Wall clock time and date at job start Mon Mar 30 2020 01:24:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 120.00021 * 2 1 4 4 H 1.48497 * 109.47317 * 0.02562 * 3 2 1 5 5 H 1.48504 * 109.46658 * 120.00629 * 3 2 1 6 6 H 1.48498 * 109.47245 * 240.00390 * 3 2 1 7 7 C 1.37873 * 119.99606 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00397 * 14.39590 * 7 2 1 9 9 C 1.50703 * 119.99883 * 194.39693 * 7 2 1 10 10 O 1.42894 * 112.93780 * 65.59182 * 9 7 2 11 11 C 1.53931 * 113.73329 * 294.02567 * 9 7 2 12 12 N 1.48191 * 86.10382 * 221.95510 * 11 9 7 13 13 C 1.46895 * 111.07148 * 137.51771 * 12 11 9 14 14 C 1.53008 * 109.47096 * 90.57137 * 13 12 11 15 15 H 1.09000 * 109.46758 * 305.00136 * 14 13 12 16 16 O 1.42899 * 109.46841 * 64.99463 * 14 13 12 17 17 C 1.52997 * 109.47116 * 185.00060 * 14 13 12 18 18 C 1.53001 * 109.47082 * 299.99760 * 17 14 13 19 19 C 1.52999 * 109.47124 * 180.02562 * 18 17 14 20 20 C 1.52996 * 109.47186 * 60.00016 * 19 18 17 21 21 C 1.53001 * 109.47076 * 300.00013 * 20 19 18 22 22 C 1.52997 * 109.47082 * 60.00337 * 21 20 19 23 23 C 1.47965 * 90.79408 * 24.59826 * 12 11 9 24 24 H 0.96998 * 120.00288 * 174.86355 * 1 2 3 25 25 H 0.96707 * 114.00278 * 305.72064 * 10 9 7 26 26 H 1.09008 * 113.76207 * 336.23596 * 11 9 7 27 27 H 1.09000 * 113.75973 * 107.60215 * 11 9 7 28 28 H 1.09001 * 109.47243 * 210.56461 * 13 12 11 29 29 H 1.09004 * 109.47471 * 330.57264 * 13 12 11 30 30 H 0.96700 * 113.99777 * 60.00772 * 16 14 13 31 31 H 1.08998 * 109.47351 * 59.99553 * 17 14 13 32 32 H 1.09004 * 109.46896 * 300.00534 * 18 17 14 33 33 H 1.08999 * 109.47343 * 60.00048 * 18 17 14 34 34 H 1.08998 * 109.47014 * 299.99612 * 19 18 17 35 35 H 1.09003 * 109.46907 * 179.97438 * 19 18 17 36 36 H 1.09001 * 109.47608 * 180.02562 * 20 19 18 37 37 H 1.08998 * 109.47474 * 59.99878 * 20 19 18 38 38 H 1.09004 * 109.46896 * 299.99803 * 21 20 19 39 39 H 1.09007 * 109.47100 * 180.02562 * 21 20 19 40 40 H 1.09003 * 109.46865 * 180.02562 * 22 21 20 41 41 H 1.08998 * 109.47351 * 60.00206 * 22 21 20 42 42 H 1.08994 * 113.75787 * 221.07950 * 23 12 11 43 43 H 1.09008 * 113.85381 * 89.73740 * 23 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 0.0006 5 1 3.1030 1.6962 1.2125 6 1 3.1028 1.6965 -1.2125 7 6 2.0044 -1.1941 -0.0005 8 1 1.4899 -2.1146 -0.2335 9 6 3.4760 -1.2148 0.3240 10 8 3.7543 -0.8324 1.6724 11 6 4.3503 -0.4936 -0.7176 12 7 5.2902 -1.6292 -0.5662 13 6 5.8076 -2.0640 -1.8704 14 6 7.0937 -1.2990 -2.1897 15 1 6.9024 -0.2274 -2.1333 16 8 8.1054 -1.6527 -1.2444 17 6 7.5648 -1.6595 -3.6000 18 6 7.8332 -3.1637 -3.6791 19 6 8.3049 -3.5241 -5.0892 20 6 9.5910 -2.7591 -5.4079 21 6 9.3225 -1.2549 -5.3288 22 6 8.8510 -0.8945 -3.9186 23 6 4.1887 -2.5072 -0.1132 24 1 -0.4850 -0.8366 -0.0752 25 1 3.3816 0.0239 1.9234 26 1 3.8941 -0.4298 -1.7056 27 1 4.7511 0.4589 -0.3707 28 1 6.0190 -3.1329 -1.8394 29 1 5.0642 -1.8628 -2.6417 30 1 8.3271 -2.5939 -1.2394 31 1 6.7930 -1.3898 -4.3209 32 1 8.6049 -3.4334 -2.9581 33 1 6.9171 -3.7087 -3.4516 34 1 7.5334 -3.2543 -5.8104 35 1 8.4966 -4.5957 -5.1454 36 1 9.9268 -3.0155 -6.4127 37 1 10.3624 -3.0289 -4.6867 38 1 8.5511 -0.9851 -6.0501 39 1 10.2387 -0.7099 -5.5563 40 1 8.6593 0.1771 -3.8624 41 1 9.6224 -1.1643 -3.1974 42 1 4.4606 -3.1607 0.7156 43 1 3.6841 -3.0348 -0.9227 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000332442370.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:24:20 Heat of formation + Delta-G solvation = -111.376735 kcal Electronic energy + Delta-G solvation = -21803.817187 eV Core-core repulsion = 18654.972371 eV Total energy + Delta-G solvation = -3148.844816 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.25125 -40.05337 -37.31552 -36.15728 -34.65968 -32.72982 -31.68068 -30.65039 -28.08440 -27.17009 -25.51756 -23.79128 -22.79057 -21.63770 -20.91732 -20.48577 -19.90079 -17.65629 -17.48993 -16.96645 -16.57689 -16.26416 -15.97936 -15.54246 -15.26234 -15.02681 -14.87131 -14.69716 -14.39344 -13.86578 -13.67836 -13.38606 -13.18379 -13.04573 -12.80974 -12.54213 -12.34528 -12.13306 -12.09559 -12.03330 -11.78654 -11.61732 -11.46678 -11.32045 -11.18088 -10.91999 -10.83263 -10.49953 -10.26669 -9.67268 -8.83684 -6.60910 1.37417 1.44927 1.63790 2.35917 2.87592 2.88990 3.46263 3.62337 3.73368 3.81111 3.83164 3.95135 4.06619 4.08140 4.22276 4.29831 4.43999 4.45688 4.50406 4.58490 4.63804 4.65692 4.68077 4.70102 4.79157 4.81327 4.92841 5.03800 5.16213 5.20588 5.24343 5.29573 5.29857 5.39095 5.41812 5.47978 5.60856 5.68521 5.85935 6.16374 6.37281 6.91509 7.00965 7.23750 8.48273 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.030123 B = 0.004478 C = 0.004384 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 929.302419 B = 6251.091645 C = 6385.893512 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C -0.008 4.008 3 Si 1.079 2.921 4 H -0.286 1.286 5 H -0.250 1.250 6 H -0.249 1.249 7 C -0.626 4.626 8 H 0.026 0.974 9 C 0.188 3.812 10 O -0.571 6.571 11 C -0.028 4.028 12 N -0.463 5.463 13 C -0.015 4.015 14 C 0.130 3.870 15 H 0.077 0.923 16 O -0.560 6.560 17 C -0.111 4.111 18 C -0.118 4.118 19 C -0.117 4.117 20 C -0.118 4.118 21 C -0.118 4.118 22 C -0.106 4.106 23 C 0.028 3.972 24 H 0.256 0.744 25 H 0.367 0.633 26 H 0.070 0.930 27 H 0.077 0.923 28 H 0.088 0.912 29 H 0.047 0.953 30 H 0.377 0.623 31 H 0.074 0.926 32 H 0.070 0.930 33 H 0.062 0.938 34 H 0.058 0.942 35 H 0.069 0.931 36 H 0.068 0.932 37 H 0.063 0.937 38 H 0.059 0.941 39 H 0.067 0.933 40 H 0.053 0.947 41 H 0.064 0.936 42 H 0.079 0.921 43 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.324 -3.735 -11.504 22.797 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.209 4.209 3 Si 0.899 3.101 4 H -0.212 1.212 5 H -0.174 1.174 6 H -0.173 1.173 7 C -0.664 4.664 8 H 0.044 0.956 9 C 0.148 3.852 10 O -0.379 6.379 11 C -0.157 4.157 12 N -0.185 5.185 13 C -0.144 4.144 14 C 0.070 3.930 15 H 0.095 0.905 16 O -0.367 6.367 17 C -0.130 4.130 18 C -0.156 4.156 19 C -0.154 4.154 20 C -0.155 4.155 21 C -0.155 4.155 22 C -0.144 4.144 23 C -0.101 4.101 24 H 0.066 0.934 25 H 0.217 0.783 26 H 0.088 0.912 27 H 0.095 0.905 28 H 0.106 0.894 29 H 0.065 0.935 30 H 0.226 0.774 31 H 0.092 0.908 32 H 0.089 0.911 33 H 0.080 0.920 34 H 0.077 0.923 35 H 0.088 0.912 36 H 0.087 0.913 37 H 0.081 0.919 38 H 0.077 0.923 39 H 0.086 0.914 40 H 0.072 0.928 41 H 0.083 0.917 42 H 0.098 0.902 43 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 20.016 -2.007 -10.930 22.894 hybrid contribution -1.731 -2.097 -0.716 2.811 sum 18.285 -4.103 -11.646 22.064 Atomic orbital electron populations 1.70955 1.08135 1.30374 1.46385 1.27247 0.96119 1.06195 0.91313 0.83701 0.74788 0.71641 0.79967 1.21220 1.17449 1.17346 1.22511 0.95738 0.95043 1.53118 0.95550 1.20403 0.91375 0.93387 0.80069 1.86347 1.79226 1.41763 1.30581 1.24951 0.93949 0.96453 1.00323 1.68525 1.22689 1.03846 1.23480 1.23541 0.98279 1.01179 0.91365 1.21689 0.85307 0.98302 0.87659 0.90491 1.86572 1.57807 1.30793 1.61483 1.21770 0.98527 0.96908 0.95808 1.21631 1.01373 0.94325 0.98235 1.21503 0.97616 1.00194 0.96091 1.21532 0.97482 0.94724 1.01774 1.21538 1.01160 0.96595 0.96247 1.21442 0.96573 0.99012 0.97330 1.23840 0.91104 0.95852 0.99313 0.93428 0.78336 0.91206 0.90494 0.89353 0.93511 0.77394 0.90804 0.91120 0.91953 0.92315 0.91214 0.91342 0.91868 0.92253 0.91439 0.92842 0.91708 0.90241 0.91049 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -56.25 13.70 21.45 0.29 -55.95 16 2 C -0.01 -0.47 5.44 84.65 0.46 -0.01 16 3 Si 1.08 47.33 24.55 68.60 1.68 49.02 16 4 H -0.29 -12.72 7.11 99.48 0.71 -12.02 16 5 H -0.25 -9.73 5.81 99.48 0.58 -9.15 16 6 H -0.25 -9.85 6.48 99.48 0.64 -9.21 16 7 C -0.63 -35.21 9.04 25.60 0.23 -34.98 16 8 H 0.03 1.62 8.06 -2.91 -0.02 1.60 16 9 C 0.19 9.06 1.07 -10.90 -0.01 9.05 16 10 O -0.57 -27.91 13.47 -148.98 -2.01 -29.92 16 11 C -0.03 -1.16 4.74 86.36 0.41 -0.75 16 12 N -0.46 -17.64 6.11 -910.14 -5.56 -23.20 16 13 C -0.01 -0.44 3.93 86.31 0.34 -0.10 16 14 C 0.13 3.37 2.99 30.60 0.09 3.46 16 15 H 0.08 2.28 8.14 -2.39 -0.02 2.26 16 16 O -0.56 -15.01 12.57 -148.98 -1.87 -16.88 16 17 C -0.11 -2.19 2.08 -10.79 -0.02 -2.21 16 18 C -0.12 -1.95 4.55 30.59 0.14 -1.81 16 19 C -0.12 -1.67 5.92 30.59 0.18 -1.49 16 20 C -0.12 -1.59 5.92 30.59 0.18 -1.40 16 21 C -0.12 -1.77 5.92 30.59 0.18 -1.59 16 22 C -0.11 -1.96 5.06 30.59 0.15 -1.80 16 23 C 0.03 1.16 7.34 86.41 0.63 1.79 16 24 H 0.26 15.87 8.73 -92.71 -0.81 15.06 16 25 H 0.37 16.65 6.07 -74.05 -0.45 16.20 16 26 H 0.07 2.93 7.32 -2.38 -0.02 2.91 16 27 H 0.08 3.12 6.86 -2.39 -0.02 3.11 16 28 H 0.09 2.29 6.65 -2.39 -0.02 2.27 16 29 H 0.05 1.41 7.39 -2.38 -0.02 1.39 16 30 H 0.38 7.70 7.33 -74.06 -0.54 7.16 16 31 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 32 H 0.07 1.07 6.78 -2.39 -0.02 1.05 16 33 H 0.06 1.08 6.54 -2.39 -0.02 1.06 16 34 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 35 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 36 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 37 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 38 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 39 H 0.07 0.92 8.14 -2.38 -0.02 0.90 16 40 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 41 H 0.06 1.26 7.68 -2.39 -0.02 1.24 16 42 H 0.08 3.27 8.14 -2.39 -0.02 3.25 16 43 H 0.07 2.89 7.88 -2.38 -0.02 2.87 16 Total: -1.00 -65.35 322.49 -4.72 -70.07 By element: Atomic # 1 Polarization: 38.94 SS G_CDS: -0.23 Total: 38.71 kcal Atomic # 6 Polarization: -34.81 SS G_CDS: 2.97 Total: -31.84 kcal Atomic # 7 Polarization: -73.89 SS G_CDS: -5.26 Total: -79.15 kcal Atomic # 8 Polarization: -42.92 SS G_CDS: -3.88 Total: -46.80 kcal Atomic # 14 Polarization: 47.33 SS G_CDS: 1.68 Total: 49.02 kcal Total: -65.35 -4.72 -70.07 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000332442370.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.311 kcal (2) G-P(sol) polarization free energy of solvation -65.350 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.661 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.716 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.066 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.377 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds