Wall clock time and date at job start Mon Mar 30 2020 00:57:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52994 * 109.47101 * 2 1 4 4 C 1.53000 * 109.47058 * 120.00084 * 2 1 3 5 5 H 1.08999 * 110.75782 * 302.95592 * 4 2 1 6 6 C 1.55139 * 110.85595 * 179.23935 * 4 2 1 7 7 C 1.53853 * 106.89873 * 199.70162 * 6 4 2 8 8 H 1.09002 * 109.47029 * 287.42158 * 7 6 4 9 9 N 1.46902 * 109.61124 * 167.17167 * 7 6 4 10 10 C 1.46895 * 111.00250 * 154.04677 * 9 7 6 11 11 C 1.52998 * 109.47280 * 174.88191 * 10 9 7 12 12 C 1.50701 * 115.54713 * 296.15304 * 11 10 9 13 13 H 1.08001 * 119.99606 * 95.20774 * 12 11 10 14 14 C 1.37873 * 120.00008 * 275.20020 * 12 11 10 15 15 N 1.31512 * 120.00450 * 355.13489 * 14 12 11 16 16 Si 1.86804 * 119.99677 * 175.13746 * 14 12 11 17 17 H 1.48504 * 109.46878 * 179.97438 * 16 14 12 18 18 H 1.48499 * 109.46849 * 299.99725 * 16 14 12 19 19 H 1.48496 * 109.47325 * 60.00148 * 16 14 12 20 20 C 1.53002 * 117.49982 * 81.82552 * 11 10 9 21 21 C 1.52999 * 117.50105 * 150.48606 * 11 10 9 22 22 C 1.54277 * 108.92498 * 47.25608 * 7 6 4 23 23 S 1.83099 * 104.65021 * 332.04383 * 22 7 6 24 24 H 1.09003 * 109.47144 * 299.99961 * 1 2 3 25 25 H 1.08992 * 109.47194 * 60.00324 * 1 2 3 26 26 H 1.09007 * 109.46974 * 180.02562 * 1 2 3 27 27 H 1.08996 * 109.47364 * 239.99699 * 2 1 3 28 28 H 1.08997 * 109.47736 * 59.99863 * 3 2 1 29 29 H 1.09000 * 109.47110 * 180.02562 * 3 2 1 30 30 H 1.09006 * 109.47373 * 299.99941 * 3 2 1 31 31 H 1.09003 * 109.97586 * 80.34366 * 6 4 2 32 32 H 1.08998 * 109.97266 * 319.06078 * 6 4 2 33 33 H 1.00895 * 110.99866 * 30.09326 * 9 7 6 34 34 H 1.09001 * 109.47262 * 54.88066 * 10 9 7 35 35 H 1.09005 * 109.46995 * 294.88109 * 10 9 7 36 36 H 0.96993 * 120.00208 * 179.97438 * 15 14 12 37 37 H 1.09001 * 117.49827 * 215.00323 * 20 11 10 38 38 H 1.08998 * 117.49715 * 0.02562 * 20 11 10 39 39 H 1.09000 * 117.49806 * 359.97438 * 21 11 10 40 40 H 1.08994 * 117.50072 * 144.96826 * 21 11 10 41 41 H 1.08998 * 110.40294 * 90.84234 * 22 7 6 42 42 H 1.09004 * 110.40278 * 213.25388 * 22 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 1.6460 -0.2551 2.1523 6 6 3.5908 -0.7567 1.2721 7 6 3.9982 -1.8849 2.2357 8 1 3.8013 -1.5749 3.2620 9 7 5.4287 -2.1778 2.0751 10 6 5.9908 -2.7481 3.3067 11 6 7.4447 -3.1571 3.0621 12 6 7.6498 -4.2513 2.0463 13 1 7.8735 -4.0002 1.0199 14 6 7.5522 -5.5728 2.4272 15 7 7.3753 -5.8808 3.6934 16 14 7.6713 -6.9257 1.1447 17 1 7.5375 -8.2483 1.8065 18 1 6.5844 -6.7587 0.1467 19 1 8.9873 -6.8456 0.4614 20 6 8.5103 -2.0625 3.1464 21 6 8.4015 -3.1124 4.2551 22 6 3.1716 -3.1456 1.9079 23 16 1.6120 -2.5044 1.1945 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5137 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 1.8934 -0.5139 -0.8899 28 1 1.6767 1.9564 0.8899 29 1 3.1300 1.4424 -0.0005 30 1 1.6767 1.9563 -0.8900 31 1 3.9799 0.1968 1.6295 32 1 3.9733 -0.9643 0.2728 33 1 5.9373 -1.3532 1.7936 34 1 5.4113 -3.6237 3.5991 35 1 5.9517 -2.0041 4.1024 36 1 7.3062 -6.8104 3.9613 37 1 9.3599 -2.1338 2.4672 38 1 8.1757 -1.0511 3.3766 39 1 7.9953 -2.7910 5.2142 40 1 9.1791 -3.8745 4.3055 41 1 3.6959 -3.7652 1.1803 42 1 2.9688 -3.7137 2.8159 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309696944.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:57:14 Heat of formation + Delta-G solvation = -9.045295 kcal Electronic energy + Delta-G solvation = -18944.220952 eV Core-core repulsion = 16242.566432 eV Total energy + Delta-G solvation = -2701.654521 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.151 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.36013 -38.19088 -36.48569 -33.91543 -32.58724 -29.31010 -28.00696 -27.75924 -26.58410 -24.45723 -22.87041 -21.51892 -21.08559 -20.80551 -18.15523 -17.69688 -17.06461 -16.54574 -16.08337 -15.62145 -15.53338 -14.91344 -14.79190 -14.73939 -14.23444 -14.04382 -13.77346 -13.25319 -13.22456 -13.00745 -12.79896 -12.77746 -12.51120 -12.38398 -12.29096 -12.11194 -12.03140 -11.97201 -11.64291 -11.60227 -11.20461 -10.89469 -10.77170 -10.31871 -9.89894 -9.17500 -8.68773 -8.02989 -6.09326 0.85219 1.42017 1.42408 1.44396 1.50296 2.47304 3.12724 3.27285 3.58529 3.62166 3.71130 3.92217 4.00927 4.14181 4.14869 4.36991 4.41246 4.45772 4.53107 4.59848 4.70067 4.75669 4.76470 4.78293 4.85220 4.96967 4.97466 5.01863 5.03505 5.08206 5.15751 5.25809 5.32082 5.43672 5.47695 5.69253 5.72090 5.87933 6.27670 6.49411 6.70167 6.94074 7.56028 9.04996 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.022613 B = 0.004870 C = 0.004365 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1237.935423 B = 5748.040663 C = 6413.010217 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.074 4.074 3 C -0.141 4.141 4 C -0.016 4.016 5 H 0.105 0.895 6 C -0.116 4.116 7 C 0.086 3.914 8 H 0.049 0.951 9 N -0.667 5.667 10 C 0.124 3.876 11 C 0.023 3.977 12 C -0.476 4.476 13 H 0.047 0.953 14 C 0.024 3.976 15 N -0.912 5.912 16 Si 0.939 3.061 17 H -0.289 1.289 18 H -0.278 1.278 19 H -0.274 1.274 20 C -0.186 4.186 21 C -0.162 4.162 22 C -0.055 4.055 23 S -0.325 6.325 24 H 0.061 0.939 25 H 0.070 0.930 26 H 0.043 0.957 27 H 0.071 0.929 28 H 0.063 0.937 29 H 0.061 0.939 30 H 0.068 0.932 31 H 0.106 0.894 32 H 0.083 0.917 33 H 0.346 0.654 34 H 0.038 0.962 35 H 0.012 0.988 36 H 0.255 0.745 37 H 0.074 0.926 38 H 0.091 0.909 39 H 0.069 0.931 40 H 0.056 0.944 41 H 0.079 0.921 42 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.986 14.973 -4.581 19.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.094 4.094 3 C -0.200 4.200 4 C -0.145 4.145 5 H 0.123 0.877 6 C -0.155 4.155 7 C -0.025 4.025 8 H 0.067 0.933 9 N -0.299 5.299 10 C -0.005 4.005 11 C 0.022 3.978 12 C -0.515 4.515 13 H 0.065 0.935 14 C -0.175 4.175 15 N -0.551 5.551 16 Si 0.766 3.234 17 H -0.215 1.215 18 H -0.203 1.203 19 H -0.199 1.199 20 C -0.223 4.223 21 C -0.201 4.201 22 C -0.204 4.204 23 S -0.098 6.098 24 H 0.080 0.920 25 H 0.089 0.911 26 H 0.062 0.938 27 H 0.089 0.911 28 H 0.082 0.918 29 H 0.080 0.920 30 H 0.087 0.913 31 H 0.124 0.876 32 H 0.102 0.898 33 H 0.165 0.835 34 H 0.056 0.944 35 H 0.030 0.970 36 H 0.064 0.936 37 H 0.092 0.908 38 H 0.110 0.890 39 H 0.088 0.912 40 H 0.075 0.925 41 H 0.098 0.902 42 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -12.089 13.588 -5.112 18.892 hybrid contribution 1.272 -0.327 0.728 1.501 sum -10.817 13.261 -4.383 17.666 Atomic orbital electron populations 1.21842 0.94346 1.01405 1.02720 1.21067 0.96443 0.96701 0.95146 1.21857 1.01558 0.93737 1.02861 1.24132 0.96984 0.90451 1.02935 0.87726 1.22720 0.93483 0.98486 1.00763 1.22274 0.89385 0.92326 0.98561 0.93297 1.60150 1.00830 1.34600 1.34275 1.21238 0.95350 0.95623 0.88340 1.18928 0.87658 0.94863 0.96348 1.20488 1.46652 0.90055 0.94257 0.93463 1.25515 0.95314 1.00313 0.96352 1.70098 1.51119 1.17857 1.16068 0.85923 0.78505 0.78999 0.79993 1.21501 1.20327 1.19896 1.22978 1.02985 0.93950 1.02409 1.22389 1.04359 1.00522 0.92783 1.23939 0.93543 1.00496 1.02405 1.87473 1.27212 1.10162 1.84909 0.91953 0.91129 0.93822 0.91072 0.91752 0.91988 0.91291 0.87618 0.89811 0.83486 0.94380 0.96955 0.93629 0.90787 0.89020 0.91232 0.92524 0.90218 0.90717 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.39 9.05 71.98 0.65 -1.74 16 2 C -0.07 -1.27 2.51 -10.80 -0.03 -1.30 16 3 C -0.14 -1.80 8.96 71.98 0.65 -1.16 16 4 C -0.02 -0.34 2.74 31.33 0.09 -0.26 16 5 H 0.10 2.00 8.14 -2.39 -0.02 1.99 16 6 C -0.12 -2.56 4.21 31.62 0.13 -2.43 16 7 C 0.09 2.55 2.90 45.64 0.13 2.68 16 8 H 0.05 1.44 7.85 -2.39 -0.02 1.42 16 9 N -0.67 -23.68 6.14 -487.85 -3.00 -26.68 16 10 C 0.12 5.22 5.29 86.30 0.46 5.67 16 11 C 0.02 1.07 1.63 -52.93 -0.09 0.99 16 12 C -0.48 -25.71 8.72 25.60 0.22 -25.49 16 13 H 0.05 2.59 7.82 -2.91 -0.02 2.57 16 14 C 0.02 1.32 5.43 84.65 0.46 1.78 16 15 N -0.91 -52.53 12.66 21.45 0.27 -52.26 16 16 Si 0.94 44.63 29.54 68.60 2.03 46.65 16 17 H -0.29 -13.62 7.11 99.48 0.71 -12.92 16 18 H -0.28 -13.16 7.11 99.48 0.71 -12.45 16 19 H -0.27 -12.66 7.11 99.48 0.71 -11.95 16 20 C -0.19 -7.54 9.96 30.62 0.30 -7.24 16 21 C -0.16 -7.52 9.16 30.62 0.28 -7.24 16 22 C -0.05 -1.84 6.82 72.42 0.49 -1.35 16 23 S -0.32 -9.36 21.74 -56.49 -1.23 -10.59 16 24 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 25 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 26 H 0.04 0.87 7.31 -2.38 -0.02 0.86 16 27 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 28 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 29 H 0.06 0.78 7.08 -2.39 -0.02 0.77 16 30 H 0.07 0.76 8.14 -2.38 -0.02 0.74 16 31 H 0.11 1.83 7.77 -2.39 -0.02 1.81 16 32 H 0.08 2.00 8.08 -2.39 -0.02 1.98 16 33 H 0.35 10.91 8.41 -89.70 -0.75 10.16 16 34 H 0.04 1.86 8.00 -2.39 -0.02 1.84 16 35 H 0.01 0.48 8.10 -2.38 -0.02 0.46 16 36 H 0.25 14.26 8.31 -92.71 -0.77 13.49 16 37 H 0.07 3.03 8.14 -2.39 -0.02 3.01 16 38 H 0.09 3.12 8.14 -2.39 -0.02 3.10 16 39 H 0.07 3.01 8.14 -2.39 -0.02 2.99 16 40 H 0.06 2.91 8.14 -2.39 -0.02 2.89 16 41 H 0.08 3.12 8.08 -2.39 -0.02 3.10 16 42 H 0.07 2.64 8.14 -2.39 -0.02 2.62 16 Total: -1.00 -59.58 345.16 2.04 -57.54 By element: Atomic # 1 Polarization: 22.19 SS G_CDS: 0.21 Total: 22.40 kcal Atomic # 6 Polarization: -40.82 SS G_CDS: 3.75 Total: -37.07 kcal Atomic # 7 Polarization: -76.21 SS G_CDS: -2.73 Total: -78.94 kcal Atomic # 14 Polarization: 44.63 SS G_CDS: 2.03 Total: 46.65 kcal Atomic # 16 Polarization: -9.36 SS G_CDS: -1.23 Total: -10.59 kcal Total: -59.58 2.04 -57.54 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309696944.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.494 kcal (2) G-P(sol) polarization free energy of solvation -59.576 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.082 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.539 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.045 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds