 37 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 38 H 0.08 1.70 8.14 -51.93 -0.42 1.27 16 39 H 0.08 1.86 7.05 -51.93 -0.37 1.49 16 40 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 41 H 0.09 1.24 8.14 -51.93 -0.42 0.82 16 42 H 0.10 1.44 8.05 -51.93 -0.42 1.02 16 LS Contribution 329.11 15.07 4.96 4.96 Total: -1.00 -27.46 329.11 -9.52 -36.98 By element: Atomic # 1 Polarization: 15.17 SS G_CDS: -7.40 Total: 7.78 kcal Atomic # 6 Polarization: -21.56 SS G_CDS: -0.80 Total: -22.35 kcal Atomic # 7 Polarization: -38.30 SS G_CDS: 0.11 Total: -38.19 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -4.23 Total: 16.97 kcal Atomic # 16 Polarization: -3.98 SS G_CDS: -2.16 Total: -6.13 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -27.46 -9.52 -36.98 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309696943.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.762 kcal (2) G-P(sol) polarization free energy of solvation -27.461 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.302 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.516 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.977 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.785 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds