Wall clock time and date at job start Mon Mar 30 2020 01:27:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86805 * 119.99696 * 2 1 4 4 H 1.48497 * 109.47052 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47156 * 299.99764 * 3 2 1 6 6 H 1.48498 * 109.47200 * 59.99749 * 3 2 1 7 7 C 1.37869 * 120.00194 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00285 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00278 * 359.97438 * 7 2 1 10 10 C 1.52996 * 109.47491 * 179.97438 * 9 7 2 11 11 C 1.50702 * 109.47159 * 179.97438 * 10 9 7 12 12 O 1.21283 * 120.00262 * 0.02562 * 11 10 9 13 13 N 1.34777 * 119.99928 * 179.72352 * 11 10 9 14 14 C 1.46499 * 120.00199 * 180.27479 * 13 11 10 15 15 C 1.52997 * 109.47555 * 180.02562 * 14 13 11 16 16 O 1.42905 * 108.86869 * 65.00227 * 15 14 13 17 17 C 1.54242 * 108.89803 * 306.40079 * 15 14 13 18 18 C 1.50546 * 108.48831 * 159.17385 * 17 15 14 19 19 C 1.54069 * 112.41405 * 94.26489 * 18 17 15 20 20 C 1.54066 * 112.81889 * 318.28016 * 19 18 17 21 21 C 1.50477 * 112.49496 * 318.28870 * 20 19 18 22 22 C 1.45542 * 108.89772 * 183.60325 * 15 14 13 23 23 H 0.97004 * 120.00291 * 0.02562 * 1 2 3 24 24 H 1.09004 * 109.46801 * 59.99998 * 9 7 2 25 25 H 1.09000 * 109.47461 * 300.00530 * 9 7 2 26 26 H 1.09004 * 109.47066 * 60.00201 * 10 9 7 27 27 H 1.08994 * 109.47405 * 300.00031 * 10 9 7 28 28 H 0.97000 * 120.00317 * 0.28382 * 13 11 10 29 29 H 1.08998 * 109.47134 * 300.00670 * 14 13 11 30 30 H 1.09002 * 109.46857 * 59.99862 * 14 13 11 31 31 H 0.96699 * 114.00110 * 299.99595 * 16 15 14 32 32 H 1.08998 * 109.62343 * 278.97504 * 17 15 14 33 33 H 1.09004 * 109.62705 * 39.54344 * 17 15 14 34 34 H 1.09003 * 108.92425 * 333.51302 * 18 17 15 35 35 H 1.08997 * 108.92310 * 215.01753 * 18 17 15 36 36 H 1.09007 * 108.81271 * 197.42034 * 19 18 17 37 37 H 1.09000 * 108.72902 * 79.08306 * 19 18 17 38 38 H 1.08992 * 108.88036 * 197.50736 * 20 19 18 39 39 H 1.09001 * 108.87453 * 79.06169 * 20 19 18 40 40 H 1.09002 * 109.62906 * 334.43655 * 21 20 19 41 41 H 1.09005 * 109.62897 * 213.86246 * 21 20 19 42 42 H 1.08991 * 108.89726 * 303.44353 * 22 15 14 43 43 H 1.09006 * 108.88913 * 62.03635 * 22 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8903 2.3965 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0017 10 6 2.2454 -3.6620 0.0015 11 6 1.4919 -4.9671 0.0033 12 8 0.2791 -4.9672 0.0041 13 7 2.1658 -6.1343 -0.0023 14 6 1.4334 -7.4030 -0.0066 15 6 2.4276 -8.5659 -0.0118 16 8 3.1632 -8.5506 1.2133 17 6 3.4096 -8.3784 -1.1864 18 6 4.6500 -9.1837 -0.9049 19 6 4.6000 -10.5834 -1.5467 20 6 3.2201 -11.2548 -1.4092 21 6 2.6136 -11.0504 -0.0473 22 6 1.6893 -9.8169 -0.1026 23 1 -0.4851 0.8401 -0.0004 24 1 0.6241 -2.5574 -0.8880 25 1 0.6247 -2.5563 0.8919 26 1 2.8727 -3.6038 0.8910 27 1 2.8713 -3.6047 -0.8890 28 1 3.1358 -6.1343 -0.0032 29 1 0.8077 -7.4644 0.8838 30 1 0.8057 -7.4571 -0.8961 31 1 3.6669 -7.7382 1.3595 32 1 2.9466 -8.7266 -2.1097 33 1 3.6716 -7.3245 -1.2799 34 1 4.7625 -9.2942 0.1737 35 1 5.5154 -8.6477 -1.2946 36 1 5.3480 -11.2162 -1.0689 37 1 4.8424 -10.4918 -2.6055 38 1 3.3286 -12.3241 -1.5900 39 1 2.5489 -10.8384 -2.1603 40 1 3.4041 -10.8831 0.6843 41 1 2.0336 -11.9304 0.2310 42 1 0.9807 -9.8694 0.7239 43 1 1.1369 -9.8333 -1.0422 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000332039084.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:27:44 Heat of formation + Delta-G solvation = -141.309789 kcal Electronic energy + Delta-G solvation = -21154.715195 eV Core-core repulsion = 18004.572385 eV Total energy + Delta-G solvation = -3150.142810 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.52678 -40.19663 -36.73406 -35.59654 -35.24286 -33.37052 -33.02306 -32.06754 -28.63226 -27.12102 -25.78261 -24.29873 -23.10732 -21.43382 -21.13303 -20.05062 -18.92004 -17.99329 -17.52962 -17.13688 -16.65056 -16.42122 -16.39689 -15.71444 -15.28381 -15.19061 -14.55043 -14.37055 -14.25082 -14.14150 -13.85582 -13.59576 -13.22988 -13.07153 -12.85019 -12.76004 -12.44375 -12.31297 -12.01529 -11.92601 -11.64629 -11.50490 -11.32673 -11.29070 -11.25159 -11.06348 -10.86892 -10.65278 -10.58096 -10.12258 -8.18017 -6.32079 1.42656 1.43988 1.57270 1.69830 2.18816 2.44446 3.15222 3.25191 3.51844 3.68576 3.85471 4.03001 4.15787 4.21463 4.29104 4.39732 4.43392 4.49313 4.51830 4.58235 4.62898 4.74780 4.87802 4.97225 5.02134 5.08516 5.12870 5.23395 5.31202 5.33970 5.38344 5.39498 5.44590 5.51405 5.56133 5.63218 5.67560 5.85746 6.17575 6.53766 6.74258 6.86976 7.31923 7.38520 8.94903 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.041494 B = 0.003216 C = 0.003088 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 674.641475 B = 8705.435757 C = 9064.471901 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C -0.009 4.009 3 Si 0.974 3.026 4 H -0.251 1.251 5 H -0.281 1.281 6 H -0.281 1.281 7 C -0.541 4.541 8 H 0.077 0.923 9 C 0.041 3.959 10 C -0.119 4.119 11 C 0.511 3.489 12 O -0.590 6.590 13 N -0.715 5.715 14 C 0.090 3.910 15 C 0.148 3.852 16 O -0.557 6.557 17 C -0.143 4.143 18 C -0.125 4.125 19 C -0.115 4.115 20 C -0.121 4.121 21 C -0.105 4.105 22 C -0.115 4.115 23 H 0.262 0.738 24 H -0.019 1.019 25 H -0.019 1.019 26 H 0.106 0.894 27 H 0.106 0.894 28 H 0.414 0.586 29 H 0.054 0.946 30 H 0.063 0.937 31 H 0.383 0.617 32 H 0.077 0.923 33 H 0.073 0.927 34 H 0.079 0.921 35 H 0.065 0.935 36 H 0.060 0.940 37 H 0.058 0.942 38 H 0.064 0.936 39 H 0.059 0.941 40 H 0.070 0.930 41 H 0.067 0.933 42 H 0.061 0.939 43 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.765 -23.484 -2.234 26.822 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.206 4.206 3 Si 0.798 3.202 4 H -0.175 1.175 5 H -0.207 1.207 6 H -0.207 1.207 7 C -0.579 4.579 8 H 0.096 0.904 9 C 0.003 3.997 10 C -0.159 4.159 11 C 0.299 3.701 12 O -0.469 6.469 13 N -0.371 5.371 14 C -0.034 4.034 15 C 0.107 3.893 16 O -0.364 6.364 17 C -0.181 4.181 18 C -0.162 4.162 19 C -0.153 4.153 20 C -0.158 4.158 21 C -0.143 4.143 22 C -0.153 4.153 23 H 0.071 0.929 24 H 0.000 1.000 25 H -0.001 1.001 26 H 0.125 0.875 27 H 0.124 0.876 28 H 0.253 0.747 29 H 0.072 0.928 30 H 0.081 0.919 31 H 0.232 0.768 32 H 0.095 0.905 33 H 0.091 0.909 34 H 0.098 0.902 35 H 0.083 0.917 36 H 0.079 0.921 37 H 0.077 0.923 38 H 0.083 0.917 39 H 0.077 0.923 40 H 0.088 0.912 41 H 0.085 0.915 42 H 0.080 0.920 43 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 11.509 -23.994 -2.173 26.700 hybrid contribution 0.134 1.610 -0.057 1.617 sum 11.643 -22.384 -2.231 25.329 Atomic orbital electron populations 1.70188 1.08349 1.27728 1.51610 1.26154 0.95725 1.04019 0.94699 0.85264 0.79365 0.78061 0.77491 1.17462 1.20689 1.20730 1.21750 0.94049 0.91545 1.50541 0.90450 1.18700 0.93769 0.92602 0.94640 1.21643 0.99286 0.89923 1.05018 1.21381 0.87805 0.86814 0.74054 1.90665 1.16888 1.88404 1.50989 1.45895 1.10728 1.04567 1.75866 1.22207 0.95834 0.83546 1.01833 1.20031 0.90226 0.93561 0.85441 1.86622 1.65821 1.44117 1.39842 1.22046 0.96787 1.01079 0.98225 1.21329 0.96698 0.95295 1.02876 1.21892 0.96972 0.95845 1.00573 1.21379 0.96783 1.00603 0.97032 1.21152 0.98865 0.96250 0.98027 1.20503 0.98390 0.93380 1.03024 0.92890 1.00019 1.00069 0.87539 0.87551 0.74724 0.92761 0.91852 0.76821 0.90473 0.90853 0.90242 0.91653 0.92112 0.92311 0.91733 0.92265 0.91179 0.91467 0.91995 0.89897 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.77 13.29 21.44 0.28 -59.48 16 2 C -0.01 -0.51 5.46 84.65 0.46 -0.04 16 3 Si 0.97 44.18 29.54 68.60 2.03 46.21 16 4 H -0.25 -10.43 7.11 99.48 0.71 -9.72 16 5 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 6 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 7 C -0.54 -30.63 9.11 25.60 0.23 -30.40 16 8 H 0.08 3.96 7.74 -2.91 -0.02 3.94 16 9 C 0.04 2.25 4.26 29.85 0.13 2.38 16 10 C -0.12 -4.65 5.64 29.85 0.17 -4.48 16 11 C 0.51 19.36 7.83 87.66 0.69 20.04 16 12 O -0.59 -29.12 15.98 -3.04 -0.05 -29.17 16 13 N -0.71 -17.99 4.80 -463.06 -2.22 -20.21 16 14 C 0.09 2.16 4.71 86.38 0.41 2.56 16 15 C 0.15 2.50 0.62 -12.65 -0.01 2.50 16 16 O -0.56 -9.39 9.99 -148.98 -1.49 -10.88 16 17 C -0.14 -2.03 4.70 30.22 0.14 -1.89 16 18 C -0.12 -1.55 5.25 30.16 0.16 -1.39 16 19 C -0.12 -1.37 5.85 31.32 0.18 -1.19 16 20 C -0.12 -1.47 5.31 30.14 0.16 -1.31 16 21 C -0.11 -1.49 5.57 30.20 0.17 -1.32 16 22 C -0.12 -1.88 4.12 28.74 0.12 -1.76 16 23 H 0.26 15.60 8.31 -92.71 -0.77 14.83 16 24 H -0.02 -1.18 8.10 -2.38 -0.02 -1.19 16 25 H -0.02 -1.21 8.10 -2.39 -0.02 -1.23 16 26 H 0.11 3.59 8.14 -2.38 -0.02 3.57 16 27 H 0.11 3.59 8.14 -2.39 -0.02 3.57 16 28 H 0.41 7.12 6.31 -92.71 -0.58 6.53 16 29 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 30 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 31 H 0.38 4.67 8.12 -74.06 -0.60 4.07 16 32 H 0.08 1.12 6.97 -2.39 -0.02 1.11 16 33 H 0.07 1.00 6.06 -2.38 -0.01 0.99 16 34 H 0.08 1.07 5.46 -2.39 -0.01 1.06 16 35 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 36 H 0.06 0.69 8.14 -2.38 -0.02 0.67 16 37 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 38 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 39 H 0.06 0.74 6.62 -2.39 -0.02 0.72 16 40 H 0.07 1.12 6.24 -2.39 -0.01 1.11 16 41 H 0.07 0.87 8.14 -2.38 -0.02 0.85 16 42 H 0.06 1.12 8.11 -2.39 -0.02 1.11 16 43 H 0.08 1.24 7.46 -2.38 -0.02 1.23 16 Total: -1.00 -76.48 330.22 1.38 -75.11 By element: Atomic # 1 Polarization: 14.91 SS G_CDS: -0.18 Total: 14.72 kcal Atomic # 6 Polarization: -19.30 SS G_CDS: 3.01 Total: -16.30 kcal Atomic # 7 Polarization: -77.76 SS G_CDS: -1.94 Total: -79.70 kcal Atomic # 8 Polarization: -38.51 SS G_CDS: -1.54 Total: -40.05 kcal Atomic # 14 Polarization: 44.18 SS G_CDS: 2.03 Total: 46.21 kcal Total: -76.48 1.38 -75.11 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000332039084.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.202 kcal (2) G-P(sol) polarization free energy of solvation -76.484 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.686 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.376 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.107 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.310 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds