Wall clock time and date at job start Mon Mar 30 2020 00:57:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52994 * 109.47101 * 2 1 4 4 C 1.53000 * 109.47058 * 120.00084 * 2 1 3 5 5 H 1.08999 * 110.75782 * 302.95592 * 4 2 1 6 6 C 1.55139 * 110.85595 * 179.23935 * 4 2 1 7 7 C 1.53853 * 106.89873 * 199.70162 * 6 4 2 8 8 H 1.09002 * 109.47029 * 287.42158 * 7 6 4 9 9 N 1.46902 * 109.61124 * 167.17167 * 7 6 4 10 10 C 1.46895 * 111.00250 * 154.04677 * 9 7 6 11 11 C 1.52998 * 109.47280 * 174.88191 * 10 9 7 12 12 C 1.50701 * 115.54713 * 296.15304 * 11 10 9 13 13 H 1.08001 * 119.99606 * 95.20774 * 12 11 10 14 14 C 1.37873 * 120.00008 * 275.20020 * 12 11 10 15 15 N 1.31512 * 120.00450 * 355.13489 * 14 12 11 16 16 Si 1.86804 * 119.99677 * 175.13746 * 14 12 11 17 17 H 1.48504 * 109.46878 * 179.97438 * 16 14 12 18 18 H 1.48499 * 109.46849 * 299.99725 * 16 14 12 19 19 H 1.48496 * 109.47325 * 60.00148 * 16 14 12 20 20 C 1.53002 * 117.49982 * 81.82552 * 11 10 9 21 21 C 1.52999 * 117.50105 * 150.48606 * 11 10 9 22 22 C 1.54277 * 108.92498 * 47.25608 * 7 6 4 23 23 S 1.83099 * 104.65021 * 332.04383 * 22 7 6 24 24 H 1.09003 * 109.47144 * 299.99961 * 1 2 3 25 25 H 1.08992 * 109.47194 * 60.00324 * 1 2 3 26 26 H 1.09007 * 109.46974 * 180.02562 * 1 2 3 27 27 H 1.08996 * 109.47364 * 239.99699 * 2 1 3 28 28 H 1.08997 * 109.47736 * 59.99863 * 3 2 1 29 29 H 1.09000 * 109.47110 * 180.02562 * 3 2 1 30 30 H 1.09006 * 109.47373 * 299.99941 * 3 2 1 31 31 H 1.09003 * 109.97586 * 80.34366 * 6 4 2 32 32 H 1.08998 * 109.97266 * 319.06078 * 6 4 2 33 33 H 1.00895 * 110.99866 * 30.09326 * 9 7 6 34 34 H 1.09001 * 109.47262 * 54.88066 * 10 9 7 35 35 H 1.09005 * 109.46995 * 294.88109 * 10 9 7 36 36 H 0.96993 * 120.00208 * 179.97438 * 15 14 12 37 37 H 1.09001 * 117.49827 * 215.00323 * 20 11 10 38 38 H 1.08998 * 117.49715 * 0.02562 * 20 11 10 39 39 H 1.09000 * 117.49806 * 359.97438 * 21 11 10 40 40 H 1.08994 * 117.50072 * 144.96826 * 21 11 10 41 41 H 1.08998 * 110.40294 * 90.84234 * 22 7 6 42 42 H 1.09004 * 110.40278 * 213.25388 * 22 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 1.6460 -0.2551 2.1523 6 6 3.5908 -0.7567 1.2721 7 6 3.9982 -1.8849 2.2357 8 1 3.8013 -1.5749 3.2620 9 7 5.4287 -2.1778 2.0751 10 6 5.9908 -2.7481 3.3067 11 6 7.4447 -3.1571 3.0621 12 6 7.6498 -4.2513 2.0463 13 1 7.8735 -4.0002 1.0199 14 6 7.5522 -5.5728 2.4272 15 7 7.3753 -5.8808 3.6934 16 14 7.6713 -6.9257 1.1447 17 1 7.5375 -8.2483 1.8065 18 1 6.5844 -6.7587 0.1467 19 1 8.9873 -6.8456 0.4614 20 6 8.5103 -2.0625 3.1464 21 6 8.4015 -3.1124 4.2551 22 6 3.1716 -3.1456 1.9079 23 16 1.6120 -2.5044 1.1945 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5137 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 1.8934 -0.5139 -0.8899 28 1 1.6767 1.9564 0.8899 29 1 3.1300 1.4424 -0.0005 30 1 1.6767 1.9563 -0.8900 31 1 3.9799 0.1968 1.6295 32 1 3.9733 -0.9643 0.2728 33 1 5.9373 -1.3532 1.7936 34 1 5.4113 -3.6237 3.5991 35 1 5.9517 -2.0041 4.1024 36 1 7.3062 -6.8104 3.9613 37 1 9.3599 -2.1338 2.4672 38 1 8.1757 -1.0511 3.3766 39 1 7.9953 -2.7910 5.2142 40 1 9.1791 -3.8745 4.3055 41 1 3.6959 -3.7652 1.1803 42 1 2.9688 -3.7137 2.8159 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309696944.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:57:15 Heat of formation + Delta-G solvation = 4.798115 kcal Electronic energy + Delta-G solvation = -18943.620657 eV Core-core repulsion = 16242.566432 eV Total energy + Delta-G solvation = -2701.054225 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.151 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -38.03009 -36.78563 -35.25873 -31.87183 -31.26632 -28.14488 -27.33840 -25.90429 -24.95838 -23.22337 -21.10474 -20.22431 -20.21500 -18.97236 -16.80373 -16.12116 -15.70139 -14.82288 -14.56340 -14.46564 -14.17106 -13.82399 -13.47465 -13.18457 -13.09997 -12.76195 -12.42060 -12.27280 -11.83383 -11.69321 -11.39392 -11.18502 -11.09659 -11.02439 -10.84714 -10.83790 -10.69240 -10.59622 -10.42189 -10.14288 -9.75987 -9.33196 -8.92180 -8.32858 -8.05090 -7.71593 -7.49126 -5.94039 -3.96672 1.98105 2.58213 3.37284 3.41622 3.45732 4.33141 4.49104 4.57442 4.78390 4.88159 5.01418 5.11450 5.20595 5.34074 5.35758 5.42316 5.46833 5.50543 5.52508 5.68390 5.73894 5.78211 5.87753 5.93845 6.08552 6.13314 6.14842 6.21725 6.28118 6.35277 6.46005 6.58097 6.73777 6.85852 7.14695 7.49429 7.52883 7.84809 7.97618 8.04028 8.55207 9.02253 9.66793 11.14996 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.022613 B = 0.004870 C = 0.004365 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1237.935423 B = 5748.040663 C = 6413.010217 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.076 4.076 3 C -0.145 4.145 4 C -0.030 4.030 5 H 0.092 0.908 6 C -0.126 4.126 7 C 0.083 3.917 8 H 0.045 0.955 9 N -0.657 5.657 10 C 0.107 3.893 11 C 0.049 3.951 12 C -0.469 4.469 13 H 0.058 0.942 14 C 0.068 3.932 15 N -0.887 5.887 16 Si 0.887 3.113 17 H -0.290 1.290 18 H -0.276 1.276 19 H -0.279 1.279 20 C -0.217 4.217 21 C -0.152 4.152 22 C -0.054 4.054 23 S -0.306 6.306 24 H 0.053 0.947 25 H 0.056 0.944 26 H 0.061 0.939 27 H 0.082 0.918 28 H 0.054 0.946 29 H 0.059 0.941 30 H 0.057 0.943 31 H 0.078 0.922 32 H 0.089 0.911 33 H 0.335 0.665 34 H 0.073 0.927 35 H -0.003 1.003 36 H 0.258 0.742 37 H 0.076 0.924 38 H 0.058 0.942 39 H 0.058 0.942 40 H 0.085 0.915 41 H 0.109 0.891 42 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.417 12.411 -3.903 16.666 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.096 4.096 3 C -0.204 4.204 4 C -0.159 4.159 5 H 0.110 0.890 6 C -0.165 4.165 7 C -0.029 4.029 8 H 0.063 0.937 9 N -0.288 5.288 10 C -0.022 4.022 11 C 0.048 3.952 12 C -0.507 4.507 13 H 0.076 0.924 14 C -0.134 4.134 15 N -0.524 5.524 16 Si 0.715 3.285 17 H -0.216 1.216 18 H -0.202 1.202 19 H -0.205 1.205 20 C -0.254 4.254 21 C -0.190 4.190 22 C -0.202 4.202 23 S -0.078 6.078 24 H 0.072 0.928 25 H 0.075 0.925 26 H 0.080 0.920 27 H 0.100 0.900 28 H 0.073 0.927 29 H 0.078 0.922 30 H 0.076 0.924 31 H 0.096 0.904 32 H 0.108 0.892 33 H 0.153 0.847 34 H 0.091 0.909 35 H 0.015 0.985 36 H 0.067 0.933 37 H 0.095 0.905 38 H 0.077 0.923 39 H 0.076 0.924 40 H 0.103 0.897 41 H 0.127 0.873 42 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -11.525 11.013 -4.418 16.541 hybrid contribution 1.118 0.433 0.545 1.317 sum -10.407 11.445 -3.873 15.947 Atomic orbital electron populations 1.21857 0.94810 1.02269 1.01570 1.21068 0.96084 0.95770 0.96700 1.21881 1.01453 0.95305 1.01797 1.23971 0.97536 0.93095 1.01311 0.88987 1.22797 0.93076 0.98696 1.01936 1.22235 0.91365 0.91904 0.97406 0.93697 1.60330 0.99238 1.33695 1.35550 1.21624 0.97435 0.96394 0.86725 1.18812 0.85785 0.93942 0.96611 1.20237 1.47492 0.88893 0.94068 0.92396 1.24923 0.95076 0.98422 0.94953 1.69999 1.49770 1.17872 1.14792 0.86744 0.78584 0.81165 0.81974 1.21565 1.20155 1.20488 1.22996 1.04617 0.93234 1.04567 1.22494 1.04860 0.99863 0.91807 1.24103 0.92289 1.00070 1.03788 1.87390 1.28456 1.06840 1.85159 0.92783 0.92537 0.92005 0.90012 0.92689 0.92189 0.92399 0.90366 0.89240 0.84719 0.90868 0.98514 0.93271 0.90542 0.92350 0.92364 0.89691 0.87284 0.89360 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.39 9.05 37.16 0.34 -1.05 16 2 C -0.08 -0.76 2.51 -90.62 -0.23 -0.99 16 3 C -0.15 -1.20 8.96 37.15 0.33 -0.86 16 4 C -0.03 -0.35 2.74 -25.60 -0.07 -0.42 16 5 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 6 C -0.13 -1.56 4.21 -25.16 -0.11 -1.66 16 7 C 0.08 1.27 2.90 -66.60 -0.19 1.08 16 8 H 0.05 0.70 7.85 -51.93 -0.41 0.29 16 9 N -0.66 -11.99 6.14 -105.55 -0.65 -12.64 16 10 C 0.11 2.27 5.29 -3.83 -0.02 2.25 16 11 C 0.05 1.17 1.63 -155.66 -0.25 0.92 16 12 C -0.47 -12.54 8.72 -34.44 -0.30 -12.84 16 13 H 0.06 1.58 7.82 -52.49 -0.41 1.17 16 14 C 0.07 1.85 5.43 -17.82 -0.10 1.76 16 15 N -0.89 -24.95 12.66 55.43 0.70 -24.25 16 16 Si 0.89 21.39 29.54 -169.99 -5.02 16.37 16 17 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 18 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 19 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 20 C -0.22 -4.61 9.96 -26.69 -0.27 -4.88 16 21 C -0.15 -3.55 9.16 -26.69 -0.24 -3.79 16 22 C -0.05 -0.89 6.82 37.83 0.26 -0.63 16 23 S -0.31 -4.46 21.74 -107.50 -2.34 -6.80 16 24 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 25 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 26 H 0.06 0.66 7.31 -51.93 -0.38 0.28 16 27 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 28 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 29 H 0.06 0.50 7.08 -51.93 -0.37 0.13 16 30 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 31 H 0.08 0.84 7.77 -51.93 -0.40 0.44 16 32 H 0.09 1.17 8.08 -51.93 -0.42 0.75 16 33 H 0.33 5.67 8.41 -39.29 -0.33 5.34 16 34 H 0.07 1.75 8.00 -51.93 -0.42 1.33 16 35 H 0.00 -0.06 8.10 -51.93 -0.42 -0.48 16 36 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 37 H 0.08 1.64 8.14 -51.93 -0.42 1.21 16 38 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 39 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 40 H 0.08 2.15 8.14 -51.93 -0.42 1.73 16 41 H 0.11 2.03 8.08 -51.93 -0.42 1.61 16 42 H 0.09 1.48 8.14 -51.93 -0.42 1.06 16 LS Contribution 345.16 15.07 5.20 5.20 Total: -1.00 -27.38 345.16 -10.71 -38.09 By element: Atomic # 1 Polarization: 12.91 SS G_CDS: -7.76 Total: 5.15 kcal Atomic # 6 Polarization: -20.27 SS G_CDS: -0.85 Total: -21.12 kcal Atomic # 7 Polarization: -36.94 SS G_CDS: 0.05 Total: -36.89 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Atomic # 16 Polarization: -4.46 SS G_CDS: -2.34 Total: -6.80 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -27.38 -10.71 -38.09 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309696944.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.889 kcal (2) G-P(sol) polarization free energy of solvation -27.376 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.513 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.715 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.091 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds