Wall clock time and date at job start Mon Mar 30 2020 01:24:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 120.00021 * 2 1 4 4 H 1.48497 * 109.47317 * 0.02562 * 3 2 1 5 5 H 1.48504 * 109.46658 * 120.00629 * 3 2 1 6 6 H 1.48498 * 109.47245 * 240.00390 * 3 2 1 7 7 C 1.37873 * 119.99606 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00397 * 14.39590 * 7 2 1 9 9 C 1.50703 * 119.99883 * 194.39693 * 7 2 1 10 10 O 1.42894 * 112.93780 * 65.59182 * 9 7 2 11 11 C 1.53931 * 113.73329 * 294.02567 * 9 7 2 12 12 N 1.48191 * 86.10382 * 221.95510 * 11 9 7 13 13 C 1.46895 * 111.07148 * 137.51771 * 12 11 9 14 14 C 1.53008 * 109.47096 * 90.57137 * 13 12 11 15 15 H 1.09000 * 109.46758 * 305.00136 * 14 13 12 16 16 O 1.42899 * 109.46841 * 64.99463 * 14 13 12 17 17 C 1.52997 * 109.47116 * 185.00060 * 14 13 12 18 18 C 1.53001 * 109.47082 * 299.99760 * 17 14 13 19 19 C 1.52999 * 109.47124 * 180.02562 * 18 17 14 20 20 C 1.52996 * 109.47186 * 60.00016 * 19 18 17 21 21 C 1.53001 * 109.47076 * 300.00013 * 20 19 18 22 22 C 1.52997 * 109.47082 * 60.00337 * 21 20 19 23 23 C 1.47965 * 90.79408 * 24.59826 * 12 11 9 24 24 H 0.96998 * 120.00288 * 174.86355 * 1 2 3 25 25 H 0.96707 * 114.00278 * 305.72064 * 10 9 7 26 26 H 1.09008 * 113.76207 * 336.23596 * 11 9 7 27 27 H 1.09000 * 113.75973 * 107.60215 * 11 9 7 28 28 H 1.09001 * 109.47243 * 210.56461 * 13 12 11 29 29 H 1.09004 * 109.47471 * 330.57264 * 13 12 11 30 30 H 0.96700 * 113.99777 * 60.00772 * 16 14 13 31 31 H 1.08998 * 109.47351 * 59.99553 * 17 14 13 32 32 H 1.09004 * 109.46896 * 300.00534 * 18 17 14 33 33 H 1.08999 * 109.47343 * 60.00048 * 18 17 14 34 34 H 1.08998 * 109.47014 * 299.99612 * 19 18 17 35 35 H 1.09003 * 109.46907 * 179.97438 * 19 18 17 36 36 H 1.09001 * 109.47608 * 180.02562 * 20 19 18 37 37 H 1.08998 * 109.47474 * 59.99878 * 20 19 18 38 38 H 1.09004 * 109.46896 * 299.99803 * 21 20 19 39 39 H 1.09007 * 109.47100 * 180.02562 * 21 20 19 40 40 H 1.09003 * 109.46865 * 180.02562 * 22 21 20 41 41 H 1.08998 * 109.47351 * 60.00206 * 22 21 20 42 42 H 1.08994 * 113.75787 * 221.07950 * 23 12 11 43 43 H 1.09008 * 113.85381 * 89.73740 * 23 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 0.0006 5 1 3.1030 1.6962 1.2125 6 1 3.1028 1.6965 -1.2125 7 6 2.0044 -1.1941 -0.0005 8 1 1.4899 -2.1146 -0.2335 9 6 3.4760 -1.2148 0.3240 10 8 3.7543 -0.8324 1.6724 11 6 4.3503 -0.4936 -0.7176 12 7 5.2902 -1.6292 -0.5662 13 6 5.8076 -2.0640 -1.8704 14 6 7.0937 -1.2990 -2.1897 15 1 6.9024 -0.2274 -2.1333 16 8 8.1054 -1.6527 -1.2444 17 6 7.5648 -1.6595 -3.6000 18 6 7.8332 -3.1637 -3.6791 19 6 8.3049 -3.5241 -5.0892 20 6 9.5910 -2.7591 -5.4079 21 6 9.3225 -1.2549 -5.3288 22 6 8.8510 -0.8945 -3.9186 23 6 4.1887 -2.5072 -0.1132 24 1 -0.4850 -0.8366 -0.0752 25 1 3.3816 0.0239 1.9234 26 1 3.8941 -0.4298 -1.7056 27 1 4.7511 0.4589 -0.3707 28 1 6.0190 -3.1329 -1.8394 29 1 5.0642 -1.8628 -2.6417 30 1 8.3271 -2.5939 -1.2394 31 1 6.7930 -1.3898 -4.3209 32 1 8.6049 -3.4334 -2.9581 33 1 6.9171 -3.7087 -3.4516 34 1 7.5334 -3.2543 -5.8104 35 1 8.4966 -4.5957 -5.1454 36 1 9.9268 -3.0155 -6.4127 37 1 10.3624 -3.0289 -4.6867 38 1 8.5511 -0.9851 -6.0501 39 1 10.2387 -0.7099 -5.5563 40 1 8.6593 0.1771 -3.8624 41 1 9.6224 -1.1643 -3.1974 42 1 4.4606 -3.1607 0.7156 43 1 3.6841 -3.0348 -0.9227 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000332442370.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:24:20 Heat of formation + Delta-G solvation = -85.970875 kcal Electronic energy + Delta-G solvation = -21802.715506 eV Core-core repulsion = 18654.972371 eV Total energy + Delta-G solvation = -3147.743135 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.85712 -38.83773 -36.25985 -34.38732 -32.50100 -31.70591 -30.95273 -29.28349 -26.40737 -25.43876 -24.15775 -22.85885 -21.62397 -20.55646 -19.72235 -19.02745 -17.83539 -16.54404 -15.77496 -15.52855 -15.26706 -14.97758 -14.71464 -14.33497 -14.24237 -13.96590 -13.42467 -13.13991 -12.75138 -12.56740 -12.40044 -12.30323 -12.02298 -11.66156 -11.40730 -11.30242 -11.21814 -10.97095 -10.84112 -10.61399 -10.56741 -10.48773 -10.27876 -10.04336 -9.68973 -9.43313 -9.27945 -8.87463 -8.36196 -7.94355 -6.62312 -4.35626 3.19967 3.28927 3.44869 4.26642 4.27949 4.52589 4.56183 4.63420 4.75852 4.95234 5.00805 5.06935 5.16980 5.23302 5.33730 5.36872 5.38434 5.46595 5.52537 5.59786 5.75263 5.76893 5.81692 5.87108 5.92457 5.97419 5.98399 6.01742 6.06056 6.13170 6.19111 6.29904 6.38111 6.41506 6.55653 6.96030 7.01990 7.71581 7.75788 7.89530 8.16431 8.66903 8.92462 9.39248 10.72472 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.030123 B = 0.004478 C = 0.004384 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 929.302419 B = 6251.091645 C = 6385.893512 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.034 3.966 3 Si 1.046 2.954 4 H -0.282 1.282 5 H -0.279 1.279 6 H -0.275 1.275 7 C -0.619 4.619 8 H 0.063 0.937 9 C 0.206 3.794 10 O -0.564 6.564 11 C -0.038 4.038 12 N -0.463 5.463 13 C -0.015 4.015 14 C 0.123 3.877 15 H 0.095 0.905 16 O -0.546 6.546 17 C -0.120 4.120 18 C -0.120 4.120 19 C -0.118 4.118 20 C -0.119 4.119 21 C -0.120 4.120 22 C -0.108 4.108 23 C 0.024 3.976 24 H 0.271 0.729 25 H 0.362 0.638 26 H 0.071 0.929 27 H 0.069 0.931 28 H 0.069 0.931 29 H 0.047 0.953 30 H 0.364 0.636 31 H 0.076 0.924 32 H 0.063 0.937 33 H 0.065 0.935 34 H 0.061 0.939 35 H 0.059 0.941 36 H 0.057 0.943 37 H 0.061 0.939 38 H 0.059 0.941 39 H 0.059 0.941 40 H 0.060 0.940 41 H 0.069 0.931 42 H 0.077 0.923 43 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.767 -3.941 -10.539 20.193 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.173 4.173 3 Si 0.874 3.126 4 H -0.208 1.208 5 H -0.206 1.206 6 H -0.201 1.201 7 C -0.657 4.657 8 H 0.082 0.918 9 C 0.165 3.835 10 O -0.371 6.371 11 C -0.167 4.167 12 N -0.186 5.186 13 C -0.144 4.144 14 C 0.063 3.937 15 H 0.113 0.887 16 O -0.350 6.350 17 C -0.139 4.139 18 C -0.157 4.157 19 C -0.155 4.155 20 C -0.157 4.157 21 C -0.158 4.158 22 C -0.146 4.146 23 C -0.105 4.105 24 H 0.082 0.918 25 H 0.211 0.789 26 H 0.089 0.911 27 H 0.088 0.912 28 H 0.088 0.912 29 H 0.066 0.934 30 H 0.211 0.789 31 H 0.094 0.906 32 H 0.082 0.918 33 H 0.084 0.916 34 H 0.079 0.921 35 H 0.078 0.922 36 H 0.076 0.924 37 H 0.079 0.921 38 H 0.078 0.922 39 H 0.078 0.922 40 H 0.079 0.921 41 H 0.087 0.913 42 H 0.095 0.905 43 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 17.441 -2.174 -9.963 20.204 hybrid contribution -0.908 -1.927 -1.032 2.367 sum 16.534 -4.101 -10.995 20.275 Atomic orbital electron populations 1.70823 1.06869 1.31216 1.43753 1.25836 0.96287 1.02538 0.92600 0.84056 0.75090 0.75886 0.77540 1.20827 1.20562 1.20139 1.22342 0.93546 0.96354 1.53412 0.91840 1.20269 0.92946 0.90544 0.79741 1.86363 1.79364 1.41207 1.30193 1.25146 0.94305 0.95663 1.01577 1.68566 1.24038 1.05030 1.20929 1.23431 0.97607 0.99728 0.93622 1.21808 0.86221 0.99617 0.86043 0.88747 1.86604 1.57894 1.29408 1.61143 1.21874 0.98306 0.95682 0.98023 1.21637 1.01231 0.95657 0.97194 1.21507 0.97512 0.99504 0.96992 1.21534 0.97674 0.95401 1.01052 1.21552 1.00847 0.95919 0.97439 1.21475 0.97174 0.99559 0.96390 1.23887 0.90833 0.96700 0.99067 0.91847 0.78876 0.91066 0.91217 0.91214 0.93446 0.78927 0.90608 0.91846 0.91610 0.92067 0.92178 0.92399 0.92062 0.92226 0.92240 0.92128 0.91251 0.90460 0.91436 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.55 13.70 55.43 0.76 -25.79 16 2 C 0.03 0.96 5.44 -17.82 -0.10 0.86 16 3 Si 1.05 24.12 24.55 -169.99 -4.17 19.94 16 4 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 5 H -0.28 -5.92 5.81 56.52 0.33 -5.60 16 6 H -0.28 -5.93 6.48 56.52 0.37 -5.57 16 7 C -0.62 -17.12 9.04 -34.44 -0.31 -17.43 16 8 H 0.06 1.88 8.06 -52.49 -0.42 1.46 16 9 C 0.21 5.03 1.07 -90.84 -0.10 4.94 16 10 O -0.56 -14.13 13.47 -35.23 -0.47 -14.61 16 11 C -0.04 -0.83 4.74 -2.63 -0.01 -0.84 16 12 N -0.46 -9.28 6.11 -238.01 -1.45 -10.73 16 13 C -0.01 -0.23 3.93 -3.82 -0.02 -0.24 16 14 C 0.12 1.71 2.99 -26.73 -0.08 1.63 16 15 H 0.09 1.48 8.14 -51.93 -0.42 1.05 16 16 O -0.55 -7.94 12.57 -35.23 -0.44 -8.39 16 17 C -0.12 -1.31 2.08 -90.62 -0.19 -1.50 16 18 C -0.12 -1.14 4.55 -26.73 -0.12 -1.26 16 19 C -0.12 -1.00 5.92 -26.73 -0.16 -1.16 16 20 C -0.12 -0.97 5.92 -26.73 -0.16 -1.13 16 21 C -0.12 -1.05 5.92 -26.73 -0.16 -1.21 16 22 C -0.11 -1.11 5.06 -26.73 -0.14 -1.25 16 23 C 0.02 0.51 7.34 -2.76 -0.02 0.49 16 24 H 0.27 8.04 8.73 -40.82 -0.36 7.68 16 25 H 0.36 8.52 6.07 45.56 0.28 8.79 16 26 H 0.07 1.56 7.32 -51.92 -0.38 1.18 16 27 H 0.07 1.51 6.86 -51.93 -0.36 1.16 16 28 H 0.07 0.99 6.65 -51.93 -0.35 0.65 16 29 H 0.05 0.76 7.39 -51.93 -0.38 0.38 16 30 H 0.36 4.20 7.33 45.56 0.33 4.53 16 31 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 32 H 0.06 0.57 6.78 -51.93 -0.35 0.22 16 33 H 0.07 0.65 6.54 -51.93 -0.34 0.31 16 34 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 35 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 36 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 37 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 38 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.06 0.48 8.14 -51.92 -0.42 0.06 16 40 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 41 H 0.07 0.75 7.68 -51.93 -0.40 0.35 16 42 H 0.08 1.63 8.14 -51.93 -0.42 1.21 16 43 H 0.07 1.39 7.88 -51.92 -0.41 0.98 16 LS Contribution 322.49 15.07 4.86 4.86 Total: -1.00 -30.41 322.49 -8.74 -39.15 By element: Atomic # 1 Polarization: 19.93 SS G_CDS: -6.26 Total: 13.66 kcal Atomic # 6 Polarization: -16.55 SS G_CDS: -1.55 Total: -18.10 kcal Atomic # 7 Polarization: -35.82 SS G_CDS: -0.69 Total: -36.52 kcal Atomic # 8 Polarization: -22.08 SS G_CDS: -0.92 Total: -23.00 kcal Atomic # 14 Polarization: 24.12 SS G_CDS: -4.17 Total: 19.94 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -30.41 -8.74 -39.15 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000332442370.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.817 kcal (2) G-P(sol) polarization free energy of solvation -30.411 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.228 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.154 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.971 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds