Wall clock time and date at job start Mon Mar 30 2020 00:57:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52999 * 109.46805 * 2 1 4 4 C 1.53002 * 109.46952 * 119.99627 * 2 1 3 5 5 H 1.08994 * 110.69966 * 56.69084 * 4 2 1 6 6 C 1.54263 * 110.78192 * 180.02562 * 4 2 1 7 7 C 1.52334 * 112.47541 * 142.87928 * 6 4 2 8 8 H 1.09001 * 108.86338 * 239.10909 * 7 6 4 9 9 N 1.46894 * 108.87208 * 120.74520 * 7 6 4 10 10 C 1.46904 * 111.00268 * 152.32917 * 9 7 6 11 11 C 1.52996 * 109.47253 * 184.19038 * 10 9 7 12 12 C 1.50708 * 115.54979 * 65.35282 * 11 10 9 13 13 H 1.08001 * 119.99850 * 265.74334 * 12 11 10 14 14 C 1.37870 * 120.00132 * 85.73973 * 12 11 10 15 15 N 1.31513 * 120.00284 * 184.46602 * 14 12 11 16 16 Si 1.86799 * 119.99921 * 4.46669 * 14 12 11 17 17 H 1.48499 * 109.47488 * 94.30680 * 16 14 12 18 18 H 1.48501 * 109.46868 * 214.30622 * 16 14 12 19 19 H 1.48502 * 109.47417 * 334.30232 * 16 14 12 20 20 C 1.52998 * 117.50115 * 279.68359 * 11 10 9 21 21 C 1.52997 * 117.50088 * 211.02074 * 11 10 9 22 22 C 1.53987 * 112.73893 * 359.86918 * 7 6 4 23 23 S 1.83954 * 102.57209 * 335.58840 * 22 7 6 24 24 H 1.09007 * 109.46788 * 180.02562 * 1 2 3 25 25 H 1.08995 * 109.47336 * 299.99771 * 1 2 3 26 26 H 1.08993 * 109.47132 * 60.00313 * 1 2 3 27 27 H 1.08993 * 109.46994 * 239.99819 * 2 1 3 28 28 H 1.09000 * 109.46939 * 180.02562 * 3 2 1 29 29 H 1.09004 * 109.47065 * 300.00240 * 3 2 1 30 30 H 1.09003 * 109.47123 * 59.99767 * 3 2 1 31 31 H 1.09007 * 108.86932 * 263.61983 * 6 4 2 32 32 H 1.09000 * 108.87128 * 22.12570 * 6 4 2 33 33 H 1.00898 * 111.00121 * 28.37214 * 9 7 6 34 34 H 1.08996 * 109.46842 * 304.19675 * 10 9 7 35 35 H 1.09005 * 109.46803 * 64.19295 * 10 9 7 36 36 H 0.96993 * 120.00344 * 180.02562 * 15 14 12 37 37 H 1.08996 * 117.50082 * 359.97438 * 20 11 10 38 38 H 1.08997 * 117.50081 * 145.02137 * 20 11 10 39 39 H 1.08999 * 117.50091 * 214.98092 * 21 11 10 40 40 H 1.09002 * 117.49513 * 359.97438 * 21 11 10 41 41 H 1.09003 * 110.85689 * 217.29139 * 22 7 6 42 42 H 1.08994 * 110.89169 * 93.90659 * 22 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 1 1.6405 -1.7340 1.2995 6 6 3.5822 -0.7383 1.2802 7 6 4.1384 -0.5702 2.6884 8 1 4.7719 0.3164 2.7137 9 7 4.9572 -1.7441 3.0191 10 6 6.0018 -1.4000 3.9930 11 6 6.8964 -2.6176 4.2330 12 6 7.7059 -3.0735 3.0463 13 1 7.3261 -3.8512 2.4002 14 6 8.9311 -2.4977 2.7854 15 7 9.5976 -2.8322 1.7021 16 14 9.6446 -1.2425 3.9706 17 1 10.5506 -1.9254 4.9288 18 1 10.4081 -0.2212 3.2095 19 1 8.5424 -0.5828 4.7158 20 6 6.3838 -3.6927 5.1934 21 6 7.5276 -2.7685 5.6185 22 6 3.0337 -0.4195 3.7506 23 16 1.6193 0.2274 2.7683 24 1 -0.3633 -1.0278 0.0005 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5137 -0.8900 27 1 1.8933 -0.5138 -0.8899 28 1 3.1300 1.4425 -0.0005 29 1 1.6765 1.9563 -0.8900 30 1 1.6765 1.9564 0.8900 31 1 3.9325 -1.6872 0.8739 32 1 3.9564 0.0719 0.6544 33 1 5.3581 -2.1512 2.1875 34 1 6.6032 -0.5778 3.6053 35 1 5.5378 -1.0992 4.9324 36 1 10.4598 -2.4274 1.5187 37 1 5.4093 -3.5323 5.6546 38 1 6.6323 -4.7296 4.9672 39 1 8.5281 -3.1978 5.6718 40 1 7.3057 -1.9999 6.3590 41 1 3.3293 0.2944 4.5194 42 1 2.7873 -1.3839 4.1947 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309696943.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:57:12 Heat of formation + Delta-G solvation = -2.511340 kcal Electronic energy + Delta-G solvation = -19087.390182 eV Core-core repulsion = 16386.018995 eV Total energy + Delta-G solvation = -2701.371187 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.151 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.53646 -38.37001 -36.55060 -34.22840 -32.50433 -29.40639 -28.06003 -27.94602 -26.71711 -24.66174 -23.25155 -21.51967 -20.95848 -20.66554 -18.26027 -17.52799 -16.95321 -16.72781 -16.12528 -16.02467 -15.64849 -15.17290 -14.89208 -14.69695 -14.43059 -13.99879 -13.82992 -13.47284 -13.19084 -13.03984 -12.89299 -12.72465 -12.57204 -12.38269 -12.28953 -12.11975 -11.94626 -11.84398 -11.64009 -11.47245 -11.32758 -10.95835 -10.74286 -10.52009 -10.23647 -9.25482 -8.59391 -8.28881 -6.34655 0.95637 1.33555 1.36408 1.38217 1.50117 2.36901 3.03323 3.08994 3.48335 3.55467 3.69862 3.90246 4.07418 4.12394 4.16719 4.27298 4.32903 4.44447 4.45722 4.56175 4.67020 4.68294 4.74506 4.79681 4.84432 4.88591 4.90065 4.95721 5.02602 5.08232 5.11577 5.15348 5.22062 5.40327 5.43366 5.51665 5.53182 5.75141 6.22510 6.35908 6.50796 6.76185 7.35587 8.86057 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.026415 B = 0.004810 C = 0.004484 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1059.759755 B = 5819.499175 C = 6243.616280 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.077 4.077 3 C -0.151 4.151 4 C -0.014 4.014 5 H 0.095 0.905 6 C -0.128 4.128 7 C 0.085 3.915 8 H 0.042 0.958 9 N -0.673 5.673 10 C 0.108 3.892 11 C -0.020 4.020 12 C -0.479 4.479 13 H 0.036 0.964 14 C 0.024 3.976 15 N -0.947 5.947 16 Si 0.933 3.067 17 H -0.277 1.277 18 H -0.302 1.302 19 H -0.231 1.231 20 C -0.154 4.154 21 C -0.200 4.200 22 C -0.048 4.048 23 S -0.307 6.307 24 H 0.059 0.941 25 H 0.049 0.951 26 H 0.069 0.931 27 H 0.091 0.909 28 H 0.053 0.947 29 H 0.065 0.935 30 H 0.061 0.939 31 H 0.077 0.923 32 H 0.086 0.914 33 H 0.345 0.655 34 H 0.009 0.991 35 H 0.067 0.933 36 H 0.263 0.737 37 H 0.099 0.901 38 H 0.071 0.929 39 H 0.070 0.930 40 H 0.097 0.903 41 H 0.100 0.900 42 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.077 7.926 0.316 17.928 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.097 4.097 3 C -0.208 4.208 4 C -0.142 4.142 5 H 0.114 0.886 6 C -0.167 4.167 7 C -0.027 4.027 8 H 0.060 0.940 9 N -0.306 5.306 10 C -0.022 4.022 11 C -0.021 4.021 12 C -0.517 4.517 13 H 0.054 0.946 14 C -0.174 4.174 15 N -0.587 5.587 16 Si 0.759 3.241 17 H -0.203 1.203 18 H -0.229 1.229 19 H -0.154 1.154 20 C -0.191 4.191 21 C -0.237 4.237 22 C -0.197 4.197 23 S -0.081 6.081 24 H 0.078 0.922 25 H 0.068 0.932 26 H 0.088 0.912 27 H 0.109 0.891 28 H 0.072 0.928 29 H 0.084 0.916 30 H 0.080 0.920 31 H 0.096 0.904 32 H 0.104 0.896 33 H 0.165 0.835 34 H 0.027 0.973 35 H 0.085 0.915 36 H 0.072 0.928 37 H 0.117 0.883 38 H 0.090 0.910 39 H 0.088 0.912 40 H 0.116 0.884 41 H 0.119 0.881 42 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -17.271 8.511 0.975 19.278 hybrid contribution 2.607 -0.159 -0.519 2.662 sum -14.664 8.352 0.456 16.882 Atomic orbital electron populations 1.21827 0.93926 1.02243 1.02129 1.21034 0.96701 0.96629 0.95313 1.21978 1.01008 0.95421 1.02431 1.23986 0.96052 1.00402 0.93783 0.88625 1.22341 0.94356 1.04031 0.95974 1.22018 0.94860 0.92679 0.93117 0.93969 1.60717 1.24741 1.27538 1.17562 1.21528 0.90624 0.94731 0.95307 1.19330 0.98117 0.95798 0.88820 1.20424 1.01982 1.19787 1.09504 0.94599 1.25741 0.97252 0.98173 0.96191 1.70041 1.15236 1.45823 1.27573 0.85972 0.79404 0.79318 0.79450 1.20307 1.22919 1.15370 1.22715 0.96973 0.95374 1.04029 1.23022 0.97336 1.03922 0.99452 1.24132 0.92729 1.03979 0.98872 1.87701 1.42117 1.63130 1.15123 0.92194 0.93174 0.91181 0.89073 0.92817 0.91614 0.92018 0.90399 0.89550 0.83490 0.97252 0.91453 0.92759 0.88259 0.91000 0.91153 0.88438 0.88120 0.88736 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.36 9.06 71.98 0.65 -1.71 16 2 C -0.08 -1.40 2.78 -10.79 -0.03 -1.43 16 3 C -0.15 -2.78 8.63 71.98 0.62 -2.16 16 4 C -0.01 -0.30 3.12 31.02 0.10 -0.20 16 5 H 0.10 2.11 8.14 -2.39 -0.02 2.09 16 6 C -0.13 -3.19 5.48 30.80 0.17 -3.03 16 7 C 0.08 2.42 2.97 45.03 0.13 2.55 16 8 H 0.04 1.28 7.67 -2.39 -0.02 1.26 16 9 N -0.67 -23.15 6.24 -491.00 -3.06 -26.21 16 10 C 0.11 4.07 5.00 86.30 0.43 4.50 16 11 C -0.02 -0.85 0.99 -52.93 -0.05 -0.90 16 12 C -0.48 -25.79 8.76 25.60 0.22 -25.57 16 13 H 0.04 2.18 8.06 -2.91 -0.02 2.15 16 14 C 0.02 1.34 5.47 84.65 0.46 1.80 16 15 N -0.95 -57.48 13.96 21.44 0.30 -57.18 16 16 Si 0.93 43.42 24.91 68.60 1.71 45.13 16 17 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 18 H -0.30 -14.24 7.11 99.48 0.71 -13.53 16 19 H -0.23 -9.72 5.74 99.48 0.57 -9.15 16 20 C -0.15 -5.89 9.96 30.62 0.30 -5.59 16 21 C -0.20 -7.85 7.28 30.62 0.22 -7.63 16 22 C -0.05 -1.25 6.88 72.32 0.50 -0.75 16 23 S -0.31 -7.48 20.06 -56.49 -1.13 -8.62 16 24 H 0.06 0.93 8.14 -2.38 -0.02 0.91 16 25 H 0.05 0.94 7.32 -2.39 -0.02 0.92 16 26 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 27 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 28 H 0.05 1.05 6.12 -2.39 -0.01 1.03 16 29 H 0.06 1.02 8.14 -2.38 -0.02 1.00 16 30 H 0.06 1.27 6.77 -2.39 -0.02 1.26 16 31 H 0.08 2.06 7.22 -2.38 -0.02 2.05 16 32 H 0.09 2.06 5.70 -2.39 -0.01 2.04 16 33 H 0.35 13.35 7.12 -89.70 -0.64 12.71 16 34 H 0.01 0.38 6.96 -2.39 -0.02 0.37 16 35 H 0.07 2.27 7.99 -2.38 -0.02 2.25 16 36 H 0.26 15.16 8.31 -92.71 -0.77 14.39 16 37 H 0.10 3.30 8.14 -2.39 -0.02 3.28 16 38 H 0.07 2.89 8.14 -2.39 -0.02 2.87 16 39 H 0.07 2.97 7.05 -2.39 -0.02 2.95 16 40 H 0.10 3.32 8.14 -2.39 -0.02 3.30 16 41 H 0.10 2.44 8.14 -2.39 -0.02 2.42 16 42 H 0.09 2.55 8.05 -2.39 -0.02 2.53 16 Total: -1.00 -59.21 329.11 1.75 -57.46 By element: Atomic # 1 Polarization: 29.32 SS G_CDS: 0.21 Total: 29.53 kcal Atomic # 6 Polarization: -43.84 SS G_CDS: 3.73 Total: -40.11 kcal Atomic # 7 Polarization: -80.63 SS G_CDS: -2.77 Total: -83.39 kcal Atomic # 14 Polarization: 43.42 SS G_CDS: 1.71 Total: 45.13 kcal Atomic # 16 Polarization: -7.48 SS G_CDS: -1.13 Total: -8.62 kcal Total: -59.21 1.75 -57.46 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309696943.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.945 kcal (2) G-P(sol) polarization free energy of solvation -59.210 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.265 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.753 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.456 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.511 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds