Wall clock time and date at job start Mon Mar 30 2020 01:27:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86805 * 119.99696 * 2 1 4 4 H 1.48497 * 109.47052 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47156 * 299.99764 * 3 2 1 6 6 H 1.48498 * 109.47200 * 59.99749 * 3 2 1 7 7 C 1.37869 * 120.00194 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00285 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00278 * 359.97438 * 7 2 1 10 10 C 1.52996 * 109.47491 * 179.97438 * 9 7 2 11 11 C 1.50702 * 109.47159 * 179.97438 * 10 9 7 12 12 O 1.21283 * 120.00262 * 0.02562 * 11 10 9 13 13 N 1.34777 * 119.99928 * 179.72352 * 11 10 9 14 14 C 1.46499 * 120.00199 * 180.27479 * 13 11 10 15 15 C 1.52997 * 109.47555 * 180.02562 * 14 13 11 16 16 O 1.42905 * 108.86869 * 65.00227 * 15 14 13 17 17 C 1.54242 * 108.89803 * 306.40079 * 15 14 13 18 18 C 1.50546 * 108.48831 * 159.17385 * 17 15 14 19 19 C 1.54069 * 112.41405 * 94.26489 * 18 17 15 20 20 C 1.54066 * 112.81889 * 318.28016 * 19 18 17 21 21 C 1.50477 * 112.49496 * 318.28870 * 20 19 18 22 22 C 1.45542 * 108.89772 * 183.60325 * 15 14 13 23 23 H 0.97004 * 120.00291 * 0.02562 * 1 2 3 24 24 H 1.09004 * 109.46801 * 59.99998 * 9 7 2 25 25 H 1.09000 * 109.47461 * 300.00530 * 9 7 2 26 26 H 1.09004 * 109.47066 * 60.00201 * 10 9 7 27 27 H 1.08994 * 109.47405 * 300.00031 * 10 9 7 28 28 H 0.97000 * 120.00317 * 0.28382 * 13 11 10 29 29 H 1.08998 * 109.47134 * 300.00670 * 14 13 11 30 30 H 1.09002 * 109.46857 * 59.99862 * 14 13 11 31 31 H 0.96699 * 114.00110 * 299.99595 * 16 15 14 32 32 H 1.08998 * 109.62343 * 278.97504 * 17 15 14 33 33 H 1.09004 * 109.62705 * 39.54344 * 17 15 14 34 34 H 1.09003 * 108.92425 * 333.51302 * 18 17 15 35 35 H 1.08997 * 108.92310 * 215.01753 * 18 17 15 36 36 H 1.09007 * 108.81271 * 197.42034 * 19 18 17 37 37 H 1.09000 * 108.72902 * 79.08306 * 19 18 17 38 38 H 1.08992 * 108.88036 * 197.50736 * 20 19 18 39 39 H 1.09001 * 108.87453 * 79.06169 * 20 19 18 40 40 H 1.09002 * 109.62906 * 334.43655 * 21 20 19 41 41 H 1.09005 * 109.62897 * 213.86246 * 21 20 19 42 42 H 1.08991 * 108.89726 * 303.44353 * 22 15 14 43 43 H 1.09006 * 108.88913 * 62.03635 * 22 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8903 2.3965 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0017 10 6 2.2454 -3.6620 0.0015 11 6 1.4919 -4.9671 0.0033 12 8 0.2791 -4.9672 0.0041 13 7 2.1658 -6.1343 -0.0023 14 6 1.4334 -7.4030 -0.0066 15 6 2.4276 -8.5659 -0.0118 16 8 3.1632 -8.5506 1.2133 17 6 3.4096 -8.3784 -1.1864 18 6 4.6500 -9.1837 -0.9049 19 6 4.6000 -10.5834 -1.5467 20 6 3.2201 -11.2548 -1.4092 21 6 2.6136 -11.0504 -0.0473 22 6 1.6893 -9.8169 -0.1026 23 1 -0.4851 0.8401 -0.0004 24 1 0.6241 -2.5574 -0.8880 25 1 0.6247 -2.5563 0.8919 26 1 2.8727 -3.6038 0.8910 27 1 2.8713 -3.6047 -0.8890 28 1 3.1358 -6.1343 -0.0032 29 1 0.8077 -7.4644 0.8838 30 1 0.8057 -7.4571 -0.8961 31 1 3.6669 -7.7382 1.3595 32 1 2.9466 -8.7266 -2.1097 33 1 3.6716 -7.3245 -1.2799 34 1 4.7625 -9.2942 0.1737 35 1 5.5154 -8.6477 -1.2946 36 1 5.3480 -11.2162 -1.0689 37 1 4.8424 -10.4918 -2.6055 38 1 3.3286 -12.3241 -1.5900 39 1 2.5489 -10.8384 -2.1603 40 1 3.4041 -10.8831 0.6843 41 1 2.0336 -11.9304 0.2310 42 1 0.9807 -9.8694 0.7239 43 1 1.1369 -9.8333 -1.0422 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000332039084.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:27:45 Heat of formation + Delta-G solvation = -117.227346 kcal Electronic energy + Delta-G solvation = -21153.670902 eV Core-core repulsion = 18004.572385 eV Total energy + Delta-G solvation = -3149.098517 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.62096 -38.80865 -35.95701 -34.09901 -33.45373 -32.65853 -31.51989 -30.81141 -27.34271 -25.59528 -24.98519 -23.22116 -21.43366 -20.50799 -19.89155 -19.36544 -17.32437 -16.84708 -16.29000 -15.77706 -15.40778 -15.24427 -14.98074 -14.45771 -14.28278 -14.05570 -13.66208 -13.30420 -13.11443 -12.95781 -12.46429 -12.20982 -12.16984 -11.86210 -11.62691 -11.35006 -11.16685 -10.95235 -10.84320 -10.71847 -10.62444 -10.56811 -10.47671 -10.00581 -9.97434 -9.67875 -9.18971 -9.01716 -8.83465 -8.32902 -5.96685 -4.01191 3.23206 3.32145 3.38620 3.41652 3.46607 3.98822 4.31727 4.43893 4.47183 4.48512 4.76820 4.83134 4.95496 5.02769 5.08062 5.23241 5.38335 5.42737 5.50636 5.54054 5.56949 5.67967 5.75362 5.81528 5.90734 5.93670 5.94852 5.97832 6.04881 6.17898 6.20583 6.21749 6.26958 6.65076 6.87284 7.39481 7.73799 7.80744 7.85371 8.06508 8.37844 8.75157 9.07620 9.62508 11.14288 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.041494 B = 0.003216 C = 0.003088 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 674.641475 B = 8705.435757 C = 9064.471901 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.057 3.943 3 Si 0.893 3.107 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.527 4.527 8 H 0.056 0.944 9 C 0.036 3.964 10 C -0.130 4.130 11 C 0.509 3.491 12 O -0.532 6.532 13 N -0.745 5.745 14 C 0.090 3.910 15 C 0.134 3.866 16 O -0.551 6.551 17 C -0.147 4.147 18 C -0.128 4.128 19 C -0.114 4.114 20 C -0.121 4.121 21 C -0.111 4.111 22 C -0.110 4.110 23 H 0.260 0.740 24 H 0.023 0.977 25 H 0.023 0.977 26 H 0.079 0.921 27 H 0.079 0.921 28 H 0.393 0.607 29 H 0.072 0.928 30 H 0.071 0.929 31 H 0.373 0.627 32 H 0.076 0.924 33 H 0.071 0.929 34 H 0.082 0.918 35 H 0.057 0.943 36 H 0.056 0.944 37 H 0.054 0.946 38 H 0.056 0.944 39 H 0.059 0.941 40 H 0.078 0.922 41 H 0.061 0.939 42 H 0.071 0.929 43 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.791 -22.938 -1.898 25.012 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.144 4.144 3 Si 0.721 3.279 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.565 4.565 8 H 0.074 0.926 9 C -0.001 4.001 10 C -0.170 4.170 11 C 0.298 3.702 12 O -0.407 6.407 13 N -0.401 5.401 14 C -0.034 4.034 15 C 0.093 3.907 16 O -0.357 6.357 17 C -0.185 4.185 18 C -0.165 4.165 19 C -0.152 4.152 20 C -0.158 4.158 21 C -0.149 4.149 22 C -0.148 4.148 23 H 0.070 0.930 24 H 0.042 0.958 25 H 0.042 0.958 26 H 0.098 0.902 27 H 0.097 0.903 28 H 0.228 0.772 29 H 0.090 0.910 30 H 0.089 0.911 31 H 0.221 0.779 32 H 0.095 0.905 33 H 0.089 0.911 34 H 0.101 0.899 35 H 0.076 0.924 36 H 0.075 0.925 37 H 0.073 0.927 38 H 0.075 0.925 39 H 0.078 0.922 40 H 0.096 0.904 41 H 0.079 0.921 42 H 0.089 0.911 43 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 8.455 -23.403 -1.840 24.952 hybrid contribution 1.084 1.515 -0.177 1.871 sum 9.539 -21.888 -2.018 23.961 Atomic orbital electron populations 1.70009 1.06061 1.26483 1.50259 1.25031 0.94829 0.99260 0.95313 0.86533 0.79995 0.83830 0.77589 1.19746 1.21020 1.21012 1.21253 0.92951 0.91000 1.51288 0.92557 1.18902 0.93185 0.89400 0.98629 1.21869 1.00730 0.91955 1.02441 1.21581 0.88679 0.85601 0.74357 1.90676 1.14508 1.87602 1.47931 1.46268 1.09747 1.05697 1.78406 1.22087 0.95092 0.83254 1.03005 1.20158 0.90765 0.94970 0.84804 1.86615 1.65828 1.43401 1.39833 1.22068 0.96784 1.00755 0.98914 1.21362 0.97022 0.95125 1.03030 1.21879 0.96964 0.96029 1.00318 1.21384 0.96775 1.00005 0.97663 1.21204 0.99312 0.96644 0.97725 1.20445 0.98243 0.93103 1.03016 0.92994 0.95846 0.95815 0.90239 0.90273 0.77178 0.90964 0.91118 0.77915 0.90543 0.91065 0.89920 0.92427 0.92475 0.92683 0.92530 0.92229 0.90372 0.92069 0.91060 0.90518 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.50 13.29 55.43 0.74 -26.77 16 2 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 3 Si 0.89 21.66 29.54 -169.99 -5.02 16.64 16 4 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 5 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 6 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 7 C -0.53 -14.93 9.11 -34.44 -0.31 -15.25 16 8 H 0.06 1.50 7.74 -52.49 -0.41 1.10 16 9 C 0.04 0.98 4.26 -27.89 -0.12 0.86 16 10 C -0.13 -2.60 5.64 -27.88 -0.16 -2.76 16 11 C 0.51 9.66 7.83 -10.98 -0.09 9.57 16 12 O -0.53 -12.62 15.98 5.55 0.09 -12.53 16 13 N -0.74 -9.87 4.80 -60.29 -0.29 -10.16 16 14 C 0.09 1.10 4.71 -4.04 -0.02 1.08 16 15 C 0.13 1.23 0.62 -93.49 -0.06 1.17 16 16 O -0.55 -5.16 9.99 -35.23 -0.35 -5.51 16 17 C -0.15 -1.21 4.70 -27.31 -0.13 -1.34 16 18 C -0.13 -0.96 5.25 -27.40 -0.14 -1.11 16 19 C -0.11 -0.82 5.85 -25.62 -0.15 -0.97 16 20 C -0.12 -0.87 5.31 -27.43 -0.15 -1.01 16 21 C -0.11 -0.88 5.57 -27.34 -0.15 -1.03 16 22 C -0.11 -0.96 4.12 -29.60 -0.12 -1.08 16 23 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 24 H 0.02 0.69 8.10 -51.93 -0.42 0.27 16 25 H 0.02 0.70 8.10 -51.93 -0.42 0.28 16 26 H 0.08 1.44 8.14 -51.93 -0.42 1.02 16 27 H 0.08 1.44 8.14 -51.93 -0.42 1.01 16 28 H 0.39 3.93 6.31 -40.82 -0.26 3.68 16 29 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 30 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 31 H 0.37 2.74 8.12 45.56 0.37 3.11 16 32 H 0.08 0.65 6.97 -51.93 -0.36 0.28 16 33 H 0.07 0.59 6.06 -51.93 -0.31 0.28 16 34 H 0.08 0.66 5.46 -51.93 -0.28 0.38 16 35 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 36 H 0.06 0.39 8.14 -51.92 -0.42 -0.03 16 37 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 38 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 39 H 0.06 0.43 6.62 -51.93 -0.34 0.09 16 40 H 0.08 0.70 6.24 -51.93 -0.32 0.37 16 41 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 42 H 0.07 0.66 8.11 -51.93 -0.42 0.24 16 43 H 0.08 0.62 7.46 -51.93 -0.39 0.23 16 LS Contribution 330.22 15.07 4.98 4.98 Total: -1.00 -33.92 330.22 -8.06 -41.99 By element: Atomic # 1 Polarization: 8.17 SS G_CDS: -6.51 Total: 1.66 kcal Atomic # 6 Polarization: -8.59 SS G_CDS: -1.69 Total: -10.29 kcal Atomic # 7 Polarization: -37.38 SS G_CDS: 0.45 Total: -36.93 kcal Atomic # 8 Polarization: -17.78 SS G_CDS: -0.26 Total: -18.04 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -33.92 -8.06 -41.99 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000332039084.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.242 kcal (2) G-P(sol) polarization free energy of solvation -33.921 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.163 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.985 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.227 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds