Wall clock time and date at job start Mon Mar 30 2020 01:24:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86797 * 120.00117 * 2 1 4 4 H 1.48496 * 109.47109 * 239.99819 * 3 2 1 5 5 H 1.48499 * 109.46868 * 0.02562 * 3 2 1 6 6 H 1.48509 * 109.46864 * 119.99827 * 3 2 1 7 7 C 1.37881 * 120.00009 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00051 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99779 * 359.97438 * 7 2 1 10 10 C 1.53006 * 109.46723 * 179.97438 * 9 7 2 11 11 C 1.50704 * 109.46567 * 180.02562 * 10 9 7 12 12 O 1.21276 * 120.00499 * 0.02562 * 11 10 9 13 13 N 1.34783 * 119.99567 * 180.02562 * 11 10 9 14 14 C 1.46497 * 119.99638 * 179.97438 * 13 11 10 15 15 C 1.53001 * 109.46900 * 180.02562 * 14 13 11 16 16 H 1.08999 * 109.47164 * 60.00014 * 15 14 13 17 17 O 1.42903 * 109.47171 * 299.99748 * 15 14 13 18 18 C 1.53003 * 109.47376 * 180.02562 * 15 14 13 19 19 C 1.53002 * 109.46706 * 299.99815 * 18 15 14 20 20 C 1.53000 * 109.47108 * 179.97438 * 19 18 15 21 21 C 1.53001 * 109.46896 * 60.00233 * 20 19 18 22 22 C 1.53002 * 109.47052 * 299.99802 * 21 20 19 23 23 C 1.53000 * 109.47108 * 60.00328 * 22 21 20 24 24 H 0.97002 * 120.00232 * 359.97438 * 1 2 3 25 25 H 1.08998 * 109.46804 * 60.00738 * 9 7 2 26 26 H 1.08997 * 109.47541 * 300.00361 * 9 7 2 27 27 H 1.08998 * 109.46867 * 60.00790 * 10 9 7 28 28 H 1.09001 * 109.47176 * 300.00013 * 10 9 7 29 29 H 0.96996 * 120.00052 * 0.02562 * 13 11 10 30 30 H 1.08999 * 109.47200 * 60.00094 * 14 13 11 31 31 H 1.08997 * 109.47487 * 300.00148 * 14 13 11 32 32 H 0.96700 * 114.00311 * 300.00378 * 17 15 14 33 33 H 1.08999 * 109.47269 * 59.99703 * 18 15 14 34 34 H 1.08999 * 109.47165 * 299.99952 * 19 18 15 35 35 H 1.08997 * 109.47213 * 60.00032 * 19 18 15 36 36 H 1.08999 * 109.47347 * 300.00182 * 20 19 18 37 37 H 1.08997 * 109.47345 * 180.02562 * 20 19 18 38 38 H 1.08999 * 109.46999 * 180.02562 * 21 20 19 39 39 H 1.08999 * 109.47164 * 59.99837 * 21 20 19 40 40 H 1.08998 * 109.47688 * 300.00029 * 22 21 20 41 41 H 1.08997 * 109.47213 * 179.97438 * 22 21 20 42 42 H 1.09001 * 109.47109 * 180.02562 * 23 22 21 43 43 H 1.08999 * 109.47347 * 59.99818 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6963 -1.2124 5 1 1.2841 2.7464 0.0006 6 1 3.1029 1.6963 1.2126 7 6 2.0045 -1.1941 0.0005 8 1 3.0844 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0017 10 6 2.2453 -3.6621 0.0015 11 6 1.4917 -4.9672 0.0020 12 8 0.2789 -4.9672 0.0020 13 7 2.1656 -6.1344 0.0024 14 6 1.4330 -7.4031 0.0035 15 6 2.4273 -8.5660 0.0044 16 1 3.0540 -8.5076 0.8943 17 8 3.2488 -8.4914 -1.1625 18 6 1.6623 -9.8911 0.0049 19 6 0.7824 -9.9714 1.2540 20 6 0.0169 -11.2962 1.2542 21 6 1.0107 -12.4594 1.2549 22 6 1.8907 -12.3791 0.0058 23 6 2.6562 -11.0544 0.0055 24 1 -0.4850 0.8400 0.0004 25 1 0.6241 -2.5575 -0.8881 26 1 0.6246 -2.5563 0.8919 27 1 2.8725 -3.6040 0.8910 28 1 2.8712 -3.6047 -0.8890 29 1 3.1355 -6.1344 0.0027 30 1 0.8060 -7.4614 -0.8862 31 1 0.8067 -7.4603 0.8937 32 1 2.7566 -8.5373 -1.9937 33 1 1.0359 -9.9493 -0.8852 34 1 1.4088 -9.9132 2.1441 35 1 0.0741 -9.1430 1.2533 36 1 -0.6096 -11.3540 0.3641 37 1 -0.6103 -11.3532 2.1438 38 1 0.4654 -13.4032 1.2546 39 1 1.6372 -12.4016 2.1450 40 1 1.2643 -12.4369 -0.8844 41 1 2.5990 -13.2075 0.0064 42 1 3.2827 -10.9969 -0.8846 43 1 3.2826 -10.9965 0.8956 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330907594.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:24:27 Heat of formation + Delta-G solvation = -135.023496 kcal Electronic energy + Delta-G solvation = -20546.277641 eV Core-core repulsion = 17396.407425 eV Total energy + Delta-G solvation = -3149.870216 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.89024 -38.80060 -36.86934 -34.04330 -33.40931 -31.99358 -31.03397 -30.90461 -27.98640 -25.54158 -23.71739 -22.74633 -21.47256 -21.32205 -20.16136 -19.51281 -17.12051 -16.80361 -16.10921 -15.79975 -15.33529 -15.19706 -14.75551 -14.45259 -14.35657 -14.20817 -13.97638 -13.35924 -13.00432 -12.75256 -12.59038 -12.40215 -12.12884 -11.79254 -11.72510 -11.43731 -11.18173 -11.13308 -10.94519 -10.88819 -10.73856 -10.60241 -10.29245 -9.98387 -9.92023 -9.63617 -9.15316 -8.97341 -8.73741 -8.29448 -5.93775 -3.98094 3.29641 3.36203 3.40337 3.42019 3.50818 4.11775 4.27295 4.41398 4.47825 4.50173 4.66347 4.82402 4.98552 5.01508 5.08876 5.21024 5.21221 5.25208 5.36310 5.40949 5.51634 5.57136 5.67037 5.75601 5.82710 5.83784 5.86617 5.91377 5.97946 6.05483 6.16197 6.27373 6.29398 6.75263 6.93621 7.37782 7.76703 7.89311 7.95175 8.09903 8.41596 8.82634 9.10534 9.65197 11.17202 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.049568 B = 0.002807 C = 0.002707 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 564.748249 B = 9971.525777 C =10341.216243 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.057 3.943 3 Si 0.894 3.106 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.527 4.527 8 H 0.055 0.945 9 C 0.037 3.963 10 C -0.130 4.130 11 C 0.508 3.492 12 O -0.538 6.538 13 N -0.739 5.739 14 C 0.086 3.914 15 C 0.101 3.899 16 H 0.103 0.897 17 O -0.557 6.557 18 C -0.114 4.114 19 C -0.120 4.120 20 C -0.119 4.119 21 C -0.121 4.121 22 C -0.120 4.120 23 C -0.108 4.108 24 H 0.261 0.739 25 H 0.023 0.977 26 H 0.023 0.977 27 H 0.079 0.921 28 H 0.079 0.921 29 H 0.401 0.599 30 H 0.064 0.936 31 H 0.074 0.926 32 H 0.376 0.624 33 H 0.075 0.925 34 H 0.065 0.935 35 H 0.070 0.930 36 H 0.061 0.939 37 H 0.062 0.938 38 H 0.059 0.941 39 H 0.061 0.939 40 H 0.060 0.940 41 H 0.060 0.940 42 H 0.069 0.931 43 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.199 -25.918 0.634 26.442 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.144 4.144 3 Si 0.721 3.279 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.566 4.566 8 H 0.074 0.926 9 C 0.000 4.000 10 C -0.170 4.170 11 C 0.297 3.703 12 O -0.414 6.414 13 N -0.394 5.394 14 C -0.039 4.039 15 C 0.041 3.959 16 H 0.121 0.879 17 O -0.362 6.362 18 C -0.133 4.133 19 C -0.157 4.157 20 C -0.156 4.156 21 C -0.158 4.158 22 C -0.158 4.158 23 C -0.146 4.146 24 H 0.071 0.929 25 H 0.041 0.959 26 H 0.041 0.959 27 H 0.097 0.903 28 H 0.098 0.902 29 H 0.235 0.765 30 H 0.082 0.918 31 H 0.092 0.908 32 H 0.223 0.777 33 H 0.093 0.907 34 H 0.084 0.916 35 H 0.089 0.911 36 H 0.080 0.920 37 H 0.081 0.919 38 H 0.077 0.923 39 H 0.080 0.920 40 H 0.079 0.921 41 H 0.079 0.921 42 H 0.087 0.913 43 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 4.607 -25.741 1.081 26.172 hybrid contribution 0.377 0.829 -0.360 0.979 sum 4.984 -24.912 0.721 25.416 Atomic orbital electron populations 1.69988 1.06062 1.26671 1.50199 1.25030 0.94833 0.99226 0.95331 0.86645 0.79532 0.83151 0.78548 1.20244 1.21302 1.20254 1.21200 0.92911 0.91048 1.51395 0.92646 1.18891 0.93177 0.89390 0.98561 1.21858 1.00688 0.91939 1.02489 1.21581 0.88620 0.85724 0.74386 1.90660 1.14529 1.87715 1.48469 1.46103 1.10301 1.05153 1.77819 1.22019 0.95061 0.83986 1.02809 1.22226 0.92007 0.92205 0.89439 0.87879 1.86573 1.37290 1.96371 1.15958 1.21806 0.97175 0.94773 0.99554 1.21649 0.98697 0.97960 0.97435 1.21518 0.97725 0.94417 1.01986 1.21555 0.97814 0.98177 0.98286 1.21543 0.98620 0.97411 0.98178 1.21484 0.97291 0.93298 1.02518 0.92912 0.95875 0.95868 0.90289 0.90244 0.76493 0.91780 0.90797 0.77656 0.90671 0.91645 0.91126 0.91975 0.91909 0.92256 0.92044 0.92105 0.92122 0.91279 0.91991 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.78 13.29 55.43 0.74 -27.04 16 2 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 3 Si 0.89 21.91 29.54 -169.99 -5.02 16.89 16 4 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 5 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 6 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 7 C -0.53 -15.19 9.11 -34.44 -0.31 -15.51 16 8 H 0.06 1.50 7.74 -52.49 -0.41 1.10 16 9 C 0.04 1.02 4.26 -27.88 -0.12 0.91 16 10 C -0.13 -2.70 5.64 -27.88 -0.16 -2.86 16 11 C 0.51 10.01 7.83 -10.98 -0.09 9.92 16 12 O -0.54 -12.91 15.98 5.56 0.09 -12.82 16 13 N -0.74 -10.61 5.45 -60.30 -0.33 -10.94 16 14 C 0.09 1.03 4.99 -4.04 -0.02 1.01 16 15 C 0.10 0.89 2.64 -26.73 -0.07 0.82 16 16 H 0.10 0.93 8.14 -51.93 -0.42 0.50 16 17 O -0.56 -5.11 12.41 -35.23 -0.44 -5.54 16 18 C -0.11 -0.85 1.96 -90.62 -0.18 -1.03 16 19 C -0.12 -0.93 4.85 -26.73 -0.13 -1.06 16 20 C -0.12 -0.84 5.92 -26.73 -0.16 -1.00 16 21 C -0.12 -0.78 5.92 -26.73 -0.16 -0.94 16 22 C -0.12 -0.78 5.92 -26.73 -0.16 -0.93 16 23 C -0.11 -0.77 5.06 -26.73 -0.14 -0.90 16 24 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 25 H 0.02 0.69 8.10 -51.93 -0.42 0.27 16 26 H 0.02 0.69 8.10 -51.93 -0.42 0.27 16 27 H 0.08 1.50 8.14 -51.93 -0.42 1.08 16 28 H 0.08 1.52 8.14 -51.93 -0.42 1.10 16 29 H 0.40 4.89 8.35 -40.82 -0.34 4.55 16 30 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.07 0.94 6.43 -51.93 -0.33 0.61 16 32 H 0.38 2.54 9.05 45.56 0.41 2.95 16 33 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.07 0.61 6.43 -51.93 -0.33 0.28 16 36 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 37 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 38 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 39 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 40 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 41 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 42 H 0.07 0.51 7.68 -51.93 -0.40 0.12 16 43 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 LS Contribution 343.57 15.07 5.18 5.18 Total: -1.00 -34.24 343.57 -8.44 -42.67 By element: Atomic # 1 Polarization: 8.47 SS G_CDS: -6.87 Total: 1.60 kcal Atomic # 6 Polarization: -8.21 SS G_CDS: -1.78 Total: -9.99 kcal Atomic # 7 Polarization: -38.39 SS G_CDS: 0.41 Total: -37.98 kcal Atomic # 8 Polarization: -18.02 SS G_CDS: -0.35 Total: -18.36 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -34.24 -8.44 -42.67 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330907594.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.349 kcal (2) G-P(sol) polarization free energy of solvation -34.236 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.585 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.438 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.675 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.023 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds