Wall clock time and date at job start Mon Mar 30 2020 01:24:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86797 * 120.00117 * 2 1 4 4 H 1.48496 * 109.47109 * 239.99819 * 3 2 1 5 5 H 1.48499 * 109.46868 * 0.02562 * 3 2 1 6 6 H 1.48509 * 109.46864 * 119.99827 * 3 2 1 7 7 C 1.37881 * 120.00009 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00051 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99779 * 359.97438 * 7 2 1 10 10 C 1.53006 * 109.46723 * 179.97438 * 9 7 2 11 11 C 1.50704 * 109.46567 * 180.02562 * 10 9 7 12 12 O 1.21276 * 120.00499 * 0.02562 * 11 10 9 13 13 N 1.34783 * 119.99567 * 180.02562 * 11 10 9 14 14 C 1.46497 * 119.99638 * 179.97438 * 13 11 10 15 15 C 1.53001 * 109.46900 * 180.02562 * 14 13 11 16 16 H 1.08999 * 109.47164 * 60.00014 * 15 14 13 17 17 O 1.42903 * 109.47171 * 299.99748 * 15 14 13 18 18 C 1.53003 * 109.47376 * 180.02562 * 15 14 13 19 19 C 1.53002 * 109.46706 * 299.99815 * 18 15 14 20 20 C 1.53000 * 109.47108 * 179.97438 * 19 18 15 21 21 C 1.53001 * 109.46896 * 60.00233 * 20 19 18 22 22 C 1.53002 * 109.47052 * 299.99802 * 21 20 19 23 23 C 1.53000 * 109.47108 * 60.00328 * 22 21 20 24 24 H 0.97002 * 120.00232 * 359.97438 * 1 2 3 25 25 H 1.08998 * 109.46804 * 60.00738 * 9 7 2 26 26 H 1.08997 * 109.47541 * 300.00361 * 9 7 2 27 27 H 1.08998 * 109.46867 * 60.00790 * 10 9 7 28 28 H 1.09001 * 109.47176 * 300.00013 * 10 9 7 29 29 H 0.96996 * 120.00052 * 0.02562 * 13 11 10 30 30 H 1.08999 * 109.47200 * 60.00094 * 14 13 11 31 31 H 1.08997 * 109.47487 * 300.00148 * 14 13 11 32 32 H 0.96700 * 114.00311 * 300.00378 * 17 15 14 33 33 H 1.08999 * 109.47269 * 59.99703 * 18 15 14 34 34 H 1.08999 * 109.47165 * 299.99952 * 19 18 15 35 35 H 1.08997 * 109.47213 * 60.00032 * 19 18 15 36 36 H 1.08999 * 109.47347 * 300.00182 * 20 19 18 37 37 H 1.08997 * 109.47345 * 180.02562 * 20 19 18 38 38 H 1.08999 * 109.46999 * 180.02562 * 21 20 19 39 39 H 1.08999 * 109.47164 * 59.99837 * 21 20 19 40 40 H 1.08998 * 109.47688 * 300.00029 * 22 21 20 41 41 H 1.08997 * 109.47213 * 179.97438 * 22 21 20 42 42 H 1.09001 * 109.47109 * 180.02562 * 23 22 21 43 43 H 1.08999 * 109.47347 * 59.99818 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6963 -1.2124 5 1 1.2841 2.7464 0.0006 6 1 3.1029 1.6963 1.2126 7 6 2.0045 -1.1941 0.0005 8 1 3.0844 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0017 10 6 2.2453 -3.6621 0.0015 11 6 1.4917 -4.9672 0.0020 12 8 0.2789 -4.9672 0.0020 13 7 2.1656 -6.1344 0.0024 14 6 1.4330 -7.4031 0.0035 15 6 2.4273 -8.5660 0.0044 16 1 3.0540 -8.5076 0.8943 17 8 3.2488 -8.4914 -1.1625 18 6 1.6623 -9.8911 0.0049 19 6 0.7824 -9.9714 1.2540 20 6 0.0169 -11.2962 1.2542 21 6 1.0107 -12.4594 1.2549 22 6 1.8907 -12.3791 0.0058 23 6 2.6562 -11.0544 0.0055 24 1 -0.4850 0.8400 0.0004 25 1 0.6241 -2.5575 -0.8881 26 1 0.6246 -2.5563 0.8919 27 1 2.8725 -3.6040 0.8910 28 1 2.8712 -3.6047 -0.8890 29 1 3.1355 -6.1344 0.0027 30 1 0.8060 -7.4614 -0.8862 31 1 0.8067 -7.4603 0.8937 32 1 2.7566 -8.5373 -1.9937 33 1 1.0359 -9.9493 -0.8852 34 1 1.4088 -9.9132 2.1441 35 1 0.0741 -9.1430 1.2533 36 1 -0.6096 -11.3540 0.3641 37 1 -0.6103 -11.3532 2.1438 38 1 0.4654 -13.4032 1.2546 39 1 1.6372 -12.4016 2.1450 40 1 1.2643 -12.4369 -0.8844 41 1 2.5990 -13.2075 0.0064 42 1 3.2827 -10.9969 -0.8846 43 1 3.2826 -10.9965 0.8956 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000330907594.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:24:26 Heat of formation + Delta-G solvation = -159.796178 kcal Electronic energy + Delta-G solvation = -20547.351865 eV Core-core repulsion = 17396.407425 eV Total energy + Delta-G solvation = -3150.944440 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.93552 -39.98578 -37.63459 -35.60882 -35.24143 -33.12472 -32.53332 -31.58500 -29.17106 -27.33664 -24.70007 -23.61782 -22.98355 -22.14393 -21.07407 -20.70851 -18.83117 -17.92269 -17.45497 -17.04086 -16.55855 -16.37518 -16.17039 -15.95191 -15.13317 -14.87709 -14.83459 -14.55768 -14.34980 -14.16273 -13.87149 -13.27712 -13.23765 -13.17686 -12.91059 -12.75799 -12.50911 -12.36232 -12.00077 -11.91181 -11.79392 -11.65742 -11.59474 -11.32607 -11.31247 -10.92145 -10.86625 -10.56393 -10.50458 -10.05296 -8.17963 -6.32220 1.42031 1.46794 1.54516 1.71483 2.23557 2.44967 3.14729 3.41163 3.55876 3.75687 3.84856 4.00786 4.09485 4.12015 4.34510 4.39014 4.43119 4.51854 4.55820 4.62663 4.64933 4.65678 4.68802 4.83048 4.91669 5.03371 5.09353 5.20159 5.26120 5.29054 5.30229 5.39113 5.45473 5.48353 5.53384 5.59404 5.63181 5.85325 6.17803 6.60643 6.76774 6.86070 7.34949 7.38243 8.94581 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.049568 B = 0.002807 C = 0.002707 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 564.748249 B = 9971.525777 C =10341.216243 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C -0.008 4.008 3 Si 0.975 3.025 4 H -0.262 1.262 5 H -0.287 1.287 6 H -0.262 1.262 7 C -0.545 4.545 8 H 0.075 0.925 9 C 0.042 3.958 10 C -0.120 4.120 11 C 0.509 3.491 12 O -0.591 6.591 13 N -0.714 5.714 14 C 0.084 3.916 15 C 0.116 3.884 16 H 0.108 0.892 17 O -0.563 6.563 18 C -0.107 4.107 19 C -0.121 4.121 20 C -0.119 4.119 21 C -0.119 4.119 22 C -0.119 4.119 23 C -0.104 4.104 24 H 0.263 0.737 25 H -0.018 1.018 26 H -0.018 1.018 27 H 0.103 0.897 28 H 0.103 0.897 29 H 0.416 0.584 30 H 0.058 0.942 31 H 0.067 0.933 32 H 0.387 0.613 33 H 0.077 0.923 34 H 0.067 0.933 35 H 0.057 0.943 36 H 0.060 0.940 37 H 0.063 0.937 38 H 0.065 0.935 39 H 0.061 0.939 40 H 0.061 0.939 41 H 0.068 0.932 42 H 0.068 0.932 43 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.702 -26.716 0.567 27.810 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.205 4.205 3 Si 0.798 3.202 4 H -0.187 1.187 5 H -0.213 1.213 6 H -0.187 1.187 7 C -0.583 4.583 8 H 0.094 0.906 9 C 0.005 3.995 10 C -0.160 4.160 11 C 0.298 3.702 12 O -0.471 6.471 13 N -0.367 5.367 14 C -0.040 4.040 15 C 0.057 3.943 16 H 0.126 0.874 17 O -0.370 6.370 18 C -0.126 4.126 19 C -0.158 4.158 20 C -0.157 4.157 21 C -0.157 4.157 22 C -0.156 4.156 23 C -0.141 4.141 24 H 0.072 0.928 25 H 0.000 1.000 26 H 0.000 1.000 27 H 0.121 0.879 28 H 0.121 0.879 29 H 0.253 0.747 30 H 0.076 0.924 31 H 0.085 0.915 32 H 0.236 0.764 33 H 0.095 0.905 34 H 0.086 0.914 35 H 0.075 0.925 36 H 0.079 0.921 37 H 0.082 0.918 38 H 0.084 0.916 39 H 0.080 0.920 40 H 0.079 0.921 41 H 0.086 0.914 42 H 0.087 0.913 43 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 7.174 -26.593 1.007 27.562 hybrid contribution -0.428 1.002 -0.348 1.143 sum 6.746 -25.591 0.659 26.474 Atomic orbital electron populations 1.70171 1.08323 1.27898 1.51414 1.26156 0.95749 1.03998 0.94607 0.85359 0.78044 0.77257 0.79492 1.18670 1.21287 1.18680 1.21696 0.93996 0.91655 1.50914 0.90638 1.18683 0.93699 0.92472 0.94663 1.21633 0.99317 0.90254 1.04751 1.21332 0.87784 0.86854 0.74256 1.90647 1.16662 1.88453 1.51365 1.45821 1.11029 1.04549 1.75310 1.22220 0.95792 0.83728 1.02281 1.22085 0.91227 0.91255 0.89749 0.87375 1.86555 1.37645 1.96290 1.16545 1.21735 0.97140 0.94210 0.99500 1.21645 0.98569 0.97940 0.97680 1.21518 0.97860 0.94311 1.01973 1.21548 0.97680 0.98099 0.98361 1.21538 0.98692 0.97260 0.98131 1.21441 0.97034 0.93231 1.02436 0.92829 0.99978 0.99954 0.87868 0.87904 0.74695 0.92353 0.91468 0.76350 0.90480 0.91447 0.92466 0.92147 0.91845 0.91591 0.91977 0.92067 0.91375 0.91324 0.92066 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -60.20 13.29 21.45 0.28 -59.92 16 2 C -0.01 -0.45 5.46 84.66 0.46 0.01 16 3 Si 0.97 44.71 29.54 68.60 2.03 46.74 16 4 H -0.26 -11.34 7.11 99.48 0.71 -10.63 16 5 H -0.29 -13.05 7.11 99.48 0.71 -12.35 16 6 H -0.26 -11.34 7.11 99.48 0.71 -10.63 16 7 C -0.54 -31.48 9.11 25.60 0.23 -31.25 16 8 H 0.08 3.96 7.74 -2.91 -0.02 3.94 16 9 C 0.04 2.41 4.26 29.85 0.13 2.54 16 10 C -0.12 -4.93 5.64 29.85 0.17 -4.76 16 11 C 0.51 20.09 7.83 87.66 0.69 20.78 16 12 O -0.59 -29.45 15.98 -3.02 -0.05 -29.50 16 13 N -0.71 -19.56 5.45 -463.06 -2.52 -22.08 16 14 C 0.08 1.94 4.99 86.38 0.43 2.37 16 15 C 0.12 1.85 2.64 30.60 0.08 1.93 16 16 H 0.11 1.68 8.14 -2.39 -0.02 1.66 16 17 O -0.56 -8.98 12.41 -148.98 -1.85 -10.83 16 18 C -0.11 -1.44 1.96 -10.79 -0.02 -1.46 16 19 C -0.12 -1.76 4.85 30.59 0.15 -1.61 16 20 C -0.12 -1.56 5.92 30.59 0.18 -1.38 16 21 C -0.12 -1.34 5.92 30.60 0.18 -1.16 16 22 C -0.12 -1.30 5.92 30.59 0.18 -1.12 16 23 C -0.10 -1.26 5.06 30.59 0.15 -1.11 16 24 H 0.26 15.81 8.31 -92.71 -0.77 15.04 16 25 H -0.02 -1.17 8.10 -2.39 -0.02 -1.19 16 26 H -0.02 -1.15 8.10 -2.39 -0.02 -1.17 16 27 H 0.10 3.74 8.14 -2.39 -0.02 3.72 16 28 H 0.10 3.74 8.14 -2.39 -0.02 3.72 16 29 H 0.42 9.07 8.35 -92.71 -0.77 8.29 16 30 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 31 H 0.07 1.70 6.43 -2.39 -0.02 1.69 16 32 H 0.39 4.35 9.05 -74.06 -0.67 3.68 16 33 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 34 H 0.07 0.95 8.14 -2.39 -0.02 0.94 16 35 H 0.06 0.99 6.43 -2.39 -0.02 0.97 16 36 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 37 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 38 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 39 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 40 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 41 H 0.07 0.66 8.14 -2.39 -0.02 0.65 16 42 H 0.07 0.86 7.68 -2.39 -0.02 0.85 16 43 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 Total: -1.00 -76.31 343.57 0.45 -75.86 By element: Atomic # 1 Polarization: 16.41 SS G_CDS: -0.46 Total: 15.95 kcal Atomic # 6 Polarization: -19.24 SS G_CDS: 3.01 Total: -16.23 kcal Atomic # 7 Polarization: -79.76 SS G_CDS: -2.24 Total: -82.00 kcal Atomic # 8 Polarization: -38.43 SS G_CDS: -1.90 Total: -40.32 kcal Atomic # 14 Polarization: 44.71 SS G_CDS: 2.03 Total: 46.74 kcal Total: -76.31 0.45 -75.86 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330907594.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.932 kcal (2) G-P(sol) polarization free energy of solvation -76.314 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -160.246 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.449 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.864 kcal (6) G-S(sol) free energy of system = (1) + (5) -159.796 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds